Literature DB >> 22306650

Common variants at 11p13 are associated with susceptibility to tuberculosis.

Thorsten Thye1, Ellis Owusu-Dabo, Fredrik O Vannberg, Reinout van Crevel, James Curtis, Edhyana Sahiratmadja, Yanina Balabanova, Christa Ehmen, Birgit Muntau, Gerd Ruge, Jürgen Sievertsen, John Gyapong, Vladyslav Nikolayevskyy, Philip C Hill, Giorgio Sirugo, Francis Drobniewski, Esther van de Vosse, Melanie Newport, Bachti Alisjahbana, Sergey Nejentsev, Tom H M Ottenhoff, Adrian V S Hill, Rolf D Horstmann, Christian G Meyer.   

Abstract

After imputation of data from the 1000 Genomes Project into a genome-wide dataset of Ghanaian individuals with tuberculosis and controls, we identified a resistance locus on chromosome 11p13 downstream of the WT1 gene (encoding Wilms tumor 1). The strongest signal was obtained at the rs2057178 SNP (P = 2.63 × 10(-9)). Replication in Gambian, Indonesian and Russian tuberculosis case-control study cohorts increased the significance level for the association with this SNP to P = 2.57 × 10(-11).

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Year:  2012        PMID: 22306650      PMCID: PMC3427019          DOI: 10.1038/ng.1080

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  11 in total

Review 1.  Immunology of tuberculosis.

Authors:  J L Flynn; J Chan
Journal:  Annu Rev Immunol       Date:  2001       Impact factor: 28.527

2.  Wilms' tumor protein Wt1 regulates the Interleukin-10 (IL-10) gene.

Authors:  Lina K Sciesielski; Karin M Kirschner; Holger Scholz; Anja Bondke Persson
Journal:  FEBS Lett       Date:  2010-10-26       Impact factor: 4.124

3.  MaCH: using sequence and genotype data to estimate haplotypes and unobserved genotypes.

Authors:  Yun Li; Cristen J Willer; Jun Ding; Paul Scheet; Gonçalo R Abecasis
Journal:  Genet Epidemiol       Date:  2010-12       Impact factor: 2.135

Review 4.  Human genetic susceptibility to intracellular pathogens.

Authors:  Fredrik O Vannberg; Stephen J Chapman; Adrian V S Hill
Journal:  Immunol Rev       Date:  2011-03       Impact factor: 12.988

5.  The Wilms' tumor gene product (WT1) modulates the response to 1,25-dihydroxyvitamin D3 by induction of the vitamin D receptor.

Authors:  U Maurer; F Jehan; C Englert; G Hubinger; E Weidmann; H F DeLuca; L Bergmann
Journal:  J Biol Chem       Date:  2000-10-24       Impact factor: 5.157

Review 6.  Control of human host immunity to mycobacteria.

Authors:  Tom H M Ottenhoff; Frank A W Verreck; Marieke A Hoeve; Esther van de Vosse
Journal:  Tuberculosis (Edinb)       Date:  2004-12-31       Impact factor: 3.131

Review 7.  Wilms' tumours: about tumour suppressor genes, an oncogene and a chameleon gene.

Authors:  Vicki Huff
Journal:  Nat Rev Cancer       Date:  2011-01-20       Impact factor: 60.716

8.  Autophagy gene variant IRGM -261T contributes to protection from tuberculosis caused by Mycobacterium tuberculosis but not by M. africanum strains.

Authors:  Christopher D Intemann; Thorsten Thye; Stefan Niemann; Edmund N L Browne; Margaret Amanua Chinbuah; Anthony Enimil; John Gyapong; Ivy Osei; Ellis Owusu-Dabo; Susanne Helm; Sabine Rüsch-Gerdes; Rolf D Horstmann; Christian G Meyer
Journal:  PLoS Pathog       Date:  2009-09-11       Impact factor: 6.823

9.  Genotype-imputation accuracy across worldwide human populations.

Authors:  Lucy Huang; Yun Li; Andrew B Singleton; John A Hardy; Gonçalo Abecasis; Noah A Rosenberg; Paul Scheet
Journal:  Am J Hum Genet       Date:  2009-02       Impact factor: 11.025

