Literature DB >> 22301026

Identification of hepatitis C virus transmission using a next-generation sequencing approach.

Alejandro Escobar-Gutiérrez1, Mauricio Vazquez-Pichardo, Mayra Cruz-Rivera, Pilar Rivera-Osorio, Juan Carlos Carpio-Pedroza, Juan Alberto Ruíz-Pacheco, Karina Ruiz-Tovar, Gilberto Vaughan.   

Abstract

Here, we describe a transmission event of hepatitis C virus (HCV) among injection drug users. Next-generation sequencing (NGS) was used to assess the intrahost viral genetic variation. Deep amplicon sequencing of HCV hypervariable region 1 allowed for a detailed analysis of the structure of the viral population. Establishment of the genetic relatedness between cases was accomplished by phylogenetic analysis. NGS is a powerful tool with applications in molecular epidemiology studies and outbreak investigations.

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Year:  2012        PMID： 22301026      PMCID： PMC3318530          DOI： 10.1128/JCM.00005-12

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  18 in total

Review 1.  Ultra-deep sequencing for the analysis of viral populations.

Authors:  Niko Beerenwinkel; Osvaldo Zagordi
Journal:  Curr Opin Virol       Date:  2011-08-17       Impact factor: 7.090

2.  Recent developments in the MAFFT multiple sequence alignment program.

Authors:  Kazutaka Katoh; Hiroyuki Toh
Journal:  Brief Bioinform       Date:  2008-03-27       Impact factor: 11.622

Review 3.  Global epidemiology of hepatitis B and hepatitis C in people who inject drugs: results of systematic reviews.

Authors:  Paul K Nelson; Bradley M Mathers; Benjamin Cowie; Holly Hagan; Don Des Jarlais; Danielle Horyniak; Louisa Degenhardt
Journal:  Lancet       Date:  2011-07-27       Impact factor: 79.321

4.  Risk factors associated with hepatitis C virus infection in an urban population of the State of Mexico.

Authors:  S Romero-Figueroa; E Ceballos-Salgado; L Santillán-Arreygue; M Miranda-García; M Rubio-Lezama; J J Garduño-García
Journal:  Arch Virol       Date:  2011-10-30       Impact factor: 2.574

5.  Specific detection of naturally occurring hepatitis C virus mutants with resistance to telaprevir and boceprevir (protease inhibitors) among treatment-naïve infected individuals.

Authors:  Salvador Fonseca-Coronado; Alejandro Escobar-Gutiérrez; Karina Ruiz-Tovar; Mayra Yolanda Cruz-Rivera; Pilar Rivera-Osorio; Mauricio Vazquez-Pichardo; Juan Carlos Carpio-Pedroza; Juan Alberto Ruíz-Pacheco; Fernando Cazares; Gilberto Vaughan
Journal:  J Clin Microbiol       Date:  2011-11-23       Impact factor: 5.948

6.  Mathematical modelling of hepatitis C treatment for injecting drug users.

Authors:  Natasha K Martin; Peter Vickerman; Matthew Hickman
Journal:  J Theor Biol       Date:  2011-01-12       Impact factor: 2.691

7.  Prevalence of hepatitis C infection in a population of asymptomatic people in a checkup unit in Mexico city.

Authors:  Nahum Méndez-Sánchez; Guadalupe Ponciano-Rodriguez; Norberto C Chávez-Tapia; Daniel Motola-Kuba; Paloma Almeda-Valdes; Karla Sánchez-Lara; Martha H Ramos; Misael Uribe
Journal:  Dig Dis Sci       Date:  2005-04       Impact factor: 3.199

8.  [Prevalence for seropositivity for HIV, hepatitis B and hepatitis C in blood donors].

Authors:  María Rebeca F Rivera-López; Celia Zavala-Méndez; Alfonso Arenas-Esqueda
Journal:  Gac Med Mex       Date:  2004 Nov-Dec       Impact factor: 0.302

Review 9.  Nonhospital health care-associated hepatitis B and C virus transmission: United States, 1998-2008.

