Literature DB >> 21578322

Glucosyl anthranilate.

Haoyan Liu1, Ailan Zou, Hao Zhang, Xiaoming Wang, Yonghua Yang.   

Abstract

In the crystal structure of the title compound, C(21)H(25)NO(11), the hexopyranosyl ring adopts a chair conformation and the five substituents are in equatorial positions. An intra-molecular hydrogen bond between the amino group and a neighbouring carbonyl group is found. Two carbonyl groups are disordered and were refined using a split model.

Entities:  

Year:  2009        PMID: 21578322      PMCID: PMC2971110          DOI: 10.1107/S1600536809040975

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The title compound was first obtained by Robert & Tabone (1953 ▶). For the glycosyl­ation reaction of N-hydroxy­phthalimide, see: Cao et al. (1995 ▶); Saulius et al. (2005 ▶). For the Hofmann rearrangement, see: Aspinall (1941 ▶); Yu et al. (2001 ▶).

Experimental

Crystal data

C21H25NO11 M = 467.42 Triclinic, a = 5.8220 (12) Å b = 9.1210 (18) Å c = 11.131 (2) Å α = 98.94 (3)° β = 94.53 (3)° γ = 90.22 (3)° V = 582.0 (2) Å3 Z = 1 Mo Kα radiation μ = 0.11 mm−1 T = 293 K 0.30 × 0.20 × 0.10 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: none 2321 measured reflections 2096 independent reflections 1783 reflections with I > 2σ(I) R int = 0.020 3 standard reflections every 200 reflections intensity decay: 1%

