Literature DB >> 22305522

Redundancy and rewiring of genetic networks following genome-wide duplication events.

Riet De Smet1, Yves Van de Peer.   

Abstract

Polyploidy or whole-genome duplication is a frequent phenomenon within the plant kingdom and has been associated with the occurrence of evolutionary novelty and increase in biological complexity. Because genome-wide duplication events duplicate whole molecular networks it is of interest to investigate how these networks evolve subsequent to such events. Although genome duplications are generally followed by massive gene loss, at least part of the network is usually retained in duplicate and can rewire to execute novel functions. Alternatively, the network can remain largely redundant and as such confer robustness against mutations. The increasing availability of high-throughput data makes it possible to study evolution following whole genome duplication events at the network level. Here we discuss how the use of 'omics' data in network analysis can provide novel insights on network redundancy and rewiring and conclude with some directions for future research.
Copyright © 2012 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 22305522     DOI: 10.1016/j.pbi.2012.01.003

Source DB:  PubMed          Journal:  Curr Opin Plant Biol        ISSN: 1369-5266            Impact factor:   7.834


  53 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2016-01-14       Impact factor: 11.205

2.  A Robust Methodology for Assessing Differential Homeolog Contributions to the Transcriptomes of Allopolyploids.

Authors:  J Lucas Boatwright; Lauren M McIntyre; Alison M Morse; Sixue Chen; Mi-Jeong Yoo; Jin Koh; Pamela S Soltis; Douglas E Soltis; W Brad Barbazuk
Journal:  Genetics       Date:  2018-09-13       Impact factor: 4.562

3.  Expression Atlas of Selaginella moellendorffii Provides Insights into the Evolution of Vasculature, Secondary Metabolism, and Roots.

Authors:  Camilla Ferrari; Devendra Shivhare; Bjoern Oest Hansen; Asher Pasha; Eddi Esteban; Nicholas J Provart; Friedrich Kragler; Alisdair Fernie; Takayuki Tohge; Marek Mutwil
Journal:  Plant Cell       Date:  2020-01-27       Impact factor: 11.277

4.  The shock of being united and symphiliosis. Another lesson from plants?

Authors:  Yuri Lazebnik
Journal:  Cell Cycle       Date:  2014       Impact factor: 4.534

5.  Evolutionary patterns and coevolutionary consequences of MIRNA genes and microRNA targets triggered by multiple mechanisms of genomic duplications in soybean.

Authors:  Meixia Zhao; Blake C Meyers; Chunmei Cai; Wei Xu; Jianxin Ma
Journal:  Plant Cell       Date:  2015-03-06       Impact factor: 11.277

Review 6.  The evolutionary significance of polyploidy.

Authors:  Yves Van de Peer; Eshchar Mizrachi; Kathleen Marchal
Journal:  Nat Rev Genet       Date:  2017-05-15       Impact factor: 53.242

7.  Evolution of Cis-Regulatory Elements and Regulatory Networks in Duplicated Genes of Arabidopsis.

Authors:  Andrej A Arsovski; Julian Pradinuk; Xu Qiu Guo; Sishuo Wang; Keith L Adams
Journal:  Plant Physiol       Date:  2015-10-16       Impact factor: 8.340

8.  Analysis of bHLH coding genes using gene co-expression network approach.

Authors:  Swati Srivastava; Garima Singh; Noopur Singh; Gaurava Srivastava; Ashok Sharma
Journal:  Mol Biol Rep       Date:  2016-05-13       Impact factor: 2.316

9.  Coordinated Functional Divergence of Genes after Genome Duplication in Arabidopsis thaliana.

Authors:  Riet De Smet; Ehsan Sabaghian; Zhen Li; Yvan Saeys; Yves Van de Peer
Journal:  Plant Cell       Date:  2017-10-25       Impact factor: 11.277

Review 10.  Living Organisms Author Their Read-Write Genomes in Evolution.

Authors:  James A Shapiro
Journal:  Biology (Basel)       Date:  2017-12-06
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