Authors:  Nicola D Thompson; Joseph F Perz; Anne C Moorman; Scott D Holmberg
Journal:  Ann Intern Med       Date:  2009-01-06       Impact factor: 25.391

10.  Hepatitis C virus infection in blood donors from the state of Puebla, Mexico.

Authors:  Francisca Sosa-Jurado; Gerardo Santos-López; Belinda Guzmán-Flores; Julia I Ruiz-Conde; Daniel Meléndez-Mena; Martín T Vargas-Maldonado; Ygnacio Martínez-Laguna; Laura Contreras-Mioni; Verónica Vallejo-Ruiz; Julio Reyes-Leyva
Journal:  Virol J       Date:  2010-01-25       Impact factor: 4.099
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  19 in total

Review 1.  Hepatitis C virus genetic variability and evolution.

Authors:  Natalia Echeverría; Gonzalo Moratorio; Juan Cristina; Pilar Moreno
Journal:  World J Hepatol       Date:  2015-04-28

2.  Societal Implications of the Internet of Pathogens.

Authors:  Alexander L Greninger
Journal:  J Clin Microbiol       Date:  2019-05-24       Impact factor: 5.948

Review 3.  Hepatitis C virus molecular evolution: transmission, disease progression and antiviral therapy.

Authors:  Maria Victoria Preciado; Pamela Valva; Alejandro Escobar-Gutierrez; Paula Rahal; Karina Ruiz-Tovar; Lilian Yamasaki; Carlos Vazquez-Chacon; Armando Martinez-Guarneros; Juan Carlos Carpio-Pedroza; Salvador Fonseca-Coronado; Mayra Cruz-Rivera
Journal:  World J Gastroenterol       Date:  2014-11-21       Impact factor: 5.742

4.  Rapid hepatitis C virus divergence among chronically infected individuals.

Authors:  Mayra Cruz-Rivera; Juan Carlos Carpio-Pedroza; Alejandro Escobar-Gutiérrez; Daniela Lozano; Arely Vergara-Castaneda; Pilar Rivera-Osorio; Armando Martinez-Guarneros; Carlos A Vazquez Chacon; Salvador Fonseca-Coronado; Gilberto Vaughan
Journal:  J Clin Microbiol       Date:  2012-12-05       Impact factor: 5.948

Review 5.  Deep sequencing: becoming a critical tool in clinical virology.

Authors:  Miguel E Quiñones-Mateu; Santiago Avila; Gustavo Reyes-Teran; Miguel A Martinez
Journal:  J Clin Virol       Date:  2014-06-24       Impact factor: 3.168

6.  Vertical transmission of hepatitis C virus: a tale of multiple outcomes.

Authors:  Alejandro Escobar-Gutiérrez; Hugo Soudeyns; Ariane Larouche; Juan Carlos Carpio-Pedroza; Armando Martinez-Guarneros; Carlos A Vazquez-Chacon; Salvador Fonseca-Coronado; Lilian H T Yamasaki; Karina Ruiz-Tovar; Mayra Cruz-Rivera
Journal:  Infect Genet Evol       Date:  2013-10-18       Impact factor: 3.342

7.  Challenges and opportunities in estimating viral genetic diversity from next-generation sequencing data.

Authors:  Niko Beerenwinkel; Huldrych F Günthard; Volker Roth; Karin J Metzner
Journal:  Front Microbiol       Date:  2012-09-11       Impact factor: 5.640

8.  Deep sequencing analysis of viral infection and evolution allows rapid and detailed characterization of viral mutant spectrum.

Authors:  Ofer Isakov; Antonio V Bordería; David Golan; Amir Hamenahem; Gershon Celniker; Liron Yoffe; Hervé Blanc; Marco Vignuzzi; Noam Shomron
Journal:  Bioinformatics       Date:  2015-02-19       Impact factor: 6.937

9.  Ultradeep pyrosequencing of hepatitis C virus hypervariable region 1 in quasispecies analysis.

Authors:  Kamila Caraballo Cortés; Osvaldo Zagordi; Tomasz Laskus; Rafał Płoski; Iwona Bukowska-Ośko; Agnieszka Pawełczyk; Hanna Berak; Marek Radkowski
Journal:  Biomed Res Int       Date:  2013-04-28       Impact factor: 3.411

10.  Feasibility of using 454 pyrosequencing for studying quasispecies of the whole dengue viral genome.

Authors:  Kwanrutai Chin-inmanu; Aroonroong Suttitheptumrong; Duangjai Sangsrakru; Sithichoke Tangphatsornruang; Somvong Tragoonrung; Prida Malasit; Sumalee Tungpradabkul; Prapat Suriyaphol
Journal:  BMC Genomics       Date:  2012-12-13       Impact factor: 3.969
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