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.100 S = 1.04 2096 reflections 320 parameters 5 restraints H-atom parameters constrained Δρmax = 0.14 e Å−3 Δρmin = −0.13 e Å−3 Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1994 ▶); cell refinement: CAD-4 EXPRESS; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809040975/nc2157sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809040975/nc2157Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H25NO11Z = 1
Mr = 467.42F(000) = 246
Triclinic, P1Dx = 1.334 Mg m3
Hall symbol: P 1Mo Kα radiation, λ = 0.71073 Å
a = 5.8220 (12) ÅCell parameters from 25 reflections
b = 9.1210 (18) Åθ = 9–12°
c = 11.131 (2) ŵ = 0.11 mm1
α = 98.94 (3)°T = 293 K
β = 94.53 (3)°Block, colourless
γ = 90.22 (3)°0.30 × 0.20 × 0.10 mm
V = 582.0 (2) Å3
Enraf–Nonius CAD-4 diffractometerRint = 0.020
Radiation source: fine-focus sealed tubeθmax = 25.3°, θmin = 1.9°
graphiteh = 0→6
ω/2θ scansk = −10→10
2321 measured reflectionsl = −13→13
2096 independent reflections3 standard reflections every 200 reflections
1783 reflections with I > 2σ(I) intensity decay: 1%
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.040H-atom parameters constrained
wR(F2) = 0.100w = 1/[σ2(Fo2) + (0.0551P)2 + 0.0615P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max < 0.001
2096 reflectionsΔρmin = −0.13 e Å3
320 parametersExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
5 restraintsExtinction coefficient: 0.052 (8)
Primary atom site location: structure-invariant direct methods
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
O10.4723 (4)0.2186 (3)0.0201 (2)0.0473 (6)
O20.4296 (4)0.0007 (3)−0.1971 (2)0.0552 (6)
O30.6518 (6)−0.1311 (4)−0.3260 (4)0.1014 (13)
O40.6863 (4)0.4159 (3)−0.2092 (2)0.0478 (6)
O51.0705 (5)0.4424 (4)−0.1993 (3)0.0797 (9)
O60.8323 (4)0.6042 (3)0.0311 (2)0.0539 (6)
O70.6443 (18)0.8007 (11)−0.0182 (10)0.089 (3)0.50
O7'0.697 (2)0.7638 (13)−0.0826 (9)0.102 (4)0.50
O80.4552 (5)0.5912 (3)0.1864 (2)0.0642 (7)
O90.715 (3)0.587 (3)0.337 (2)0.172 (11)0.50
O9'0.650 (4)0.562 (2)0.3641 (18)0.138 (8)0.50
O100.3348 (4)0.2984 (3)0.2025 (2)0.0538 (6)
O11−0.0099 (4)0.2080 (3)0.1202 (2)0.0613 (7)
N1−0.2584 (6)0.0580 (5)0.2582 (4)0.0830 (11)
H1A−0.37430.00710.27340.100*
H1B−0.25090.08170.18680.100*
C10.3810 (6)0.3425 (4)0.0908 (3)0.0468 (8)
H1C0.24060.37580.04930.056*
C20.5594 (6)0.4647 (4)0.1187 (3)0.0498 (8)
H2A0.69350.43310.16650.060*
C30.6312 (5)0.5090 (4)0.0013 (3)0.0447 (8)
H3A0.50610.5628−0.03600.054*
C40.6931 (5)0.3744 (4)−0.0887 (3)0.0442 (8)
H4A0.84740.3406−0.06530.053*
C50.5175 (6)0.2470 (4)−0.0987 (3)0.0423 (7)
H5A0.37400.2725−0.14230.051*
C60.6126 (6)0.1085 (4)−0.1660 (3)0.0498 (8)
H6A0.67670.1297−0.23950.060*
H6B0.73440.0707−0.11520.060*
C70.4769 (8)−0.1189 (5)−0.2748 (4)0.0656 (11)
C80.2885 (9)−0.2322 (5)−0.2932 (5)0.0827 (14)
H8A0.2755−0.2799−0.37670.124*
H8B0.1459−0.1852−0.27390.124*
