Literature DB >> 22332969

Configurational analysis of tetracyclic dimeric pyrrole-imidazole alkaloids using a floating chirality approach.

Matthias Köck1, Gesine Schmidt, Ian B Seiple, Phil S Baran.   

Abstract

The structure elucidation of the palau'amine congener tetrabromostyloguanidine (1), which used interproton distances from ROESY spectra as restraints in a computational approach, the so-called fc-rDG/DDD method, led to a revision of the relative configuration of palau'amine (2) and its congeners in 2007. The recent total synthesis of (±)-palau'amine (2) subsequently confirmed the computed structural revision of the relative configuration. In order to test a broader application range of the fc-rDG/DDD method, the present study investigated two additional dimeric pyrrole-imidazole alkaloids, axinellamine A (3) and 3,7-epi-massadine chloride (4). These calculations allowed the simultaneous assignment of the relative configuration for all eight stereogenic centers of compounds 3 and 4 without using any information from the reported configurations. In contrast to the palau'amine congeners, the fc-rDG/DDD method confirmed the relative configuration originally described for axinellamine A (3) and 3,7-epi-massadine chloride (4).

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Year:  2012        PMID: 22332969      PMCID: PMC3315375          DOI: 10.1021/np200514g

Source DB:  PubMed          Journal:  J Nat Prod        ISSN: 0163-3864            Impact factor:   4.050


  16 in total

1.  Total synthesis of (+/-)-axinellamines A and B.

Authors:  Daniel P O'Malley; Junichiro Yamaguchi; Ian S Young; Ian B Seiple; Phil S Baran
Journal:  Angew Chem Int Ed Engl       Date:  2008       Impact factor: 15.336

2.  The pursuit of palau'amine.

Authors:  Matthias Köck; Achim Grube; Ian B Seiple; Phil S Baran
Journal:  Angew Chem Int Ed Engl       Date:  2007       Impact factor: 15.336

Review 3.  An evaluation of computational strategies for use in the determination of protein structure from distance constraints obtained by nuclear magnetic resonance.

Authors:  T F Havel
Journal:  Prog Biophys Mol Biol       Date:  1991       Impact factor: 3.667

4.  Determination of the complete three-dimensional structure of the trypsin inhibitor from squash seeds in aqueous solution by nuclear magnetic resonance and a combination of distance geometry and dynamical simulated annealing.

Authors:  T A Holak; D Gondol; J Otlewski; T Wilusz
Journal:  J Mol Biol       Date:  1989-12-05       Impact factor: 5.469

5.  Molecular dynamics simulation techniques for determination of molecular structures from nuclear magnetic resonance data.

Authors:  R M Scheek; W F van Gunsteren; R Kaptein
Journal:  Methods Enzymol       Date:  1989       Impact factor: 1.600

Review 6.  Protein structures from NMR.

Authors:  R Kaptein; R Boelens; R M Scheek; W F van Gunsteren
Journal:  Biochemistry       Date:  1988-07-26       Impact factor: 3.162

7.  Structure determination of a key intermediate of the enantioselective Pd complex catalyzed allylic substitution reaction

Authors: 
Journal:  Chemistry       Date:  2000-09-01       Impact factor: 5.236

8.  Total syntheses of (+/-)-massadine and massadine chloride.

Authors:  Shun Su; Ian B Seiple; Ian S Young; Phil S Baran
Journal:  J Am Chem Soc       Date:  2008-12-10       Impact factor: 15.419

9.  Massadine, a novel geranylgeranyltransferase type I inhibitor from the marine sponge Stylissa aff. massa.

Authors:  Shinichi Nishimura; Shigeki Matsunaga; Mitsuyoshi Shibazaki; Kenichi Suzuki; Kazuo Furihata; Rob W M van Soest; Nobuhiro Fusetani
Journal:  Org Lett       Date:  2003-06-26       Impact factor: 6.005

10.  Total synthesis of palau'amine.

Authors:  Ian B Seiple; Shun Su; Ian S Young; Chad A Lewis; Junichiro Yamaguchi; Phil S Baran
Journal:  Angew Chem Int Ed Engl       Date:  2010-02-01       Impact factor: 15.336

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  4 in total

Review 1.  Dimeric pyrrole-imidazole alkaloids: synthetic approaches and biosynthetic hypotheses.

Authors:  Xiao Wang; Zhiqiang Ma; Xiaolei Wang; Saptarshi De; Yuyong Ma; Chuo Chen
Journal:  Chem Commun (Camb)       Date:  2014-05-15       Impact factor: 6.222

2.  The Advanced Floating Chirality Distance Geometry Approach-How Anisotropic NMR Parameters Can Support the Determination of the Relative Configuration of Natural Products.

Authors:  Matthias Köck; Michael Reggelin; Stefan Immel
Journal:  Mar Drugs       Date:  2020-06-24       Impact factor: 5.118

3.  Model-Free Approach for the Configurational Analysis of Marine Natural Products.

Authors:  Matthias Köck; Michael Reggelin; Stefan Immel
Journal:  Mar Drugs       Date:  2021-05-21       Impact factor: 5.118

4.  NMR-Based Configurational Assignments of Natural Products: Gibbs Sampling and Bayesian Inference Using Floating Chirality Distance Geometry Calculations.

Authors:  Stefan Immel; Matthias Köck; Michael Reggelin
Journal:  Mar Drugs       Date:  2021-12-22       Impact factor: 5.118

  4 in total

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