Literature DB >> 22307785

Analysis of the genetic diversity of physic nut, Jatropha curcas L. accessions using RAPD markers.

M Y Rafii1, M Shabanimofrad, M W Puteri Edaroyati, M A Latif.   

Abstract

A sum of 48 accessions of physic nut, Jatropha curcas L. were analyzed to determine the genetic diversity and association between geographical origin using RAPD-PCR markers. Eight primers generated a total of 92 fragments with an average of 11.5 amplicons per primer. Polymorphism percentages of J. curcas accessions for Selangor, Kelantan, and Terengganu states were 80.4, 50.0, and 58.7%, respectively, with an average of 63.04%. Jaccard's genetic similarity co-efficient indicated the high level of genetic variation among the accessions which ranged between 0.06 and 0.81. According to UPGMA dendrogram, 48 J. curcas accessions were grouped into four major clusters at coefficient level 0.3 and accessions from same and near states or regions were found to be grouped together according to their geographical origin. Coefficient of genetic differentiation (G(st)) value of J. curcas revealed that it is an outcrossing species.

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Year:  2012        PMID： 22307785     DOI： 10.1007/s11033-012-1478-2

Source DB:  PubMed          Journal:  Mol Biol Rep        ISSN： 0301-4851            Impact factor:   2.316


  6 in total

1.  Microsatellite and minisatellite markers based DNA fingerprinting and genetic diversity of blast and ufra resistant genotypes.

Authors:  M A Latif; Mohd Rafii Yusop; M Motiur Rahman; M R Bashar Talukdar
Journal:  C R Biol       Date:  2011-03-27       Impact factor: 1.583

2.  Genetic variability of oil palm parental genotypes and performance of its' progenies as revealed by molecular markers and quantitative traits.

Authors:  Norziha Abdullah; Mohd Rafii Yusop; Maizura Ithnin; Ghizan Saleh; M A Latif
Journal:  C R Biol       Date:  2011-03-26       Impact factor: 1.583

3.  AFLP-based molecular characterization of an elite germplasm collection of Jatropha curcas L., a biofuel plant.

Authors:  Leela Tatikonda; Suhas P Wani; Seetha Kannan; Naresh Beerelli; Thakur K Sreedevi; David A Hoisington; Prathibha Devi; Rajeev K Varshney
Journal:  Plant Sci       Date:  2009-01-20       Impact factor: 4.729

Review 4.  Potential of Jatropha curcas as a source of renewable oil and animal feed.

Authors:  Andrew J King; Wei He; Jesús A Cuevas; Mark Freudenberger; Danièle Ramiaramanana; Ian A Graham
Journal:  J Exp Bot       Date:  2009-02-13       Impact factor: 6.992

5.  Comparative study of interspecific genetic divergence and phylogenic analysis of genus Jatropha by RAPD and AFLP: genetic divergence and phylogenic analysis of genus Jatropha.

Authors:  D V N Sudheer Pamidiamarri; Nirali Pandya; Muppala P Reddy; T Radhakrishnan
Journal:  Mol Biol Rep       Date:  2008-04-30       Impact factor: 2.316

6.  Molecular characterization and identification of markers for toxic and non-toxic varieties of Jatropha curcas L. using RAPD, AFLP and SSR markers.

Authors:  D V N Sudheer Pamidimarri; Sweta Singh; Shaik G Mastan; Jalpa Patel; Muppala P Reddy
Journal:  Mol Biol Rep       Date:  2008-07-19       Impact factor: 2.316
  6 in total
  5 in total

1.  Biomolecular characterization of diazotrophs isolated from the tropical soil in Malaysia.

Authors:  Umme Aminun Naher; Radziah Othman; Mohammad Abdul Latif; Qurban Ali Panhwar; Puteri Aminatulhawa Megat Amaddin; Zulkifli H Shamsuddin
Journal:  Int J Mol Sci       Date:  2013-08-30       Impact factor: 5.923

2.  Enriching Genomic Resources and Marker Development from Transcript Sequences of Jatropha curcas for Microgravity Studies.

Authors:  Wenlan Tian; Dev Paudel; Wagner Vendrame; Jianping Wang
Journal:  Int J Genomics       Date:  2017-01-05       Impact factor: 2.326

3.  Genetic dissection of new genotypes of drumstick tree (Moringa oleifera Lam.) using random amplified polymorphic DNA marker.

Authors:  Shamsuddeen Rufai; M M Hanafi; M Y Rafii; S Ahmad; I W Arolu; Jannatul Ferdous
Journal:  Biomed Res Int       Date:  2013-05-21       Impact factor: 3.411

4.  Biochemical and anatomical changes and yield reduction in rice (Oryza sativa L.) under varied salinity regimes.

Authors:  M A Hakim; Abdul Shukor Juraimi; M M Hanafi; Mohd Razi Ismail; Ahmad Selamat; M Y Rafii; M A Latif
Journal:  Biomed Res Int       Date:  2014-01-22       Impact factor: 3.411

5.  Morphological characterization and assessment of genetic variability, character association, and divergence in soybean mutants.

Authors:  M A Malek; Mohd Y Rafii; Most Shahida Sharmin Afroz; Ujjal Kumar Nath; M Monjurul Alam Mondal
Journal:  ScientificWorldJournal       Date:  2014-08-12
  5 in total

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