H8C0.3223−0.3049−0.24070.124*
C90.8873 (6)0.4456 (4)−0.2551 (3)0.0527 (9)
C100.8433 (8)0.4856 (5)−0.3784 (4)0.0667 (11)
H10A0.79420.5867−0.37180.100*
H10B0.72510.4214−0.42360.100*
H10C0.98220.4748−0.41990.100*
C110.8326 (8)0.7376 (4)−0.0001 (4)0.0644 (10)
C121.0535 (8)0.8176 (5)0.0358 (5)0.0797 (13)
H12A1.02860.92260.04440.120*0.50
H12B1.15870.7897−0.02560.120*0.50
H12C1.11720.79280.11220.120*0.50
H12D1.17440.74750.04290.120*0.50
H12E1.04430.88040.11290.120*0.50
H12F1.08580.8773−0.02490.120*0.50
C130.5261 (15)0.6275 (7)0.3044 (5)0.104 (2)
C140.3672 (15)0.7450 (8)0.3642 (6)0.140 (3)
H14A0.42080.77420.44830.210*
H14B0.21350.70480.35890.210*
H14C0.36750.82990.32290.210*
C150.1294 (6)0.2281 (4)0.2076 (3)0.0463 (8)
C160.1078 (6)0.1823 (4)0.3258 (3)0.0509 (8)
C170.2779 (7)0.2219 (5)0.4221 (3)0.0662 (11)
H17A0.40590.27710.40930.079*
C180.2601 (8)0.1814 (6)0.5343 (4)0.0797 (13)
H18A0.37560.20770.59670.096*
C190.0679 (8)0.1007 (6)0.5540 (4)0.0797 (13)
H19A0.05420.07270.63000.096*
C20−0.0983 (8)0.0629 (5)0.4637 (4)0.0734 (12)
H20A−0.22590.00930.47920.088*
C21−0.0876 (6)0.1010 (5)0.3469 (4)0.0598 (10)
U11U22U33U12U13U23
O10.0441 (13)0.0510 (13)0.0484 (14)−0.0033 (10)0.0031 (10)0.0132 (11)
O20.0537 (14)0.0508 (14)0.0595 (15)−0.0097 (11)0.0062 (11)0.0030 (12)
O30.103 (3)0.079 (2)0.117 (3)−0.0201 (19)0.056 (2)−0.026 (2)
O40.0410 (12)0.0614 (14)0.0442 (13)−0.0013 (10)0.0038 (10)0.0185 (10)
O50.0482 (16)0.115 (3)0.085 (2)0.0004 (16)0.0113 (14)0.0408 (19)
O60.0488 (13)0.0473 (13)0.0660 (15)−0.0081 (10)−0.0006 (11)0.0135 (11)
O70.097 (6)0.059 (5)0.111 (8)−0.001 (4)−0.026 (6)0.027 (6)
O7'0.137 (9)0.074 (7)0.097 (7)−0.030 (6)−0.043 (7)0.048 (6)
O80.0817 (19)0.0653 (17)0.0434 (14)−0.0074 (14)0.0076 (13)0.0007 (12)
O90.195 (14)0.25 (2)0.054 (10)−0.041 (14)−0.044 (11)−0.003 (10)
O9'0.24 (2)0.120 (9)0.045 (7)0.027 (12)−0.037 (9)0.012 (6)
O100.0464 (13)0.0762 (17)0.0416 (13)−0.0096 (12)0.0003 (10)0.0195 (12)
O110.0465 (13)0.0835 (18)0.0562 (15)−0.0085 (12)−0.0038 (12)0.0225 (13)
N10.056 (2)0.113 (3)0.084 (3)−0.024 (2)0.0081 (19)0.029 (2)
C10.0431 (18)0.057 (2)0.0412 (18)−0.0010 (16)0.0010 (14)0.0115 (16)
C20.053 (2)0.055 (2)0.0421 (17)−0.0015 (16)−0.0016 (15)0.0115 (16)
C30.0415 (18)0.0468 (19)0.0463 (19)−0.0008 (15)−0.0011 (14)0.0115 (15)
C40.0395 (17)0.051 (2)0.0440 (18)−0.0010 (15)−0.0026 (14)0.0153 (15)
C50.0365 (16)0.0510 (19)0.0408 (17)−0.0019 (14)0.0005 (13)0.0127 (14)
C60.0476 (19)0.052 (2)0.0501 (19)−0.0045 (16)0.0055 (15)0.0068 (16)
C70.083 (3)0.055 (2)0.057 (2)−0.010 (2)0.007 (2)0.0042 (19)
C80.099 (4)0.064 (3)0.080 (3)−0.028 (3)0.008 (3)−0.005 (2)
C90.050 (2)0.052 (2)0.059 (2)−0.0008 (16)0.0101 (18)0.0132 (17)
C100.074 (3)0.074 (3)0.056 (2)−0.011 (2)0.014 (2)0.019 (2)
C110.076 (3)0.050 (2)0.069 (3)−0.007 (2)0.001 (2)0.0158 (19)
C120.081 (3)0.059 (3)0.099 (4)−0.020 (2)0.016 (3)0.007 (2)
C130.152 (6)0.099 (4)0.052 (3)−0.029 (4)−0.004 (4)−0.006 (3)
