Literature DB >> 22346905

3-(4-Chloro-phen-yl)-5-(thio-phen-2-yl)-4,5-dihydro-1H-pyrazole-1-carbothio-amide.

Hoong-Kun Fun, Thitipone Suwunwong, Suchada Chantrapromma.   

Abstract

In the title pyrazoline derivative, C(14)H(12)ClN(3)S(2), the thiophene ring is disordered over two orientations with a refined site-occupancy ratio of 0.832 (4):0.168 (4). The pyrazoline ring adopts an envelope conformation with the C atom linking the thiophene ring at the flap. The dihedral angles between the benzene ring and the major and minor components of the thiophene ring are 88.6 (3) and 85.6 (15)°, respectively while the dihedral angle between the disorder components of the ring is 3.1 (16)°. The mean plane of the pyrazoline ring makes dihedral angles of 11.86 (13), 80.1 (3) and 83.0 (15)°, respectively, with the benzene ring, and the major and minor components of the thiophene ring. An intra-molecular N(amide)-H⋯N(pyrazoline) hydrogen bond generates an S(5) ring motif. In the crystal, mol-ecules are linked by weak C-H⋯S and N(amide)-H⋯S inter-actions into a tape along [10[Formula: see text]]. C-H⋯π inter-actions are also observed.

Entities:  

Year:  2012        PMID: 22346905      PMCID: PMC3274952          DOI: 10.1107/S1600536811054754

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For bond-length data, see: Allen et al. (1987 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For ring conformations, see: Cremer & Pople (1975 ▶). For related structures, see: Fun et al. (2011 ▶); Nonthason et al. (2011 ▶). For background to and applications of pyrazoline derivatives, see: Bai et al. (2007 ▶); Gong et al. (2011 ▶); Husain et al. (2008 ▶); Khode et al. (2009 ▶); Shoman et al. (2009 ▶); Taj et al. (2011 ▶). For the stability of the temperature controller, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C14H12ClN3S2 M = 321.86 Monoclinic, a = 6.7784 (3) Å b = 25.2104 (11) Å c = 8.4628 (4) Å β = 90.339 (2)° V = 1446.15 (11) Å3 Z = 4 Mo Kα radiation μ = 0.55 mm−1 T = 100 K 0.56 × 0.09 × 0.08 mm

Data collection

Bruker APEX DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.749, T max = 0.958 32828 measured reflections 4206 independent reflections 3801 reflections with I > 2σ(I) R int = 0.047

