Literature DB >> 22312585

Exploratory Dijkstra forest based automatic vessel segmentation: applications in video indirect ophthalmoscopy (VIO).

Rolando Estrada, Carlo Tomasi, Michelle T Cabrera, David K Wallace, Sharon F Freedman, Sina Farsiu.   

Abstract

We present a methodology for extracting the vascular network in the human retina using Dijkstra's shortest-path algorithm. Our method preserves vessel thickness, requires no manual intervention, and follows vessel branching naturally and efficiently. To test our method, we constructed a retinal video indirect ophthalmoscopy (VIO) image database from pediatric patients and compared the segmentations achieved by our method and state-of-the-art approaches to a human-drawn gold standard. Our experimental results show that our algorithm outperforms prior state-of-the-art methods, for both single VIO frames and automatically generated, large field-of-view enhanced mosaics. We have made the corresponding dataset and source code freely available online.

Entities:  

Keywords:  (100.0100) Image processing; (100.2960) Image analysis; (170.4470) Ophthalmology

Year:  2012        PMID: 22312585      PMCID: PMC3269849          DOI: 10.1364/BOE.3.000327

Source DB:  PubMed          Journal:  Biomed Opt Express        ISSN: 2156-7085            Impact factor:   3.732


  17 in total

1.  Locating blood vessels in retinal images by piecewise threshold probing of a matched filter response.

Authors:  A Hoover; V Kouznetsova; M Goldbaum
Journal:  IEEE Trans Med Imaging       Date:  2000-03       Impact factor: 10.048

2.  Ridge-based vessel segmentation in color images of the retina.

Authors:  Joes Staal; Michael D Abràmoff; Meindert Niemeijer; Max A Viergever; Bram van Ginneken
Journal:  IEEE Trans Med Imaging       Date:  2004-04       Impact factor: 10.048

3.  A new supervised method for blood vessel segmentation in retinal images by using gray-level and moment invariants-based features.

Authors:  Diego Marin; Arturo Aquino; Manuel Emilio Gegundez-Arias; José Manuel Bravo
Journal:  IEEE Trans Med Imaging       Date:  2010-08-09       Impact factor: 10.048

4.  Computer-assisted measurement of retinal vascular width and tortuosity in retinopathy of prematurity.

Authors:  Amanda E Kiely; David K Wallace; Sharon F Freedman; Zheen Zhao
Journal:  Arch Ophthalmol       Date:  2010-07

5.  Retinal vessel segmentation using the 2-D Gabor wavelet and supervised classification.

Authors:  João V B Soares; Jorge J G Leandro; Roberto M Cesar Júnior; Herbert F Jelinek; Michael J Cree
Journal:  IEEE Trans Med Imaging       Date:  2006-09       Impact factor: 10.048

6.  Retinal blood vessel segmentation using line operators and support vector classification.

Authors:  Elisa Ricci; Renzo Perfetti
Journal:  IEEE Trans Med Imaging       Date:  2007-10       Impact factor: 10.048

7.  Vessels as 4-D curves: global minimal 4-D paths to extract 3-D tubular surfaces and centerlines.

Authors:  Hua Li; Anthony Yezzi
Journal:  IEEE Trans Med Imaging       Date:  2007-09       Impact factor: 10.048

8.  REVIEW - a reference data set for retinal vessel profiles.

Authors:  Bashir Al-Diri; Andrew Hunter; David Steel; Maged Habib; Taghread Hudaib; Simon Berry
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2008

Review 9.  Retinopathy of prematurity: the life of a lifetime disease.

Authors:  William Tasman; Arnall Patz; J Arch McNamara; Richard S Kaiser; Michael T Trese; Bradley T Smith
Journal:  Am J Ophthalmol       Date:  2006-01       Impact factor: 5.258

10.  Automatic segmentation of seven retinal layers in SDOCT images congruent with expert manual segmentation.

Authors:  Stephanie J Chiu; Xiao T Li; Peter Nicholas; Cynthia A Toth; Joseph A Izatt; Sina Farsiu
Journal:  Opt Express       Date:  2010-08-30       Impact factor: 3.894

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  13 in total

1.  Design of a Novel Low Cost Point of Care Tampon (POCkeT) Colposcope for Use in Resource Limited Settings.

Authors:  Christopher T Lam; Marlee S Krieger; Jennifer E Gallagher; Betsy Asma; Lisa C Muasher; John W Schmitt; Nimmi Ramanujam
Journal:  PLoS One       Date:  2015-09-02       Impact factor: 3.240

2.  Dark field optical imaging reveals vascular changes in an inducible hamster cheek pouch model during carcinogenesis.

Authors:  Fangyao Hu; Robert Morhard; Helen A Murphy; Caigang Zhu; Nimmi Ramanujam
Journal:  Biomed Opt Express       Date:  2016-08-05       Impact factor: 3.732

3.  Retinal Artery-Vein Classification via Topology Estimation.

Authors:  Rolando Estrada; Michael J Allingham; Priyatham S Mettu; Scott W Cousins; Carlo Tomasi; Sina Farsiu
Journal:  IEEE Trans Med Imaging       Date:  2015-06-10       Impact factor: 10.048

4.  Fully automatic segmentation of fluorescein leakage in subjects with diabetic macular edema.

Authors:  Hossein Rabbani; Michael J Allingham; Priyatham S Mettu; Scott W Cousins; Sina Farsiu
Journal:  Invest Ophthalmol Vis Sci       Date:  2015-01-29       Impact factor: 4.799

5.  Tree Topology Estimation.

Authors:  Rolando Estrada; Carlo Tomasi; Scott C Schmidler; Sina Farsiu
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2015-08       Impact factor: 6.226

6.  Real-time, computer-assisted quantification of plus disease in retinopathy of prematurity at the bedside.

Authors:  Michelle T Cabrera; Sharon F Freedman; Mary Elizabeth Hartnett; Sandra S Stinnett; Bei Bei Chen; David K Wallace
Journal:  Ophthalmic Surg Lasers Imaging Retina       Date:  2014 Nov-Dec       Impact factor: 1.300

7.  Open-source, machine and deep learning-based automated algorithm for gestational age estimation through smartphone lens imaging.

Authors:  Arjun D Desai; Chunlei Peng; Leyuan Fang; Dibyendu Mukherjee; Andrew Yeung; Stephanie J Jaffe; Jennifer B Griffin; Sina Farsiu
Journal:  Biomed Opt Express       Date:  2018-11-07       Impact factor: 3.732

8.  Automatic segmentation of up to ten layer boundaries in SD-OCT images of the mouse retina with and without missing layers due to pathology.

Authors:  Pratul P Srinivasan; Stephanie J Heflin; Joseph A Izatt; Vadim Y Arshavsky; Sina Farsiu
Journal:  Biomed Opt Express       Date:  2014-01-07       Impact factor: 3.732

9.  Distinct Angiogenic Changes during Carcinogenesis Defined by Novel Label-Free Dark-Field Imaging in a Hamster Cheek Pouch Model.

Authors:  Fangyao Hu; Hannah Martin; Amy Martinez; Jeffrey Everitt; Alaattin Erkanli; Walter T Lee; Mark Dewhirst; Nimmi Ramanujam
Journal:  Cancer Res       Date:  2017-10-11       Impact factor: 12.701

10.  A dynamic data-driven framework for biological data using 2D barcodes.

Authors:  Hui Li; Chunmei Liu
Journal:  Comput Math Methods Med       Date:  2012-12-09       Impact factor: 2.238

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