Literature DB >> 22346881

Bis{2-[(2,4-dimethyl-phen-yl)imino-meth-yl]pyridine-κN,N'}bis-(thio-cyanato-κN)cadmium.

Mohammad Malekshahian, Mohamad Reza Talei Bavil Olyai, Behrouz Notash.   

Abstract

The title compound, [Cd(NCS)(2)(C(14)H(14)N(2))(2)], features crystallographic inversion symmetry with the Cd(II) ion located on a centre of inversion. The Cd(II) ion is six-coordinated in a slightly distorted octa-hedral geometry with the thiocyanate anions in axial positions. The angle between the benzene and pyridine rings is 69.64 (9)°. An inter-molecular C-H⋯S hydrogen bond stabilizes the crystal structure.

Entities:  

Year:  2012        PMID: 22346881      PMCID: PMC3274934          DOI: 10.1107/S1600536812002772

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the medicinal and pharmaceutical application of Schiff base compounds, see: Azza & Abu (2006 ▶); Dudek & Dudek (1966 ▶); Pandeya et al. (1999 ▶); Panneerselvam et al. (2005 ▶); Singh et al. (2006 ▶); Sridhar et al. (2001 ▶); Mladenova et al. (2002 ▶); Walsh et al. (1996 ▶). For the crystal structures of imino­pyridine complexes, see: Talei Bavil Olyai et al. (2008 ▶); Talei Bavil Olyai, Gholami Troujeni et al. (2010 ▶); Talei Bavil Olyai, Razzaghi Fard et al. (2010 ▶); Fallah Nejad et al. (2010 ▶); Loni et al. (2011 ▶).

Experimental

Crystal data

[Cd(NCS)2(C14H14N2)2] M = 649.13 Orthorhombic, a = 11.285 (2) Å b = 15.048 (3) Å c = 17.576 (4) Å V = 2984.7 (10) Å3 Z = 4 Mo Kα radiation μ = 0.90 mm−1 T = 298 K 0.45 × 0.4 × 0.4 mm