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.138 S = 1.10 4206 reflections 211 parameters 10 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.33 e Å−3 Δρmin = −0.59 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811054754/is5024sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811054754/is5024Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811054754/is5024Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H12ClN3S2F(000) = 664
Mr = 321.86Dx = 1.478 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 4206 reflections
a = 6.7784 (3) Åθ = 0.8–30.0°
b = 25.2104 (11) ŵ = 0.55 mm1
c = 8.4628 (4) ÅT = 100 K
β = 90.339 (2)°Needle, pale-yellow
V = 1446.15 (11) Å30.56 × 0.09 × 0.08 mm
Z = 4
Bruker APEX DUO CCD area-detector diffractometer4206 independent reflections
Radiation source: sealed tube3801 reflections with I > 2σ(I)
graphiteRint = 0.047
φ and ω scansθmax = 30.0°, θmin = 0.8°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −9→9
Tmin = 0.749, Tmax = 0.958k = −35→35
32828 measured reflectionsl = −11→11
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.049Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.138H atoms treated by a mixture of independent and constrained refinement
S = 1.10w = 1/[σ2(Fo2) + (0.0644P)2 + 1.9543P] where P = (Fo2 + 2Fc2)/3
4206 reflections(Δ/σ)max = 0.002
211 parametersΔρmax = 0.33 e Å3
10 restraintsΔρmin = −0.59 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Cl1−0.33129 (11)0.74126 (3)0.43185 (9)0.02922 (17)
S20.81787 (10)1.01564 (3)0.70895 (8)0.02383 (16)
N10.5530 (3)0.93930 (8)0.6751 (3)0.0187 (4)
N20.4447 (3)0.90237 (8)0.5877 (2)0.0182 (4)
C9−0.0433 (4)0.85079 (10)0.6843 (3)0.0200 (5)
H9A−0.06800.87210.77470.024*
N30.7384 (4)0.95592 (10)0.4561 (3)0.0264 (5)
C40.5995 (4)0.91382 (10)0.9528 (3)0.0190 (4)
S1A0.81128 (18)0.93898 (4)1.03729 (11)0.0196 (2)0.832 (4)
C1A0.8584 (10)0.8815 (2)1.1384 (9)0.0242 (10)0.832 (4)
H1AA0.96810.87641.20710.029*0.832 (4)
C2A0.7184 (16)0.8437 (3)1.1078 (12)0.0289 (15)0.832 (4)
H2AA0.72030.80901.15190.035*0.832 (4)
C3A0.5701 (18)0.8623 (3)1.0024 (14)0.0263 (16)0.832 (4)
H3AA0.46100.84130.96920.032*0.832 (4)
S1B0.544 (2)0.8499 (4)0.9965 (18)0.0243 (19)0.168 (4)
C1B0.751 (7)0.8414 (15)1.110 (8)0.038 (14)*0.168 (4)
H1BA0.78800.80891.15880.046*0.168 (4)
C2B0.856 (7)0.8873 (15)1.122 (7)0.041 (9)*0.168 (4)
H2BA0.97260.89121.18320.049*0.168 (4)
C3B0.770 (4)0.9289 (10)1.031 (4)0.041 (9)*0.168 (4)
H3BA0.82400.96361.02500.049*0.168 (4)
C50.4780 (4)0.94575 (10)0.8380 (3)0.0186 (4)
H5A0.47510.98400.86910.022*
C60.2675 (4)0.92375 (11)0.8167 (3)0.0210 (5)
H6A0.22930.90090.90670.025*
H6B0.16980.95270.80470.025*
C70.2870 (3)0.89198 (9)0.6660 (3)0.0170 (4)
C80.1379 (4)0.85466 (9)0.6075 (3)0.0174 (4)
C10−0.1881 (4)0.81612 (10)0.6300 (3)0.0207 (5)
H10A−0.31170.81400.68190.025*
C11−0.1501 (4)0.78485 (10)0.4997 (3)0.0213 (5)
C120.0296 (4)0.78746 (11)0.4212 (3)0.0238 (5)
H12A0.05370.76550.33210.029*