C140.209 (8)0.121 (5)0.081 (4)−0.021 (5)0.050 (5)−0.032 (4)
C150.0416 (18)0.049 (2)0.0492 (19)0.0038 (15)0.0062 (15)0.0104 (15)
C160.047 (2)0.059 (2)0.050 (2)0.0088 (16)0.0126 (16)0.0149 (17)
C170.061 (2)0.093 (3)0.048 (2)−0.001 (2)0.0040 (18)0.021 (2)
C180.069 (3)0.121 (4)0.053 (2)0.005 (3)0.006 (2)0.028 (2)
C190.080 (3)0.112 (4)0.060 (3)0.023 (3)0.026 (2)0.041 (2)
C200.067 (3)0.086 (3)0.078 (3)0.004 (2)0.031 (2)0.034 (2)
C210.045 (2)0.070 (2)0.069 (2)0.0069 (18)0.0152 (18)0.021 (2)
O1—C11.405 (4)C6—H6A0.9700
O1—C51.430 (4)C6—H6B0.9700
O2—C71.326 (5)C7—C81.485 (6)
O2—C61.432 (4)C8—H8A0.9600
O3—C71.203 (5)C8—H8B0.9600
O4—C91.356 (4)C8—H8C0.9600
O4—C41.447 (4)C9—C101.478 (5)
O5—C91.194 (4)C10—H10A0.9600
O6—C111.316 (4)C10—H10B0.9600
O6—C31.441 (4)C10—H10C0.9600
O7—C111.257 (10)C11—C121.472 (6)
O7'—C111.217 (9)C12—H12A0.9600
O8—C131.335 (6)C12—H12B0.9600
O8—C21.440 (5)C12—H12C0.9600
O9—C131.204 (17)C12—H12D0.9600
O9'—C131.169 (14)C12—H12E0.9600
O10—C151.364 (4)C12—H12F0.9600
O10—C11.409 (4)C13—C141.526 (11)
O11—C151.206 (4)C14—H14A0.9600
N1—C211.357 (5)C14—H14B0.9600
N1—H1A0.8600C14—H14C0.9600
N1—H1B0.8600C15—C161.456 (5)
C1—C21.500 (5)C16—C171.404 (5)
C1—H1C0.9800C16—C211.410 (5)
C2—C31.515 (5)C17—C181.368 (6)
C2—H2A0.9800C17—H17A0.9300
C3—C41.522 (5)C18—C191.388 (7)
C3—H3A0.9800C18—H18A0.9300
C4—C51.530 (4)C19—C201.342 (7)
C4—H4A0.9800C19—H19A0.9300
C5—C61.497 (5)C20—C211.403 (6)
C5—H5A0.9800C20—H20A0.9300
C1—O1—C5112.2 (2)H10B—C10—H10C109.5
C7—O2—C6115.5 (3)O7'—C11—O739.0 (6)
C9—O4—C4118.9 (3)O7'—C11—O6119.0 (6)
C11—O6—C3120.2 (3)O7—C11—O6119.4 (6)
C13—O8—C2117.4 (4)O7'—C11—C12124.0 (7)
C15—O10—C1117.7 (3)O7—C11—C12123.8 (6)
C21—N1—H1A120.0O6—C11—C12112.6 (4)
C21—N1—H1B120.0C11—C12—H12A109.5
H1A—N1—H1B120.0C11—C12—H12B109.5
O1—C1—O10106.7 (3)H12A—C12—H12B109.5
O1—C1—C2109.6 (3)C11—C12—H12C109.5
O10—C1—C2107.4 (3)H12A—C12—H12C109.5
O1—C1—H1C111.0H12B—C12—H12C109.5
O10—C1—H1C111.0C11—C12—H12D109.5
C2—C1—H1C111.0H12A—C12—H12D141.1
O8—C2—C1107.6 (3)H12B—C12—H12D56.3
O8—C2—C3108.0 (3)H12C—C12—H12D56.3
C1—C2—C3110.1 (3)C11—C12—H12E109.5
O8—C2—H2A110.3H12A—C12—H12E56.3
C1—C2—H2A110.3H12B—C12—H12E141.1
C3—C2—H2A110.3H12C—C12—H12E56.3
O6—C3—C2107.8 (3)H12D—C12—H12E109.5
O6—C3—C4108.3 (3)C11—C12—H12F109.5
C2—C3—C4111.6 (3)H12A—C12—H12F56.3
O6—C3—H3A109.7H12B—C12—H12F56.3
C2—C3—H3A109.7H12C—C12—H12F141.1
C4—C3—H3A109.7H12D—C12—H12F109.5
O4—C4—C3108.6 (3)H12E—C12—H12F109.5
O4—C4—C5105.5 (2)O9'—C13—O928 (2)
C3—C4—C5112.4 (3)O9'—C13—O8128.1 (11)
O4—C4—H4A110.1O9—C13—O8117.2 (13)
C3—C4—H4A110.1O9'—C13—C14120.6 (12)
C5—C4—H4A110.1O9—C13—C14131.9 (12)
O1—C5—C6107.8 (3)O8—C13—C14109.1 (7)
O1—C5—C4110.3 (2)C13—C14—H14A109.5
C6—C5—C4109.7 (3)C13—C14—H14B109.5
O1—C5—H5A109.7H14A—C14—H14B109.5
C6—C5—H5A109.7C13—C14—H14C109.5
C4—C5—H5A109.7H14A—C14—H14C109.5
O2—C6—C5108.5 (3)H14B—C14—H14C109.5
O2—C6—H6A110.0O11—C15—O10120.9 (3)
