Literature DB >> 22311648

Available methods for assembling expression cassettes for synthetic biology.

Tianwen Wang1, Xingyuan Ma, Hu Zhu, Aitao Li, Guocheng Du, Jian Chen.   

Abstract

Studies in the structural biology of the multicomponent protein complex, metabolic engineering, and synthetic biology frequently rely on the efficient over-expression of these subunits or enzymes in the same cell. As a first step, constructing the multiple expression cassettes will be a complicated and time-consuming job if the classic and conventional digestion and ligation based cloning method is used. Some more efficient methods have been developed, including (1) the employment of a multiple compatible plasmid expression system, (2) the rare-cutter-based design of vectors, (3) in vitro recombination (sequence and ligation independent cloning, the isothermally enzymatic assembly of DNA molecules in a single reaction), and (4) in vivo recombination using recombination-efficient yeast (in vivo assembly of overlapping fragments, reiterative recombination for the chromosome integration of foreign expression cassettes). In this review, we systematically introduce these available methods.

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Year:  2012        PMID: 22311648     DOI: 10.1007/s00253-012-3920-8

Source DB:  PubMed          Journal:  Appl Microbiol Biotechnol        ISSN: 0175-7598            Impact factor:   4.813


  10 in total

1.  inPOSE: A Flexible Toolbox for Chromosomal Cloning and Amplification of Bacterial Transgenes.

Authors:  Ranti Dev Shukla; Ágnes Zvara; Ákos Avramucz; Alona Yu Biketova; Akos Nyerges; László G Puskás; Tamás Fehér
Journal:  Microorganisms       Date:  2022-01-21

2.  LncRNA RUS shapes the gene expression program towards neurogenesis.

Authors:  Marius F Schneider; Veronika Müller; Stephan A Müller; Stefan F Lichtenthaler; Peter B Becker; Johanna C Scheuermann
Journal:  Life Sci Alliance       Date:  2022-06-10

3.  Ligation-independent cloning and self-cleaving intein as a tool for high-throughput protein purification.

Authors:  Tiana D Warren; Michael J Coolbaugh; David W Wood
Journal:  Protein Expr Purif       Date:  2013-08-19       Impact factor: 1.650

4.  Assembly of evolved ligninolytic genes in Saccharomyces cerevisiae.

Authors:  David Gonzalez-Perez; Miguel Alcalde
Journal:  Bioengineered       Date:  2014-05-15       Impact factor: 3.269

5.  RapGene: a fast and accurate strategy for synthetic gene assembly in Escherichia coli.

Authors:  Massimiliano Zampini; Pauline Rees Stevens; Justin A Pachebat; Alison Kingston-Smith; Luis A J Mur; Finbarr Hayes
Journal:  Sci Rep       Date:  2015-06-11       Impact factor: 4.379

6.  Mutagenic Organized Recombination Process by Homologous IN vivo Grouping (MORPHING) for directed enzyme evolution.

Authors:  David Gonzalez-Perez; Patricia Molina-Espeja; Eva Garcia-Ruiz; Miguel Alcalde
Journal:  PLoS One       Date:  2014-03-10       Impact factor: 3.240

7.  A novel approach to the generation of seamless constructs for plant transformation.

Authors:  Remy Kronbak; Christina Rønn Ingvardsen; Claus Krogh Madsen; Per Langkjær Gregersen
Journal:  Plant Methods       Date:  2014-05-10       Impact factor: 4.993

8.  A standard vector for the chromosomal integration and characterization of BioBrick™ parts in Escherichia coli.

Authors:  Susanna Zucca; Lorenzo Pasotti; Nicolò Politi; Maria Gabriella Cusella De Angelis; Paolo Magni
Journal:  J Biol Eng       Date:  2013-05-10       Impact factor: 4.355

9.  Directional cloning of DNA fragments using deoxyinosine-containing oligonucleotides and endonuclease V.

Authors:  Tobias Baumann; Katja M Arndt; Kristian M Müller
Journal:  BMC Biotechnol       Date:  2013-10-04       Impact factor: 2.563

Review 10.  Efflux pumps and antimicrobial resistance: Paradoxical components in systems genomics.

Authors:  Ritika Kabra; Nutan Chauhan; Anurag Kumar; Prajakta Ingale; Shailza Singh
Journal:  Prog Biophys Mol Biol       Date:  2018-07-18       Impact factor: 3.667

  10 in total

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