Literature DB >> 22308396

Subcellular calcium dynamics in a whole-cell model of an atrial myocyte.

Rüdiger Thul1, Stephen Coombes, H Llewelyn Roderick, Martin D Bootman.   

Abstract

In this study, we present an innovative mathematical modeling approach that allows detailed characterization of Ca(2+) movement within the three-dimensional volume of an atrial myocyte. Essential aspects of the model are the geometrically realistic representation of Ca(2+) release sites and physiological Ca(2+) flux parameters, coupled with a computationally inexpensive framework. By translating nonlinear Ca(2+) excitability into threshold dynamics, we avoid the computationally demanding time stepping of the partial differential equations that are often used to model Ca(2+) transport. Our approach successfully reproduces key features of atrial myocyte Ca(2+) signaling observed using confocal imaging. In particular, the model displays the centripetal Ca(2+) waves that occur within atrial myocytes during excitation-contraction coupling, and the effect of positive inotropic stimulation on the spatial profile of the Ca(2+) signals. Beyond this validation of the model, our simulation reveals unexpected observations about the spread of Ca(2+) within an atrial myocyte. In particular, the model describes the movement of Ca(2+) between ryanodine receptor clusters within a specific z disk of an atrial myocyte. Furthermore, we demonstrate that altering the strength of Ca(2+) release, ryanodine receptor refractoriness, the magnitude of initiating stimulus, or the introduction of stochastic Ca(2+) channel activity can cause the nucleation of proarrhythmic traveling Ca(2+) waves. The model provides clinically relevant insights into the initiation and propagation of subcellular Ca(2+) signals that are currently beyond the scope of imaging technology.

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Year:  2012        PMID: 22308396      PMCID: PMC3277557          DOI: 10.1073/pnas.1115855109

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  18 in total

1.  Predetermined recruitment of calcium release sites underlies excitation-contraction coupling in rat atrial myocytes.

Authors:  L Mackenzie; M D Bootman; M J Berridge; P Lipp
Journal:  J Physiol       Date:  2001-02-01       Impact factor: 5.182

2.  Ca2+ current-gated focal and local Ca2+ release in rat atrial myocytes: evidence from rapid 2-D confocal imaging.

Authors:  Sun-Hee Woo; Lars Cleemann; Martin Morad
Journal:  J Physiol       Date:  2002-09-01       Impact factor: 5.182

3.  Saltatory propagation of Ca2+ waves by Ca2+ sparks.

Authors:  J Keizer; G D Smith; S Ponce-Dawson; J E Pearson
Journal:  Biophys J       Date:  1998-08       Impact factor: 4.033

4.  Ryanodine receptors: waking up from refractoriness.

Authors:  Ernst Niggli
Journal:  Cardiovasc Res       Date:  2011-07-08       Impact factor: 10.787

5.  Human atrial action potential and Ca2+ model: sinus rhythm and chronic atrial fibrillation.

Authors:  Eleonora Grandi; Sandeep V Pandit; Niels Voigt; Antony J Workman; Dobromir Dobrev; José Jalife; Donald M Bers
Journal:  Circ Res       Date:  2011-09-15       Impact factor: 17.367

6.  The role of inositol 1,4,5-trisphosphate receptors in Ca(2+) signalling and the generation of arrhythmias in rat atrial myocytes.

Authors:  Lauren Mackenzie; Martin D Bootman; Mika Laine; Michael J Berridge; Jan Thuring; Andrew Holmes; Wen-Hong Li; Peter Lipp
Journal:  J Physiol       Date:  2002-06-01       Impact factor: 5.182

7.  Temporal changes in atrial EC-coupling during prolonged stimulation with endothelin-1.

Authors:  Martin D Bootman; Dagmar Harzheim; Ioannis Smyrnias; Stuart J Conway; H Llewelyn Roderick
Journal:  Cell Calcium       Date:  2007-06-14       Impact factor: 6.817

8.  Sparks and waves in a stochastic fire-diffuse-fire model of Ca2+ release.

Authors:  S Coombes; Y Timofeeva
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2003-08-25

9.  Impact of sarcoplasmic reticulum calcium release on calcium dynamics and action potential morphology in human atrial myocytes: a computational study.

Authors:  Jussi T Koivumäki; Topi Korhonen; Pasi Tavi
Journal:  PLoS Comput Biol       Date:  2011-01-27       Impact factor: 4.475

10.  Immunolocalization of sarcolemmal dihydropyridine receptor and sarcoplasmic reticular triadin and ryanodine receptor in rabbit ventricle and atrium.

Authors:  S L Carl; K Felix; A H Caswell; N R Brandt; W J Ball; P L Vaghy; G Meissner; D G Ferguson
Journal:  J Cell Biol       Date:  1995-05       Impact factor: 10.539

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  28 in total

1.  What is a Ca(2+) wave? Is it like an Electrical Wave?

Authors:  Penelope A Boyden; Wen Dun; Bruno D Stuyvers
Journal:  Arrhythm Electrophysiol Rev       Date:  2015-05-30

Review 2.  How cells process information: quantification of spatiotemporal signaling dynamics.

Authors:  Ambhighainath Ganesan; Jin Zhang
Journal:  Protein Sci       Date:  2012-06-05       Impact factor: 6.725

Review 3.  Mathematical approaches to understanding and imaging atrial fibrillation: significance for mechanisms and management.

Authors:  Natalia A Trayanova
Journal:  Circ Res       Date:  2014-04-25       Impact factor: 17.367

4.  Mechanism for Triggered Waves in Atrial Myocytes.

Authors:  Yohannes Shiferaw; Gary L Aistrup; J Andrew Wasserstrom
Journal:  Biophys J       Date:  2017-08-08       Impact factor: 4.033

Review 5.  Mechano-chemo-transduction in cardiac myocytes.

Authors:  Ye Chen-Izu; Leighton T Izu
Journal:  J Physiol       Date:  2017-03-10       Impact factor: 5.182

6.  Enhanced Cytosolic Ca2+ Activation Underlies a Common Defect of Central Domain Cardiac Ryanodine Receptor Mutations Linked to Arrhythmias.

Authors:  Zhichao Xiao; Wenting Guo; Bo Sun; Donald J Hunt; Jinhong Wei; Yingjie Liu; Yundi Wang; Ruiwu Wang; Peter P Jones; Thomas G Back; S R Wayne Chen
Journal:  J Biol Chem       Date:  2016-10-12       Impact factor: 5.157

Review 7.  Second Messengers.

Authors:  Alexandra C Newton; Martin D Bootman; John D Scott
Journal:  Cold Spring Harb Perspect Biol       Date:  2016-08-01       Impact factor: 10.005

8.  Afterdepolarizations and abnormal calcium handling in atrial myocytes with modulated SERCA uptake: a sensitivity analysis of calcium handling channels.

Authors:  Andy C Y Lo; Jieyun Bai; Patrick A Gladding; Vadim V Fedorov; Jichao Zhao
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2020-05-25       Impact factor: 4.226

Review 9.  Ca²⁺ waves in the heart.

Authors:  Leighton T Izu; Yuanfang Xie; Daisuke Sato; Tamás Bányász; Ye Chen-Izu
Journal:  J Mol Cell Cardiol       Date:  2012-12-05       Impact factor: 5.000

10.  Recruitment of the intracellular Ca2+ by ultrashort electric stimuli: the impact of pulse duration.

Authors:  Iurii Semenov; Shu Xiao; Olga N Pakhomova; Andrei G Pakhomov
Journal:  Cell Calcium       Date:  2013-06-15       Impact factor: 6.817

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