10.  Genome-wide association analyses identifies a susceptibility locus for tuberculosis on chromosome 18q11.2.

Authors:  Thorsten Thye; Fredrik O Vannberg; Rolf D Horstmann; Adrian V S Hill; Sunny H Wong; Ellis Owusu-Dabo; Ivy Osei; John Gyapong; Giorgio Sirugo; Fatou Sisay-Joof; Anthony Enimil; Margaret A Chinbuah; Sian Floyd; David K Warndorff; Lifted Sichali; Simon Malema; Amelia C Crampin; Bagrey Ngwira; Yik Y Teo; Kerrin Small; Kirk Rockett; Dominic Kwiatkowski; Paul E Fine; Philip C Hill; Melanie Newport; Christian Lienhardt; Richard A Adegbola; Tumani Corrah; Andreas Ziegler; Andrew P Morris; Christian G Meyer
Journal:  Nat Genet       Date:  2010-08-08       Impact factor: 38.330

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  94 in total

Review 1.  Systems immunogenetics of vaccines.

Authors:  Michael Mooney; Shannon McWeeney; Rafick-Pierre Sékaly
Journal:  Semin Immunol       Date:  2013-07-22       Impact factor: 11.130

2.  No significant impact of IFN-γ pathway gene variants on tuberculosis susceptibility in a West African population.

Authors:  Christian G Meyer; Christopher D Intemann; Birgit Förster; Ellis Owusu-Dabo; Andre Franke; Rolf D Horstmann; Thorsten Thye
Journal:  Eur J Hum Genet       Date:  2015-08-05       Impact factor: 4.246

3.  Genome-wide association study of ancestry-specific TB risk in the South African Coloured population.

Authors:  Emile R Chimusa; Noah Zaitlen; Michelle Daya; Marlo Möller; Paul D van Helden; Nicola J Mulder; Alkes L Price; Eileen G Hoal
Journal:  Hum Mol Genet       Date:  2013-09-20       Impact factor: 6.150

Review 4.  Genetics and evolution of tuberculosis pathogenesis: New perspectives and approaches.

Authors:  Michael L McHenry; Scott M Williams; Catherine M Stein
Journal:  Infect Genet Evol       Date:  2020-01-22       Impact factor: 3.342

Review 5.  Tuberculosis in Children.

Authors:  Tania A Thomas
Journal:  Pediatr Clin North Am       Date:  2017-08       Impact factor: 3.278

6.  Association between CD53 genetic polymorphisms and tuberculosis cases.

Authors:  Hyun-Seok Jin; Jang-Eun Cho; Sangjung Park
Journal:  Genes Genomics       Date:  2018-11-30       Impact factor: 1.839

7.  Diversity and inclusion in genomic research: why the uneven progress?

Authors:  Amy R Bentley; Shawneequa Callier; Charles N Rotimi
Journal:  J Community Genet       Date:  2017-07-18

Review 8.  Tuberculosis susceptibility and protection in children.

Authors:  Robindra Basu Roy; Elizabeth Whittaker; James A Seddon; Beate Kampmann
Journal:  Lancet Infect Dis       Date:  2018-10-12       Impact factor: 25.071

9.  Association of polymorphisms in the Chr18q11.2 locus with tuberculosis in Chinese population.

Authors:  Xingyan Wang; Nelson Leung-Sang Tang; Chi Chiu Leung; Kai Man Kam; Wing Wai Yew; Cheuk Ming Tam; Chiu Yeung Chan
Journal:  Hum Genet       Date:  2013-03-03       Impact factor: 4.132

10.  One thousand genomes imputation in the National Cancer Institute Breast and Prostate Cancer Cohort Consortium aggressive prostate cancer genome-wide association study.

Authors:  Mitchell J Machiela; Constance Chen; Liming Liang; W Ryan Diver; Victoria L Stevens; Konstantinos K Tsilidis; Christopher A Haiman; Stephen J Chanock; David J Hunter; Peter Kraft
Journal:  Prostate       Date:  2012-12-19       Impact factor: 4.104

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