C130.1730 (4)0.82256 (10)0.4750 (3)0.0219 (5)
H13A0.29570.82490.42170.026*
C140.6989 (4)0.96747 (10)0.6069 (3)0.0205 (5)
H1N30.673 (6)0.9294 (15)0.408 (5)0.030 (9)*
H2N30.851 (6)0.9675 (15)0.416 (4)0.032 (9)*
U11U22U33U12U13U23
Cl10.0269 (3)0.0216 (3)0.0391 (4)−0.0052 (2)−0.0061 (3)−0.0048 (3)
S20.0228 (3)0.0227 (3)0.0259 (3)−0.0056 (2)−0.0034 (2)0.0011 (2)
N10.0178 (9)0.0199 (10)0.0183 (9)−0.0026 (7)−0.0012 (7)−0.0010 (8)
N20.0172 (9)0.0188 (9)0.0186 (9)−0.0006 (7)−0.0026 (7)0.0008 (7)
C90.0199 (11)0.0196 (11)0.0204 (11)0.0018 (9)−0.0006 (8)−0.0018 (9)
N30.0265 (11)0.0329 (13)0.0198 (10)−0.0107 (10)0.0001 (9)0.0018 (9)
C40.0185 (10)0.0215 (11)0.0171 (10)−0.0012 (8)0.0002 (8)−0.0041 (9)
S1A0.0192 (4)0.0206 (4)0.0188 (4)0.0009 (4)−0.0021 (3)−0.0030 (3)
C1A0.029 (2)0.024 (2)0.019 (2)0.0046 (15)−0.0052 (13)−0.0011 (15)
C2A0.037 (3)0.023 (2)0.027 (3)−0.003 (2)−0.006 (2)0.0051 (14)
C3A0.028 (3)0.027 (4)0.024 (2)−0.009 (3)−0.005 (2)0.000 (3)
S1B0.026 (4)0.022 (4)0.025 (3)−0.007 (3)−0.007 (2)0.000 (3)
C50.0171 (10)0.0196 (11)0.0191 (10)−0.0004 (8)0.0004 (8)−0.0037 (8)
C60.0185 (11)0.0222 (11)0.0224 (11)−0.0010 (9)0.0003 (9)−0.0052 (9)
C70.0172 (10)0.0163 (10)0.0174 (10)0.0007 (8)−0.0031 (8)0.0001 (8)
C80.0196 (11)0.0150 (10)0.0175 (10)0.0009 (8)−0.0020 (8)0.0010 (8)
C100.0182 (10)0.0182 (11)0.0257 (12)−0.0002 (9)−0.0008 (9)0.0008 (9)
C110.0218 (11)0.0158 (10)0.0263 (12)−0.0019 (9)−0.0047 (9)−0.0003 (9)
C120.0270 (12)0.0211 (12)0.0231 (12)−0.0001 (10)−0.0027 (10)−0.0062 (9)
C130.0219 (11)0.0216 (11)0.0222 (11)0.0004 (10)0.0011 (9)−0.0028 (9)
C140.0200 (11)0.0213 (11)0.0201 (11)−0.0015 (9)−0.0029 (9)0.0045 (9)
Cl1—C111.743 (3)C2A—H2AA0.9500
S2—C141.692 (3)C3A—H3AA0.9500
N1—C141.350 (3)S1B—C1B1.71 (2)
N1—N21.395 (3)C1B—C2B1.363 (18)
N1—C51.481 (3)C1B—H1BA0.9500
N2—C71.288 (3)C2B—C3B1.42 (2)
C9—C101.390 (3)C2B—H2BA0.9500
C9—C81.397 (3)C3B—H3BA0.9500
C9—H9A0.9500C5—C61.541 (3)
N3—C141.338 (3)C5—H5A1.0000
N3—H1N30.90 (4)C6—C71.512 (3)
N3—H2N30.89 (4)C6—H6A0.9900
C4—C3A1.379 (8)C6—H6B0.9900
C4—C3B1.381 (18)C7—C81.465 (3)
C4—C51.503 (3)C8—C131.405 (3)
C4—S1B1.696 (10)C10—C111.381 (4)
C4—S1A1.721 (3)C10—H10A0.9500
S1A—C1A1.713 (6)C11—C121.392 (4)
C1A—C2A1.368 (6)C12—C131.389 (4)
C1A—H1AA0.9500C12—H12A0.9500
C2A—C3A1.421 (12)C13—H13A0.9500
C14—N1—N2120.6 (2)C4—C3B—H3BA123.4
C14—N1—C5126.6 (2)C2B—C3B—H3BA123.4
N2—N1—C5112.60 (19)N1—C5—C4110.7 (2)
C7—N2—N1107.4 (2)N1—C5—C6100.05 (19)
C10—C9—C8120.7 (2)C4—C5—C6112.7 (2)
C10—C9—H9A119.6N1—C5—H5A111.0
C8—C9—H9A119.6C4—C5—H5A111.0
C14—N3—H1N3120 (3)C6—C5—H5A111.0
C14—N3—H2N3118 (3)C7—C6—C5101.7 (2)
H1N3—N3—H2N3119 (4)C7—C6—H6A111.4
C3A—C4—C3B103.6 (13)C5—C6—H6A111.4
C3A—C4—C5128.4 (5)C7—C6—H6B111.4
C3B—C4—C5128.0 (11)C5—C6—H6B111.4
C3B—C4—S1B110.0 (11)H6A—C6—H6B109.3
C5—C4—S1B121.9 (5)N2—C7—C8122.0 (2)
C3A—C4—S1A110.0 (5)N2—C7—C6113.8 (2)
C5—C4—S1A121.56 (18)C8—C7—C6124.2 (2)
S1B—C4—S1A116.4 (5)C9—C8—C13119.0 (2)
C1A—S1A—C492.7 (2)C9—C8—C7119.6 (2)
C2A—C1A—S1A111.6 (4)C13—C8—C7121.4 (2)