Data collection

Stoe IPDS II diffractometer Absorption correction: numerical (X-SHAPE and X-RED32; Stoe & Cie, 2005 ▶)T min = 0.406, T max = 0.430 12952 measured reflections 4016 independent reflections 2589 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.025 wR(F 2) = 0.075 S = 1.00 4016 reflections 181 parameters H-atom parameters constrained Δρmax = 0.20 e Å−3 Δρmin = −0.39 e Å−3 Data collection: X-AREA (Stoe & Cie, 2005 ▶); cell refinement: X-AREA; data reduction: X-AREA; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812002772/bt5786sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812002772/bt5786Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cd(NCS)2(C14H14N2)2]F(000) = 1320.0
Mr = 649.13Dx = 1.445 Mg m3
Orthorhombic, PbcnMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2n 2abCell parameters from 4016 reflections
a = 11.285 (2) Åθ = 2.3–29.2°
b = 15.048 (3) ŵ = 0.90 mm1
c = 17.576 (4) ÅT = 298 K
V = 2984.7 (10) Å3Block, yellow
Z = 40.45 × 0.4 × 0.4 mm
Stoe IPDS II diffractometer4016 independent reflections
Radiation source: fine-focus sealed tube2589 reflections with I > 2σ(I)
graphiteRint = 0.028
Detector resolution: 0.15 mm pixels mm-1θmax = 29.2°, θmin = 2.3°
rotation method scansh = −15→13
Absorption correction: numerical shape of crystal determined opticallyk = −20→18
Tmin = 0.406, Tmax = 0.430l = −20→24
12952 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.025H-atom parameters constrained
wR(F2) = 0.075w = 1/[σ2(Fo2) + (0.0406P)2 + 0.0706P] where P = (Fo2 + 2Fc2)/3
S = 1.00(Δ/σ)max = 0.001
4016 reflectionsΔρmax = 0.20 e Å3
181 parametersΔρmin = −0.39 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0048 (4)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cd10.50000.00000.50000.05113 (8)
S10.81414 (5)0.10677 (4)0.32032 (3)0.08019 (19)
N10.40527 (12)0.08917 (9)0.40838 (7)0.0506 (3)
N20.56541 (13)0.09386 (10)0.59987 (8)0.0522 (3)
N30.66504 (15)0.03255 (13)0.42813 (10)0.0687 (4)
C10.40926 (15)0.18477 (11)0.40648 (9)0.0484 (4)
C20.34254 (16)0.23310 (12)0.45844 (9)0.0537 (4)
C30.35215 (18)0.32527 (12)0.45528 (11)0.0607 (5)
H30.30750.35890.48920.073*
C40.42425 (17)0.36928 (12)0.40456 (11)0.0603 (5)
C50.49090 (17)0.31881 (14)0.35509 (12)0.0645 (5)
H50.54130.34690.32080.077*
C60.48400 (16)0.22711 (14)0.35565 (11)0.0585 (5)
H60.52950.19390.32190.070*
C70.2607 (2)0.18931 (16)0.51445 (12)0.0771 (6)
H7A0.20060.15690.48750.116*
H7B0.22410.23380.54570.116*
H7C0.30510.14920.54590.116*
C80.4294 (2)0.46981 (15)0.40349 (16)0.0888 (7)
H8A0.37750.49310.44190.133*
H8B0.40490.49110.35450.133*
H8C0.50900.48900.41340.133*
C90.37889 (16)0.04762 (12)0.34795 (10)0.0560 (4)
H90.35560.08000.30540.067*
C100.61622 (16)0.04953 (12)0.65736 (9)0.0530 (4)
C110.66386 (19)0.09220 (14)0.71998 (12)0.0700 (5)
H110.69920.05970.75880.084*
C120.6583 (2)0.18377 (15)0.72401 (13)0.0756 (6)
H120.68950.21390.76560.091*
C130.6062 (2)0.22922 (14)0.66575 (12)0.0698 (5)
H130.60160.29090.66700.084*
C140.56032 (18)0.18261 (13)0.60500 (11)0.0619 (5)
H140.52430.21420.56580.074*
C150.72622 (16)0.06333 (12)0.38293 (10)0.0522 (4)
U11U22U33U12U13U23
Cd10.06666 (13)0.05083 (12)0.03589 (10)−0.00527 (8)−0.00409 (7)0.00119 (7)
S10.0866 (4)0.0912 (4)0.0628 (3)−0.0209 (3)0.0033 (3)0.0211 (3)
N10.0607 (8)0.0512 (9)0.0399 (7)0.0054 (7)0.0001 (6)−0.0038 (6)
N20.0612 (9)0.0500 (9)0.0453 (8)−0.0035 (7)0.0000 (6)−0.0037 (6)
N30.0716 (11)0.0741 (11)0.0603 (10)−0.0121 (9)0.0033 (8)0.0023 (9)
C10.0585 (10)0.0476 (10)0.0390 (8)0.0059 (7)−0.0049 (7)−0.0004 (7)
C20.0597 (10)0.0555 (11)0.0459 (9)0.0052 (8)0.0011 (8)−0.0029 (8)
C30.0684 (11)0.0553 (11)0.0584 (10)0.0112 (9)−0.0002 (9)−0.0086 (9)
C40.0667 (11)0.0533 (11)0.0609 (11)−0.0013 (9)−0.0121 (9)0.0007 (9)
C50.0689 (12)0.0657 (13)0.0590 (11)−0.0056 (10)0.0020 (9)0.0101 (10)
