Literature DB >> 22330449

Wavelet analysis for single molecule localization microscopy.

I Izeddin1, J Boulanger, V Racine, C G Specht, A Kechkar, D Nair, A Triller, D Choquet, M Dahan, J B Sibarita.   

Abstract

Localization of single molecules in microscopy images is a key step in quantitative single particle data analysis. Among them, single molecule based super-resolution optical microscopy techniques require high localization accuracy as well as computation of large data sets in the order of 10(5) single molecule detections to reconstruct a single image. We hereby present an algorithm based on image wavelet segmentation and single particle centroid determination, and compare its performance with the commonly used gaussian fitting of the point spread function. We performed realistic simulations at different signal-to-noise ratios and particle densities and show that the calculation time using the wavelet approach can be more than one order of magnitude faster than that of gaussian fitting without a significant degradation of the localization accuracy, from 1 nm to 4 nm in our range of study. We propose a simulation-based estimate of the resolution of an experimental single molecule acquisition.

Mesh:

Year:  2012        PMID: 22330449     DOI: 10.1364/OE.20.002081

Source DB:  PubMed          Journal:  Opt Express        ISSN: 1094-4087            Impact factor:   3.894


  67 in total

1.  Super-resolution imaging reveals that AMPA receptors inside synapses are dynamically organized in nanodomains regulated by PSD95.

Authors:  Deepak Nair; Eric Hosy; Jennifer D Petersen; Audrey Constals; Gregory Giannone; Daniel Choquet; Jean-Baptiste Sibarita
Journal:  J Neurosci       Date:  2013-08-07       Impact factor: 6.167

2.  Subnanometer structure and function from ion beams through complex fluidics to fluorescent particles.

Authors:  Kuo-Tang Liao; Joshua Schumacher; Henri J Lezec; Samuel M Stavis
Journal:  Lab Chip       Date:  2017-12-19       Impact factor: 6.799

3.  3D multifocus astigmatism and compressed sensing (3D MACS) based superresolution reconstruction.

Authors:  Jiaqing Huang; Mingzhai Sun; Kristyn Gumpper; Yuejie Chi; Jianjie Ma
Journal:  Biomed Opt Express       Date:  2015-02-23       Impact factor: 3.732

4.  Dynamic association of calcium channel subunits at the cellular membrane.

Authors:  Andreas Voigt; Romy Freund; Jennifer Heck; Markus Missler; Gerald J Obermair; Ulrich Thomas; Martin Heine
Journal:  Neurophotonics       Date:  2016-11-03       Impact factor: 3.593

5.  Phase stretch transform for super-resolution localization microscopy.

Authors:  Tali Ilovitsh; Bahram Jalali; Mohammad H Asghari; Zeev Zalevsky
Journal:  Biomed Opt Express       Date:  2016-09-19       Impact factor: 3.732

6.  Integrins β1 and β3 exhibit distinct dynamic nanoscale organizations inside focal adhesions.

Authors:  Olivier Rossier; Vivien Octeau; Jean-Baptiste Sibarita; Cécile Leduc; Béatrice Tessier; Deepak Nair; Volker Gatterdam; Olivier Destaing; Corinne Albigès-Rizo; Robert Tampé; Laurent Cognet; Daniel Choquet; Brahim Lounis; Grégory Giannone
Journal:  Nat Cell Biol       Date:  2012-09-30       Impact factor: 28.824

7.  Heterogeneity of AMPA receptor trafficking and molecular interactions revealed by superresolution analysis of live cell imaging.

Authors:  Nathanael Hoze; Deepak Nair; Eric Hosy; Christian Sieben; Suliana Manley; Andreas Herrmann; Jean-Baptiste Sibarita; Daniel Choquet; David Holcman
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-03       Impact factor: 11.205

8.  The SNARE Sec22b has a non-fusogenic function in plasma membrane expansion.

Authors:  Maja Petkovic; Aymen Jemaiel; Frédéric Daste; Christian G Specht; Ignacio Izeddin; Daniela Vorkel; Jean-Marc Verbavatz; Xavier Darzacq; Antoine Triller; Karl H Pfenninger; David Tareste; Catherine L Jackson; Thierry Galli
Journal:  Nat Cell Biol       Date:  2014-04-06       Impact factor: 28.824

Review 9.  High-density single-particle tracking: quantifying molecule organization and dynamics at the nanoscale.

Authors:  Jean-Baptiste Sibarita
Journal:  Histochem Cell Biol       Date:  2014-03-27       Impact factor: 4.304

10.  Nanoscale segregation of actin nucleation and elongation factors determines dendritic spine protrusion.

Authors:  Anaël Chazeau; Amine Mehidi; Deepak Nair; Jérémie J Gautier; Cécile Leduc; Ingrid Chamma; Frieda Kage; Adel Kechkar; Olivier Thoumine; Klemens Rottner; Daniel Choquet; Alexis Gautreau; Jean-Baptiste Sibarita; Grégory Giannone
Journal:  EMBO J       Date:  2014-10-07       Impact factor: 11.598

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