C2A—C1A—H1AA124.2C11—C10—C9119.2 (2)
S1A—C1A—H1AA124.2C11—C10—H10A120.4
C1A—C2A—C3A112.1 (5)C9—C10—H10A120.4
C1A—C2A—H2AA124.0C10—C11—C12121.4 (2)
C3A—C2A—H2AA124.0C10—C11—Cl1119.3 (2)
C4—C3A—C2A113.5 (6)C12—C11—Cl1119.3 (2)
C4—C3A—H3AA123.2C13—C12—C11119.1 (2)
C2A—C3A—H3AA123.2C13—C12—H12A120.4
C4—S1B—C1B93.5 (11)C11—C12—H12A120.4
C2B—C1B—S1B111.0 (19)C12—C13—C8120.5 (2)
C2B—C1B—H1BA124.5C12—C13—H13A119.8
S1B—C1B—H1BA124.5C8—C13—H13A119.8
C1B—C2B—C3B112 (2)N3—C14—N1116.4 (2)
C1B—C2B—H2BA124.0N3—C14—S2123.1 (2)
C3B—C2B—H2BA124.0N1—C14—S2120.50 (19)
C4—C3B—C2B113.3 (17)
C14—N1—N2—C7−163.4 (2)S1B—C4—C5—N1−89.2 (7)
C5—N1—N2—C712.0 (3)S1A—C4—C5—N186.6 (2)
C3A—C4—S1A—C1A−0.4 (7)C3A—C4—C5—C620.2 (8)
C3B—C4—S1A—C1A9(13)C3B—C4—C5—C6−161.3 (19)
C5—C4—S1A—C1A−178.3 (4)S1B—C4—C5—C621.9 (7)
S1B—C4—S1A—C1A−2.2 (7)S1A—C4—C5—C6−162.34 (18)
C4—S1A—C1A—C2A0.7 (8)N1—C5—C6—C719.1 (2)
S1A—C1A—C2A—C3A−0.8 (14)C4—C5—C6—C7−98.4 (2)
C3B—C4—C3A—C2A−1.1 (19)N1—N2—C7—C8179.6 (2)
C5—C4—C3A—C2A177.7 (7)N1—N2—C7—C62.6 (3)
S1B—C4—C3A—C2A165 (11)C5—C6—C7—N2−14.8 (3)
S1A—C4—C3A—C2A0.0 (12)C5—C6—C7—C8168.2 (2)
C1A—C2A—C3A—C40.5 (16)C10—C9—C8—C13−0.6 (4)
C3A—C4—S1B—C1B−17 (10)C10—C9—C8—C7179.3 (2)
C3B—C4—S1B—C1B−3(3)N2—C7—C8—C9−170.3 (2)
C5—C4—S1B—C1B174 (3)C6—C7—C8—C96.4 (4)
S1A—C4—S1B—C1B−2(3)N2—C7—C8—C139.6 (4)
C4—S1B—C1B—C2B3(6)C6—C7—C8—C13−173.7 (2)
S1B—C1B—C2B—C3B−3(8)C8—C9—C10—C110.8 (4)
C3A—C4—C3B—C2B4(4)C9—C10—C11—C12−0.3 (4)
C5—C4—C3B—C2B−175 (3)C9—C10—C11—Cl1179.84 (19)
S1B—C4—C3B—C2B2(4)C10—C11—C12—C13−0.4 (4)
S1A—C4—C3B—C2B−168 (16)Cl1—C11—C12—C13179.5 (2)
C1B—C2B—C3B—C40(7)C11—C12—C13—C80.5 (4)
C14—N1—C5—C4−86.0 (3)C9—C8—C13—C12−0.1 (4)
N2—N1—C5—C498.9 (2)C7—C8—C13—C12−179.9 (2)
C14—N1—C5—C6154.9 (2)N2—N1—C14—N3−3.3 (4)
N2—N1—C5—C6−20.1 (3)C5—N1—C14—N3−178.0 (2)
C3A—C4—C5—N1−90.9 (8)N2—N1—C14—S2175.10 (17)
C3B—C4—C5—N187.6 (19)C5—N1—C14—S20.4 (3)
Cg1 and Cg2 are the centroids of the S1A/C1A–C3A/C4 and S1B/C1B–C3B/C4 rings, respectively.
D—H···AD—HH···AD···AD—H···A
N3—H1N3···N20.90 (4)2.28 (4)2.656 (3)105 (3)
N3—H2N3···S2i0.89 (4)2.52 (4)3.400 (3)170 (3)
C5—H5A···S1Aii1.002.863.664 (3)138
C9—H9A···Cg1iii0.952.793.628 (4)148
C9—H9A···Cg2iii0.952.773.595 (18)145
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 and Cg2 are the centroids of the S1A/C1A–C3A/C4 and S1B/C1B–C3B/C4 rings, respectively.

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H1N3⋯N20.90 (4)2.28 (4)2.656 (3)105 (3)
N3—H2N3⋯S2i0.89 (4)2.52 (4)3.400 (3)170 (3)
C5—H5A⋯S1Aii1.002.863.664 (3)138
C9—H9ACg1iii0.952.793.628 (4)148
C9—H9ACg2iii0.952.773.595 (18)145

Symmetry codes: (i) ; (ii) ; (iii) .

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  1 in total

1.  5-(4-Eth-oxy-phen-yl)-3-(pyridin-2-yl)-4,5-dihydro-1H-pyrazole-1-carbothio-amide.

Authors:  Suchada Chantrapromma; Phonpawee Nonthason; Thitipone Suwunwong; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-02-24
  1 in total

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