Literature DB >> 22328761

Genome sequence of Paenibacillus terrae HPL-003, a xylanase-producing bacterium isolated from soil found in forest residue.

Sang Heum Shin1, Sewhan Kim, Jae Young Kim, Ha Young Song, Soo Jin Cho, Dal Rye Kim, Kee-In Lee, Hee Kyung Lim, No-Joong Park, In Taek Hwang, Kap-Seok Yang.   

Abstract

This article reports on the full genome sequence of Paenibacillus terrae HPL-003, which is a gram-positive, endospore-forming, xylanase-producing bacterium isolated from soil found in forest residue on Gara Mountain. The strain HPL-003 contains 6,083,395 bp with a G+C content of 46.77 mol%, 2,633 protein-coding genes, and 117 structural RNAs.

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Year:  2012        PMID: 22328761      PMCID: PMC3294771          DOI: 10.1128/JB.06668-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  9 in total

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Journal:  Nature       Date:  2005-07-31       Impact factor: 49.962

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Journal:  Int J Syst Evol Microbiol       Date:  2007-10       Impact factor: 2.747

Review 3.  Recombinant organisms for production of industrial products.

Authors:  Jose-Luis Adrio; Arnold L Demain
Journal:  Bioeng Bugs       Date:  2009-11-02

4.  Selection of conditions for cellulase and xylanase extraction from switchgrass colonized by Acidothermus cellulolyticus.

Authors:  Farzaneh Rezaei; Lawrence D Joh; Hiroyuki Kashima; Amitha P Reddy; Jean S VanderGheynst
Journal:  Appl Biochem Biotechnol       Date:  2011-02-12       Impact factor: 2.926

5.  Cellulase-xylanase synergy in designer cellulosomes for enhanced degradation of a complex cellulosic substrate.

Authors:  Sarah Moraïs; Yoav Barak; Jonathan Caspi; Yitzhak Hadar; Raphael Lamed; Yuval Shoham; David B Wilson; Edward A Bayer
Journal:  mBio       Date:  2010-12-14       Impact factor: 7.867

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7.  Overcoming the recalcitrance for the conversion of kenaf pulp to glucose via microwave-assisted pre-treatment processes.

Authors:  Beng Guat Ooi; Ashley L Rambo; Miguel A Hurtado
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8.  The enhancement of enzymatic hydrolysis of lignocellulosic substrates by the addition of accessory enzymes such as xylanase: is it an additive or synergistic effect?

Authors:  Jinguang Hu; Valdeir Arantes; Jack N Saddler
Journal:  Biotechnol Biofuels       Date:  2011-10-05       Impact factor: 6.040

9.  NCBI Reference Sequences: current status, policy and new initiatives.

Authors:  Kim D Pruitt; Tatiana Tatusova; William Klimke; Donna R Maglott
Journal:  Nucleic Acids Res       Date:  2008-10-16       Impact factor: 16.971

  9 in total
  11 in total

1.  High-throughput screening of multispecies biofilm formation and quantitative PCR-based assessment of individual species proportions, useful for exploring interspecific bacterial interactions.

Authors:  Dawei Ren; Jonas Stenløkke Madsen; Claudia I de la Cruz-Perera; Lasse Bergmark; Søren J Sørensen; Mette Burmølle
Journal:  Microb Ecol       Date:  2013-12-12       Impact factor: 4.552

2.  Draft Genome Sequences of Paenibacillus polymyxa NRRL B-30509 and Paenibacillus terrae NRRL B-30644, Strains from a Poultry Environment That Produce Tridecaptin A and Paenicidins.

Authors:  Marco J van Belkum; Christopher T Lohans; John C Vederas
Journal:  Genome Announc       Date:  2015-04-23

3.  Introduction of Non-Native Pollinators Can Lead to Trans-Continental Movement of Bee-Associated Fungi.

Authors:  Shannon M Hedtke; Eleanor J Blitzer; Graham A Montgomery; Bryan N Danforth
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4.  Comparative genomic analysis of N2-fixing and non-N2-fixing Paenibacillus spp.: organization, evolution and expression of the nitrogen fixation genes.

Authors:  Jian-Bo Xie; Zhenglin Du; Lanqing Bai; Changfu Tian; Yunzhi Zhang; Jiu-Yan Xie; Tianshu Wang; Xiaomeng Liu; Xi Chen; Qi Cheng; Sanfeng Chen; Jilun Li
Journal:  PLoS Genet       Date:  2014-03-20       Impact factor: 5.917

5.  Development and validation of an rDNA operon based primer walking strategy applicable to de novo bacterial genome finishing.

Authors:  Alexander W Eastman; Ze-Chun Yuan
Journal:  Front Microbiol       Date:  2015-01-21       Impact factor: 5.640

6.  Genome analysis of Paenibacillus polymyxa A18 gives insights into the features associated with its adaptation to the termite gut environment.

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7.  Draft Genome Sequence of the Efficient Bioflocculant-Producing Bacterium Paenibacillus sp. Strain A9.

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8.  Comparative and genetic analysis of the four sequenced Paenibacillus polymyxa genomes reveals a diverse metabolism and conservation of genes relevant to plant-growth promotion and competitiveness.

Authors:  Alexander W Eastman; David E Heinrichs; Ze-Chun Yuan
Journal:  BMC Genomics       Date:  2014-10-03       Impact factor: 3.969

9.  Decoding the complete arsenal for cellulose and hemicellulose deconstruction in the highly efficient cellulose decomposer Paenibacillus O199.

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Journal:  Biotechnol Biofuels       Date:  2016-05-14       Impact factor: 6.040

10.  A novel type bacterial flagellar motor that can use divalent cations as a coupling ion.

Authors:  Riku Imazawa; Yuka Takahashi; Wataru Aoki; Motohiko Sano; Masahiro Ito
Journal:  Sci Rep       Date:  2016-01-22       Impact factor: 4.379

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