Literature DB >> 22787087

SLC45A3-ELK4 chimera in prostate cancer: spotlight on cis-splicing.

Chandan Kumar-Sinha1, Shanker Kalyana-Sundaram, Arul M Chinnaiyan.   

Abstract

Using a series of detailed experiments, Zhang and colleagues establish that the prostate cancer RNA chimera SLC45A3-ELK4 is generated by cis-splicing between the 2 adjacent genes and does not involve DNA rearrangements or trans-splicing. The chimera expression is induced by androgen treatment likely by overcoming the read-through block imposed by the intergenic CCCTC insulators bound by CCCTC-binding factor repressor protein. The chimeric transcript, but not wild-type ELK4, is shown to augment prostate cancer cell proliferation.

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Year:  2012        PMID: 22787087      PMCID: PMC3597435          DOI: 10.1158/2159-8290.CD-12-0212

Source DB:  PubMed          Journal:  Cancer Discov        ISSN: 2159-8274            Impact factor:   39.397


  20 in total

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Authors:  J D Rowley
Journal:  Nat Rev Cancer       Date:  2001-12       Impact factor: 60.716

Review 2.  Chromosomal aberrations in solid tumors.

Authors:  Arul M Chinnaiyan; Nallasivam Palanisamy
Journal:  Prog Mol Biol Transl Sci       Date:  2010       Impact factor: 3.622

3.  Distinct classes of chromosomal rearrangements create oncogenic ETS gene fusions in prostate cancer.

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Journal:  Nature       Date:  2007-08-02       Impact factor: 49.962

4.  High-resolution profiling of histone methylations in the human genome.

Authors:  Artem Barski; Suresh Cuddapah; Kairong Cui; Tae-Young Roh; Dustin E Schones; Zhibin Wang; Gang Wei; Iouri Chepelev; Keji Zhao
Journal:  Cell       Date:  2007-05-18       Impact factor: 41.582

5.  CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing.

Authors:  Sanjeev Shukla; Ersen Kavak; Melissa Gregory; Masahiko Imashimizu; Bojan Shutinoski; Mikhail Kashlev; Philipp Oberdoerffer; Rickard Sandberg; Shalini Oberdoerffer
Journal:  Nature       Date:  2011-11-03       Impact factor: 49.962

Review 6.  Chromosomal translocations in human cancer.

Authors:  T H Rabbitts
Journal:  Nature       Date:  1994-11-10       Impact factor: 49.962

7.  SLC45A3-ELK4 is a novel and frequent erythroblast transformation-specific fusion transcript in prostate cancer.

Authors:  David S Rickman; Dorothee Pflueger; Benjamin Moss; Vanessa E VanDoren; Chen X Chen; Alexandre de la Taille; Rainer Kuefer; Ashutosh K Tewari; Sunita R Setlur; Francesca Demichelis; Mark A Rubin
Journal:  Cancer Res       Date:  2009-03-17       Impact factor: 12.701

8.  A neoplastic gene fusion mimics trans-splicing of RNAs in normal human cells.

Authors:  Hui Li; Jinglan Wang; Gil Mor; Jeffrey Sklar
Journal:  Science       Date:  2008-09-05       Impact factor: 47.728

9.  Deep RNA sequencing analysis of readthrough gene fusions in human prostate adenocarcinoma and reference samples.

Authors:  Serban Nacu; Wenlin Yuan; Zhengyan Kan; Deepali Bhatt; Celina Sanchez Rivers; Jeremy Stinson; Brock A Peters; Zora Modrusan; Kenneth Jung; Somasekar Seshagiri; Thomas D Wu
Journal:  BMC Med Genomics       Date:  2011-01-24       Impact factor: 3.063

10.  Transcriptome sequencing to detect gene fusions in cancer.

Authors:  Christopher A Maher; Chandan Kumar-Sinha; Xuhong Cao; Shanker Kalyana-Sundaram; Bo Han; Xiaojun Jing; Lee Sam; Terrence Barrette; Nallasivam Palanisamy; Arul M Chinnaiyan
Journal:  Nature       Date:  2009-01-11       Impact factor: 49.962

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  23 in total

1.  Transcription of lncRNA ACoS-AS1 is essential to trans-splicing between SlPsy1 and ACoS-AS1 that causes yellow fruit in tomato.