C60.0706 (12)0.0607 (12)0.0442 (9)0.0069 (9)0.0049 (8)0.0000 (9)
C70.0892 (15)0.0687 (13)0.0733 (13)0.0118 (12)0.0293 (12)0.0053 (11)
C80.1038 (19)0.0544 (12)0.108 (2)−0.0100 (13)−0.0139 (15)0.0021 (13)
C90.0691 (11)0.0571 (12)0.0418 (9)0.0060 (9)−0.0044 (8)−0.0015 (8)
C100.0618 (10)0.0546 (12)0.0426 (9)0.0016 (8)−0.0012 (8)−0.0067 (8)
C110.0891 (14)0.0677 (14)0.0531 (10)0.0060 (11)−0.0140 (10)−0.0143 (10)
C120.0940 (16)0.0691 (15)0.0636 (11)−0.0024 (12)−0.0115 (12)−0.0225 (11)
C130.0852 (14)0.0517 (11)0.0727 (13)−0.0019 (10)0.0019 (11)−0.0165 (10)
C140.0712 (13)0.0538 (11)0.0607 (11)−0.0017 (9)−0.0021 (10)0.0008 (9)
C150.0588 (10)0.0489 (9)0.0491 (9)−0.0032 (8)−0.0094 (8)0.0014 (8)
Cd1—N3i2.3032 (17)C5—C61.382 (3)
Cd1—N32.3032 (17)C5—H50.9300
Cd1—N12.3529 (14)C6—H60.9300
Cd1—N1i2.3529 (14)C7—H7A0.9600
Cd1—N2i2.3708 (14)C7—H7B0.9600
Cd1—N22.3708 (14)C7—H7C0.9600
S1—C151.619 (2)C8—H8A0.9600
N1—C91.268 (2)C8—H8B0.9600
N1—C11.440 (2)C8—H8C0.9600
N2—C101.340 (2)C9—C10i1.466 (3)
N2—C141.340 (2)C9—H90.9300
N3—C151.150 (2)C10—C111.383 (2)
C1—C61.384 (3)C10—C9i1.466 (3)
C1—C21.389 (2)C11—C121.381 (3)
C2—C31.392 (2)C11—H110.9300
C2—C71.502 (3)C12—C131.365 (3)
C3—C41.377 (3)C12—H120.9300
C3—H30.9300C13—C141.378 (3)
C4—C51.378 (3)C13—H130.9300
C4—C81.514 (3)C14—H140.9300
N3i—Cd1—N3180.0C6—C5—H5119.5
N3i—Cd1—N197.43 (6)C5—C6—C1119.89 (18)
N3—Cd1—N182.57 (6)C5—C6—H6120.1
N3i—Cd1—N1i82.57 (6)C1—C6—H6120.1
N3—Cd1—N1i97.43 (6)C2—C7—H7A109.5
N1—Cd1—N1i180.00 (5)C2—C7—H7B109.5
N3i—Cd1—N2i91.58 (6)H7A—C7—H7B109.5
N3—Cd1—N2i88.42 (6)C2—C7—H7C109.5
N1—Cd1—N2i72.03 (5)H7A—C7—H7C109.5
N1i—Cd1—N2i107.97 (5)H7B—C7—H7C109.5
N3i—Cd1—N288.42 (6)C4—C8—H8A109.5
N3—Cd1—N291.58 (6)C4—C8—H8B109.5
N1—Cd1—N2107.97 (5)H8A—C8—H8B109.5
N1i—Cd1—N272.03 (5)C4—C8—H8C109.5
N2i—Cd1—N2180.0H8A—C8—H8C109.5
C9—N1—C1118.73 (15)H8B—C8—H8C109.5
C9—N1—Cd1113.50 (12)N1—C9—C10i122.43 (16)
C1—N1—Cd1124.85 (10)N1—C9—H9118.8
C10—N2—C14117.64 (16)C10i—C9—H9118.8
C10—N2—Cd1113.27 (11)N2—C10—C11122.37 (17)
C14—N2—Cd1129.08 (12)N2—C10—C9i117.69 (15)
C15—N3—Cd1161.83 (17)C11—C10—C9i119.94 (17)
C6—C1—C2120.91 (16)C12—C11—C10119.1 (2)
C6—C1—N1119.60 (16)C12—C11—H11120.4
C2—C1—N1119.40 (15)C10—C11—H11120.4
C1—C2—C3116.94 (17)C13—C12—C11118.8 (2)
C1—C2—C7122.30 (17)C13—C12—H12120.6
C3—C2—C7120.73 (17)C11—C12—H12120.6
C4—C3—C2123.43 (18)C12—C13—C14119.2 (2)
C4—C3—H3118.3C12—C13—H13120.4
C2—C3—H3118.3C14—C13—H13120.4
C3—C4—C5117.78 (18)N2—C14—C13122.92 (19)
C3—C4—C8120.7 (2)N2—C14—H14118.5
C5—C4—C8121.5 (2)C13—C14—H14118.5
C4—C5—C6121.01 (19)N3—C15—S1179.04 (17)
C4—C5—H5119.5
N3i—Cd1—N1—C9−97.15 (13)N1—C1—C2—C3178.39 (16)
N3—Cd1—N1—C982.85 (13)C6—C1—C2—C7−179.92 (19)
N2i—Cd1—N1—C9−7.89 (12)N1—C1—C2—C7−3.3 (3)
N2—Cd1—N1—C9172.11 (12)C1—C2—C3—C4−0.7 (3)
N3i—Cd1—N1—C1102.54 (13)C7—C2—C3—C4−179.06 (19)
N3—Cd1—N1—C1−77.46 (13)C2—C3—C4—C5−0.7 (3)
N2i—Cd1—N1—C1−168.21 (13)C2—C3—C4—C8179.22 (19)
N2—Cd1—N1—C111.79 (13)C3—C4—C5—C61.0 (3)
N3i—Cd1—N2—C1079.80 (12)C8—C4—C5—C6−178.9 (2)
N3—Cd1—N2—C10−100.20 (12)C4—C5—C6—C10.0 (3)
N1—Cd1—N2—C10177.10 (12)C2—C1—C6—C5−1.4 (3)
N1i—Cd1—N2—C10−2.90 (12)N1—C1—C6—C5−178.07 (16)
N3i—Cd1—N2—C14−101.74 (16)C1—N1—C9—C10i173.99 (15)
N3—Cd1—N2—C1478.26 (16)Cd1—N1—C9—C10i12.4 (2)
N1—Cd1—N2—C14−4.44 (17)C14—N2—C10—C11−0.9 (3)
N1i—Cd1—N2—C14175.56 (17)Cd1—N2—C10—C11177.80 (15)
N1—Cd1—N3—C157.1 (5)C14—N2—C10—C9i179.59 (16)
N1i—Cd1—N3—C15−172.9 (5)Cd1—N2—C10—C9i−1.76 (19)
N2i—Cd1—N3—C1579.2 (5)N2—C10—C11—C120.5 (3)
N2—Cd1—N3—C15−100.8 (5)C9i—C10—C11—C12−179.9 (2)
C9—N1—C1—C6−57.6 (2)C10—C11—C12—C13−0.2 (3)
Cd1—N1—C1—C6101.74 (16)C11—C12—C13—C140.3 (3)
C9—N1—C1—C2125.68 (18)C10—N2—C14—C130.9 (3)
Cd1—N1—C1—C2−74.95 (18)Cd1—N2—C14—C13−177.48 (15)
C6—C1—C2—C31.7 (3)C12—C13—C14—N2−0.7 (3)
D—H···AD—HH···AD···AD—H···A
C12—H12···S1ii0.932.873.591 (2)136.
Table 1

