Literature DB >> 22341438

CoSMoS unravels mysteries of transcription initiation.

Richard L Gourse1, Robert Landick.   

Abstract

Using a fluorescence method called colocalization single-molecule spectroscopy (CoSMoS), Friedman and Gelles dissect the kinetics of transcription initiation at a bacterial promoter. Ultimately, CoSMoS could greatly aid the study of the effects of DNA sequence and transcription factors on both prokaryotic and eukaryotic promoters. Copyright Â
© 2012 Elsevier Inc. All rights reserved.

Entities:  

Year:  2012        PMID： 22341438      PMCID： PMC3681408          DOI： 10.1016/j.cell.2012.01.042

Source DB:  PubMed          Journal:  Cell        ISSN： 0092-8674            Impact factor:   41.582


  9 in total

Review 1.  The regulation of bacterial transcription initiation.

Authors:  Douglas F Browning; Stephen J Busby
Journal:  Nat Rev Microbiol       Date:  2004-01       Impact factor: 60.633

2.  Structural basis for promoter-10 element recognition by the bacterial RNA polymerase σ subunit.

Authors:  Andrey Feklistov; Seth A Darst
Journal:  Cell       Date:  2011-12-01       Impact factor: 41.582

Review 3.  Modus operandi of the bacterial RNA polymerase containing the sigma54 promoter-specificity factor.

Authors:  Sivaramesh Wigneshweraraj; Daniel Bose; Patricia C Burrows; Nicolas Joly; Jörg Schumacher; Mathieu Rappas; Tillmann Pape; Xiaodong Zhang; Peter Stockley; Konstantin Severinov; Martin Buck
Journal:  Mol Microbiol       Date:  2008-03-04       Impact factor: 3.501

Review 4.  Advances in bacterial promoter recognition and its control by factors that do not bind DNA.

Authors:  Shanil P Haugen; Wilma Ross; Richard L Gourse
Journal:  Nat Rev Microbiol       Date:  2008-06-03       Impact factor: 60.633

5.  Mechanism of bacterial transcription initiation: RNA polymerase - promoter binding, isomerization to initiation-competent open complexes, and initiation of RNA synthesis.

Authors:  Ruth M Saecker; M Thomas Record; Pieter L Dehaseth
Journal:  J Mol Biol       Date:  2011-03-01       Impact factor: 5.469

6.  Rate-limiting steps in RNA chain initiation.

Authors:  W R McClure
Journal:  Proc Natl Acad Sci U S A       Date:  1980-10       Impact factor: 11.205

7.  Mechanism of transcription initiation at an activator-dependent promoter defined by single-molecule observation.

Authors:  Larry J Friedman; Jeff Gelles
Journal:  Cell       Date:  2012-02-17       Impact factor: 41.582

8.  Real-time DNA sequencing from single polymerase molecules.

Authors:  John Eid; Adrian Fehr; Jeremy Gray; Khai Luong; John Lyle; Geoff Otto; Paul Peluso; David Rank; Primo Baybayan; Brad Bettman; Arkadiusz Bibillo; Keith Bjornson; Bidhan Chaudhuri; Frederick Christians; Ronald Cicero; Sonya Clark; Ravindra Dalal; Alex Dewinter; John Dixon; Mathieu Foquet; Alfred Gaertner; Paul Hardenbol; Cheryl Heiner; Kevin Hester; David Holden; Gregory Kearns; Xiangxu Kong; Ronald Kuse; Yves Lacroix; Steven Lin; Paul Lundquist; Congcong Ma; Patrick Marks; Mark Maxham; Devon Murphy; Insil Park; Thang Pham; Michael Phillips; Joy Roy; Robert Sebra; Gene Shen; Jon Sorenson; Austin Tomaney; Kevin Travers; Mark Trulson; John Vieceli; Jeffrey Wegener; Dawn Wu; Alicia Yang; Denis Zaccarin; Peter Zhao; Frank Zhong; Jonas Korlach; Stephen Turner
Journal:  Science       Date:  2008-11-20       Impact factor: 47.728

9.  Ordered and dynamic assembly of single spliceosomes.

Authors:  Aaron A Hoskins; Larry J Friedman; Sarah S Gallagher; Daniel J Crawford; Eric G Anderson; Richard Wombacher; Nicholas Ramirez; Virginia W Cornish; Jeff Gelles; Melissa J Moore
Journal:  Science       Date:  2011-03-11       Impact factor: 47.728
  9 in total
  4 in total

1.  Mismatch repair protein hMSH2-hMSH6 recognizes mismatches and forms sliding clamps within a D-loop recombination intermediate.

Authors:  Masayoshi Honda; Yusuke Okuno; Sarah R Hengel; Juana V Martín-López; Christopher P Cook; Ravindra Amunugama; Randal J Soukup; Shyamal Subramanyam; Richard Fishel; Maria Spies
Journal:  Proc Natl Acad Sci U S A       Date:  2014-01-06       Impact factor: 11.205

2.  Kinetics of transcription initiation directed by multiple cis-regulatory elements on the glnAp2 promoter.

Authors:  Yaolai Wang; Feng Liu; Wei Wang
Journal:  Nucleic Acids Res       Date:  2016-11-29       Impact factor: 16.971

Review 3.  Visualizing cellular machines with colocalization single molecule microscopy.

Authors:  Joshua D Larson; Margaret L Rodgers; Aaron A Hoskins
Journal:  Chem Soc Rev       Date:  2013-08-22       Impact factor: 54.564

4.  A Quantitative Theoretical Framework For Protein-Induced Fluorescence Enhancement-Förster-Type Resonance Energy Transfer (PIFE-FRET).

Authors:  Eitan Lerner; Evelyn Ploetz; Johannes Hohlbein; Thorben Cordes; Shimon Weiss
Journal:  J Phys Chem B       Date:  2016-05-26       Impact factor: 2.991
  4 in total

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