Literature DB >> 22336527

Regulation of biological accuracy, precision, and memory by plant chromatin organization.

Jason T Huff1, Daniel Zilberman.   

Abstract

Accumulating evidence points toward diverse functions for plant chromatin. Remarkable progress has been made over the last few years in elucidating the mechanisms for a number of these functions. Activity of the histone demethylase IBM1 accurately targets DNA methylation to silent repeats and transposable elements, not to genes. A genetic screen uncovered the surprising role of H2A.Z-containing nucleosomes in sensing precise differences in ambient temperature and consequent gene regulation. Precise maintenance of chromosome number is assured by a histone modification that suppresses inappropriate DNA replication and by centromeric histone H3 regulation of chromosome segregation. Histones and noncoding RNAs regulate FLOWERING LOCUS C, the expression of which quantitatively measures the duration of cold exposure, functioning as memory of winter. These findings are a testament to the power of using plants to research chromatin organization, and demonstrate examples of how chromatin functions to achieve biological accuracy, precision, and memory.
Copyright © 2012 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 22336527     DOI: 10.1016/j.gde.2012.01.007

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  12 in total

1.  Dnmt1-independent CG methylation contributes to nucleosome positioning in diverse eukaryotes.

Authors:  Jason T Huff; Daniel Zilberman
Journal:  Cell       Date:  2014-03-13       Impact factor: 41.582

Review 2.  Gene activation and cell fate control in plants: a chromatin perspective.

Authors:  Julia Engelhorn; Robert Blanvillain; Cristel C Carles
Journal:  Cell Mol Life Sci       Date:  2014-04-09       Impact factor: 9.261

3.  Epigenetic Thpok silencing limits the time window to choose CD4(+) helper-lineage fate in the thymus.

Authors:  Hirokazu Tanaka; Taku Naito; Sawako Muroi; Wooseok Seo; Risa Chihara; Chizuko Miyamoto; Ryo Kominami; Ichiro Taniuchi
Journal:  EMBO J       Date:  2013-03-12       Impact factor: 11.598

4.  Pleiotropic phenotypes of the salt-tolerant and cytosine hypomethylated leafless inflorescence, evergreen dwarf and irregular leaf lamina mutants of Catharanthus roseus possessing Mendelian inheritance.

Authors:  Renu Kumari; Vishakha Sharma; Vinay Sharma; Sushil Kumar
Journal:  J Genet       Date:  2013-12       Impact factor: 1.166

Review 5.  Roles, and establishment, maintenance and erasing of the epigenetic cytosine methylation marks in plants.

Authors:  Sushil Kumar; Renu Kumari; Vishakha Sharma; Vinay Sharma
Journal:  J Genet       Date:  2013-12       Impact factor: 1.166

6.  Antioxidant Regulation and DNA Methylation Dynamics During Mikania micrantha Seed Germination Under Cold Stress.

Authors:  Can Cui; Zhen Wang; Yingjuan Su; Ting Wang
Journal:  Front Plant Sci       Date:  2022-04-08       Impact factor: 6.627

7.  Chilling- and Freezing-Induced Alterations in Cytosine Methylation and Its Association with the Cold Tolerance of an Alpine Subnival Plant, Chorispora bungeana.

Authors:  Yuan Song; Lijun Liu; Yanhao Feng; Yunzhu Wei; Xiule Yue; Wenliang He; Hua Zhang; Lizhe An
Journal:  PLoS One       Date:  2015-08-13       Impact factor: 3.240

8.  SHOOT GROWTH1 maintains Arabidopsis epigenomes by regulating IBM1.

Authors:  Vincent Coustham; Daniela Vlad; Aurélie Deremetz; Isabelle Gy; Francisco A Cubillos; Envel Kerdaffrec; Olivier Loudet; Nicolas Bouché
Journal:  PLoS One       Date:  2014-01-03       Impact factor: 3.240

9.  Mutations in EDM2 selectively affect silencing states of transposons and induce plant developmental plasticity.

Authors:  Tokuji Tsuchiya; Thomas Eulgem
Journal:  Sci Rep       Date:  2013       Impact factor: 4.379

10.  Whole transcriptome profiling of the vernalization process in Lilium longiflorum (cultivar White Heaven) bulbs.

Authors:  Carlos Villacorta-Martin; Francisco F Núñez de Cáceres González; Jorn de Haan; Kitty Huijben; Paul Passarinho; Maya Lugassi-Ben Hamo; Michele Zaccai
Journal:  BMC Genomics       Date:  2015-07-28       Impact factor: 3.969

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