Literature DB >> 22309848

Construction of synthetic regulatory networks in yeast.

Benjamin A Blount1, Tim Weenink, Tom Ellis.   

Abstract

Yeast species such as Saccharomyces cerevisiae have been exploited by humans for millennia and so it is therefore unsurprising that they are attractive cells to re-engineer for industrial use. Despite many beneficial traits yeast has for synthetic biology, it currently lags behind Escherichia coli in the number of synthetic networks that have been described. While the eukaryotic nature of yeast means that its regulation is not as simple to predict as it is for E. coli, once initial considerations have been made yeast is pleasingly tractable. In this review we provide a loose guide for constructing and implementing synthetic regulatory networks in S. cerevisiae using examples from previous research to highlight available resources, specific considerations and potential future advances.
Copyright © 2012 Federation of European Biochemical Societies. Published by Elsevier B.V. All rights reserved.

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Year:  2012        PMID: 22309848     DOI: 10.1016/j.febslet.2012.01.053

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  14 in total

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2.  Design-driven, multi-use research agendas to enable applied synthetic biology for global health.

Authors:  James M Carothers
Journal:  Syst Synth Biol       Date:  2013-07-20

3.  Modelling co-translational dimerization for programmable nonlinearity in synthetic biology.

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Review 4.  Signal transduction: From the atomic age to the post-genomic era.

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Journal:  Cold Spring Harb Perspect Biol       Date:  2014-10-30       Impact factor: 10.005

5.  Engineering a Model Cell for Rational Tuning of GPCR Signaling.

Authors:  William M Shaw; Hitoshi Yamauchi; Jack Mead; Glen-Oliver F Gowers; David J Bell; David Öling; Niklas Larsson; Mark Wigglesworth; Graham Ladds; Tom Ellis
Journal:  Cell       Date:  2019-04-04       Impact factor: 41.582

6.  Characterization of plasmid burden and copy number in Saccharomyces cerevisiae for optimization of metabolic engineering applications.

Authors:  Ashty S Karim; Kathleen A Curran; Hal S Alper
Journal:  FEMS Yeast Res       Date:  2012-11-20       Impact factor: 2.796

7.  In silico design and in vivo implementation of yeast gene Boolean gates.

Authors:  Mario A Marchisio
Journal:  J Biol Eng       Date:  2014-02-02       Impact factor: 4.355

8.  Genetic circuit design automation for yeast.

Authors:  Ye Chen; Shuyi Zhang; Eric M Young; Timothy S Jones; Douglas Densmore; Christopher A Voigt
Journal:  Nat Microbiol       Date:  2020-08-03       Impact factor: 17.745

9.  Modular, rule-based modeling for the design of eukaryotic synthetic gene circuits.

Authors:  Mario Andrea Marchisio; Moreno Colaiacovo; Ellis Whitehead; Jörg Stelling
Journal:  BMC Syst Biol       Date:  2013-05-27

10.  Artificial cell-cell communication as an emerging tool in synthetic biology applications.

Authors:  Stefan Hennig; Gerhard Rödel; Kai Ostermann
Journal:  J Biol Eng       Date:  2015-08-12       Impact factor: 4.355

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