C5—C6—H6A110.0O11—C15—C16126.9 (3)
O2—C6—H6B110.0O10—C15—C16112.2 (3)
C5—C6—H6B110.0C17—C16—C21118.7 (3)
H6A—C6—H6B108.4C17—C16—C15120.6 (3)
O3—C7—O2123.0 (4)C21—C16—C15120.7 (3)
O3—C7—C8124.4 (4)C18—C17—C16121.6 (4)
O2—C7—C8112.5 (4)C18—C17—H17A119.2
C7—C8—H8A109.5C16—C17—H17A119.2
C7—C8—H8B109.5C17—C18—C19119.3 (4)
H8A—C8—H8B109.5C17—C18—H18A120.4
C7—C8—H8C109.5C19—C18—H18A120.4
H8A—C8—H8C109.5C20—C19—C18120.2 (4)
H8B—C8—H8C109.5C20—C19—H19A119.9
O5—C9—O4122.9 (3)C18—C19—H19A119.9
O5—C9—C10126.6 (4)C19—C20—C21122.7 (4)
O4—C9—C10110.5 (3)C19—C20—H20A118.6
C9—C10—H10A109.5C21—C20—H20A118.6
C9—C10—H10B109.5N1—C21—C20120.4 (4)
H10A—C10—H10B109.5N1—C21—C16122.1 (4)
C9—C10—H10C109.5C20—C21—C16117.5 (4)
H10A—C10—H10C109.5
C5—O1—C1—O10177.4 (2)O1—C5—C6—O272.2 (3)
C5—O1—C1—C2−66.6 (3)C4—C5—C6—O2−167.7 (3)
C15—O10—C1—O1−84.7 (3)C6—O2—C7—O3−7.3 (6)
C15—O10—C1—C2157.9 (3)C6—O2—C7—C8174.2 (4)
C13—O8—C2—C1109.3 (4)C4—O4—C9—O5−1.8 (5)
C13—O8—C2—C3−131.8 (4)C4—O4—C9—C10−180.0 (3)
O1—C1—C2—O8177.5 (3)C3—O6—C11—O7'−21.7 (9)
O10—C1—C2—O8−67.0 (3)C3—O6—C11—O723.3 (8)
O1—C1—C2—C360.0 (3)C3—O6—C11—C12−179.0 (3)
O10—C1—C2—C3175.5 (3)C2—O8—C13—O9'−7.0 (19)
C11—O6—C3—C2−124.0 (3)C2—O8—C13—O923.4 (19)
C11—O6—C3—C4115.1 (4)C2—O8—C13—C14−170.0 (4)
O8—C2—C3—O673.9 (3)C1—O10—C15—O11−1.9 (5)
C1—C2—C3—O6−168.8 (3)C1—O10—C15—C16177.2 (3)
O8—C2—C3—C4−167.2 (3)O11—C15—C16—C17−175.7 (4)
C1—C2—C3—C4−49.9 (4)O10—C15—C16—C175.2 (5)
C9—O4—C4—C3101.4 (3)O11—C15—C16—C212.4 (6)
C9—O4—C4—C5−137.9 (3)O10—C15—C16—C21−176.7 (3)
O6—C3—C4—O4−79.8 (3)C21—C16—C17—C181.2 (6)
C2—C3—C4—O4161.6 (2)C15—C16—C17—C18179.3 (4)
O6—C3—C4—C5163.8 (2)C16—C17—C18—C19−0.8 (7)
C2—C3—C4—C545.2 (3)C17—C18—C19—C200.0 (8)
C1—O1—C5—C6−179.8 (3)C18—C19—C20—C210.3 (8)
C1—O1—C5—C460.5 (3)C19—C20—C21—N1178.9 (4)
O4—C4—C5—O1−167.3 (2)C19—C20—C21—C160.1 (7)
C3—C4—C5—O1−49.1 (3)C17—C16—C21—N1−179.6 (4)
O4—C4—C5—C674.1 (3)C15—C16—C21—N12.2 (6)
C3—C4—C5—C6−167.7 (3)C17—C16—C21—C20−0.8 (5)
C7—O2—C6—C5169.0 (3)C15—C16—C21—C20−178.9 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1B···O110.862.062.704 (5)131
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1B⋯O110.862.062.704 (5)131
  2 in total

1.  Chemoselective assembly and immunological evaluation of multiepitopic glycoconjugates bearing clustered Tn antigen as synthetic anticancer vaccines.

Authors:  Saulius Grigalevicius; Sabine Chierici; Olivier Renaudet; Richard Lo-Man; Edith Dériaud; Claude Leclerc; Pascal Dumy
Journal:  Bioconjug Chem       Date:  2005 Sep-Oct       Impact factor: 4.774

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  2 in total
  1 in total

1.  2,3,4,6-Tetra-O-acetyl-β-d-galacto-pyrano-syl butyrate.

Authors:  Yan-Li Cui; Ming-Han Xu; Jian-Wei Mao; Yong-Ping Yu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-01-11
  1 in total

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