Selected bond lengths (Å)

Cd1—N32.3032 (17)
Cd1—N12.3529 (14)
Cd1—N22.3708 (14)

Symmetry code: (i) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C12—H12⋯S1ii0.932.873.591 (2)136

Symmetry code: (ii) .

  6 in total

1.  Synthesis, antibacterial, antifungal and anti-HIV activities of Schiff and Mannich bases derived from isatin derivatives and N-[4-(4'-chlorophenyl)thiazol-2-yl] thiosemicarbazide.

Authors:  S N Pandeya; D Sriram; G Nath; E DeClercq
Journal:  Eur J Pharm Sci       Date:  1999-10       Impact factor: 4.384

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Synthesis of Schiff bases of 4-(4-aminophenyl)-morpholine as potential antimicrobial agents.

Authors:  Perumal Panneerselvam; Rajasree R Nair; Gudaparthi Vijayalakshmi; Ekambaram Harihara Subramanian; Seshaiah Krishnan Sridhar
Journal:  Eur J Med Chem       Date:  2005-02       Impact factor: 6.514

4.  Synthesis and antibacterial screening of hydrazones, Schiff and Mannich bases of isatin derivatives.

Authors:  S K Sridhar; M Saravanan; A Ramesh
Journal:  Eur J Med Chem       Date:  2001 Jul-Aug       Impact factor: 6.514

5.  {2-[(2,5-Dimethyl-phen-yl)imino-methyl]pyridine-κN,N'}diiodidozinc(II).

Authors:  Mohamad Reza Talei Bavil Olyai; Saeed Dehghanpour; Bita Hoormehr; Fahimeh Gholami; Hamid Reza Khavasi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-08-23

6.  Dichlorido[2,4-dimethyl-N-(pyridin-2-yl-methyl-idene)aniline-κN,N']dimethyl-tin(IV).

Authors:  Sedigheh Loni; Mohamad Reza Talei Bavil Olyai; Fatemeh Roodbari; Behrouz Notash
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-26
  6 in total
  3 in total

1.  Crystal structures of di-bromido-{N-[(pyridin-2-yl-κN)methyl-idene]picolinohydrazide-κ2N',O}cadmium methanol monosolvate and di-iodido{N-[(pyridin-2-yl-κN)methyl-idene]picolinohydrazide-κ2N',O}cadmium.

Authors:  Ali Akbar Khandar; Farhad Akbari Afkhami; Harald Krautscheid; Kenneth Aase Kristoffersen; Zeliha Atioğlu; Mehmet Akkurt; Carl Henrik Görbitz
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2017-04-13

2.  Crystal structure of bis-{N'-[(E)-4-hy-droxy-benzyl-idene]pyridine-4-carbohydrazide-κN1}di-iodidocadmium methanol disolvate.

Authors:  Farhad Akbari Afkhami; Harald Krautscheid; Zeliha Atioğlu; Mehmet Akkurt
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2017-01-01

3.  Crystal structure and Hirshfeld surface analysis of di-iodido-{N'-[(E)-(phen-yl)(pyridin-2-yl-κN)methylidene]pyridine-2-carbohydrazide-κ2 N',O}cadmium(II).

Authors:  Zeliha Atioğlu; Farhad Akbari Afkhami; Mehmet Akkurt; Ali Akbar Khandar; Duane Choquesillo-Lazarte
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2019-06-25
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.