Authors:  Yao Xiao; Baoshan Kang; Meng Li; Liangjun Xiao; Han Xiao; Huolin Shen; Wencai Yang
Journal:  RNA Biol       Date:  2020-02-02       Impact factor: 4.652

2.  Investigation of fusion gene expression in HCT116 cells.

Authors:  Yanmei Zhang; Juan Ren; Mengdie Fang; Xiaoju Wang
Journal:  Oncol Lett       Date:  2017-09-25       Impact factor: 2.967

3.  Recurrent cis-SAGe chimeric RNA, D2HGDH-GAL3ST2, in prostate cancer.

Authors:  Fujun Qin; Zhenguo Song; Maxwell Chang; Yansu Song; Henry Frierson; Hui Li
Journal:  Cancer Lett       Date:  2016-06-17       Impact factor: 8.679

4.  Ampullary Cancers Harbor ELF3 Tumor Suppressor Gene Mutations and Exhibit Frequent WNT Dysregulation.

Authors:  Marie-Claude Gingras; Kyle R Covington; David K Chang; Lawrence A Donehower; Anthony J Gill; Michael M Ittmann; Chad J Creighton; Amber L Johns; Eve Shinbrot; Ninad Dewal; William E Fisher; Christian Pilarsky; Robert Grützmann; Michael J Overman; Nigel B Jamieson; George Van Buren; Jennifer Drummond; Kimberly Walker; Oliver A Hampton; Liu Xi; Donna M Muzny; Harsha Doddapaneni; Sandra L Lee; Michelle Bellair; Jianhong Hu; Yi Han; Huyen H Dinh; Mike Dahdouli; Jaswinder S Samra; Peter Bailey; Nicola Waddell; John V Pearson; Ivon Harliwong; Huamin Wang; Daniela Aust; Karin A Oien; Ralph H Hruban; Sally E Hodges; Amy McElhany; Charupong Saengboonmee; Fraser R Duthie; Sean M Grimmond; Andrew V Biankin; David A Wheeler; Richard A Gibbs
Journal:  Cell Rep       Date:  2016-01-21       Impact factor: 9.423

Review 5.  Interstitial Deletions Generating Fusion Genes.

Authors:  Ioannis Panagopoulos; Sverre Heim
Journal:  Cancer Genomics Proteomics       Date:  2021 May-Jun       Impact factor: 4.069

6.  Intron retention and transcript chimerism conserved across mammals: Ly6g5b and Csnk2b-Ly6g5b as examples.

Authors:  Francisco Hernández-Torres; Alberto Rastrojo; Begoña Aguado
Journal:  BMC Genomics       Date:  2013-03-22       Impact factor: 3.969

Review 7.  Hypothesis: Artifacts, Including Spurious Chimeric RNAs with a Short Homologous Sequence, Caused by Consecutive Reverse Transcriptions and Endogenous Random Primers.

Authors:  Zhiyu Peng; Chengfu Yuan; Lucas Zellmer; Siqi Liu; Ningzhi Xu; D Joshua Liao
Journal:  J Cancer       Date:  2015-05-01       Impact factor: 4.207

8.  Discovery of CTCF-sensitive Cis-spliced fusion RNAs between adjacent genes in human prostate cells.

Authors:  Fujun Qin; Zhenguo Song; Mihaela Babiceanu; Yansu Song; Loryn Facemire; Ritambhara Singh; Mazhar Adli; Hui Li
Journal:  PLoS Genet       Date:  2015-02-06       Impact factor: 5.917

9.  DHH-RHEBL1 fusion transcript: a novel recurrent feature in the new landscape of pediatric CBFA2T3-GLIS2-positive acute myeloid leukemia.

Authors:  Riccardo Masetti; Marco Togni; Annalisa Astolfi; Martina Pigazzi; Elena Manara; Valentina Indio; Carmelo Rizzari; Sergio Rutella; Giuseppe Basso; Andrea Pession; Franco Locatelli
Journal:  Oncotarget       Date:  2013-10

10.  The relationship between chimeric RNAs and gene fusions: Potential implications of reciprocity in cancer.

Authors:  Justin Elfman; Lam-Phong Pham; Hui Li
Journal:  J Genet Genomics       Date:  2020-06-14       Impact factor: 5.723

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