Literature DB >> 14525014

Sparks and waves in a stochastic fire-diffuse-fire model of Ca2+ release.

S Coombes1, Y Timofeeva.   

Abstract

Calcium ions are an important second messenger in living cells. Indeed, calcium signals in the form of waves have been the subject of much recent experimental interest. It is now well established that these waves are composed of elementary stochastic release events (calcium puffs or sparks) from spatially localized calcium stores. Here we develop a computationally inexpensive model of calcium release, based upon a stochastic generalization of the fire-diffuse-fire threshold model. Our model retains the discrete nature of calcium stores, but also incorporates a notion of release probability via the introduction of threshold noise. Numerical simulations of the model illustrate that stochastic calcium release leads to the spontaneous production of calcium sparks that may merge to form saltatory waves. In the parameter regime where deterministic waves exist, it is possible to identify a critical level of noise, defining a nonequilibrium phase transition between propagating and abortive structures. A statistical analysis shows that this transition is the same as for models in the directed percolation universality class. Moreover, in the regime where no initial structure can survive deterministically, threshold noise is shown to generate a form of array enhanced coherence resonance, whereby all calcium stores release periodically and simultaneously.

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Year:  2003        PMID: 14525014     DOI: 10.1103/PhysRevE.68.021915

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  11 in total

1.  How does intracellular Ca2+ oscillate: by chance or by the clock?

Authors:  Alexander Skupin; Helmut Kettenmann; Ulrike Winkler; Maria Wartenberg; Heinrich Sauer; Stephen C Tovey; Colin W Taylor; Martin Falcke
Journal:  Biophys J       Date:  2007-12-07       Impact factor: 4.033

2.  A bidomain threshold model of propagating calcium waves.

Authors:  R Thul; G D Smith; S Coombes
Journal:  J Math Biol       Date:  2007-09-05       Impact factor: 2.259

3.  Calcium waves in a grid of clustered channels with synchronous IP3 binding and unbinding.

Authors:  M Rückl; S Rüdiger
Journal:  Eur Phys J E Soft Matter       Date:  2016-11-17       Impact factor: 1.890

4.  Inositol-1,4,5-trisphosphate induced Ca2+ release and excitation-contraction coupling in atrial myocytes from normal and failing hearts.

Authors:  Felix Hohendanner; Stefanie Walther; Joshua T Maxwell; Sarah Kettlewell; Sawsan Awad; Godfrey L Smith; Vassyl A Lonchyna; Lothar A Blatter
Journal:  J Physiol       Date:  2014-12-22       Impact factor: 5.182

5.  Subcellular calcium dynamics in a whole-cell model of an atrial myocyte.

Authors:  Rüdiger Thul; Stephen Coombes; H Llewelyn Roderick; Martin D Bootman
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-23       Impact factor: 11.205

6.  Ryanodine receptor gating controls generation of diastolic calcium waves in cardiac myocytes.

Authors:  Pavol Petrovič; Ivan Valent; Elena Cocherová; Jana Pavelková; Alexandra Zahradníková
Journal:  J Gen Physiol       Date:  2015-06       Impact factor: 4.086

7.  Basis for a neuronal version of Grover's quantum algorithm.

Authors:  Kevin B Clark
Journal:  Front Mol Neurosci       Date:  2014-04-17       Impact factor: 5.639

8.  Abortive and propagating intracellular calcium waves: analysis from a hybrid model.

Authors:  Nara Guisoni; Paola Ferrero; Carla Layana; Luis Diambra
Journal:  PLoS One       Date:  2015-01-20       Impact factor: 3.240

9.  Intracellular calcium signals display an avalanche-like behavior over multiple lengthscales.

Authors:  Lucía Lopez; Estefanía Piegari; Lorena Sigaut; Silvina Ponce Dawson
Journal:  Front Physiol       Date:  2012-09-03       Impact factor: 4.566

10.  Neuromorphic atomic switch networks.

Authors:  Audrius V Avizienis; Henry O Sillin; Cristina Martin-Olmos; Hsien Hang Shieh; Masakazu Aono; Adam Z Stieg; James K Gimzewski
Journal:  PLoS One       Date:  2012-08-06       Impact factor: 3.240

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