Literature DB >> 22298224

Enhanced discrimination of DNA molecules in nanofluidic channels through multiple measurements.

Yi-Heng Sen1, Tarun Jain, Carlos A Aguilar, Rohit Karnik.   

Abstract

Nanofluidic sensing elements have been the focus of recent experiments for numerous applications ranging from nucleic acid fragment sizing to single-molecule DNA sequencing. These applications critically rely on high measurement fidelity, and methods to increase resolution are required. Herein, we describe fabrication and testing of a nanochannel device that enhances measurement resolution by performing multiple measurements (>100) on single DNA molecules. The enhanced measurement resolution enabled length discrimination between a mixture of λ-DNA (48.5 kbp) and T7 DNA (39.9 kbp) molecules, which were detected as transient current changes during translocation of the molecules through the nanochannel. As long DNA molecules are difficult to resolve quickly and with high fidelity with conventional electrophoresis, this approach may yield potentially portable, direct electrical sizing of DNA fragments with high sensitivity and resolution.

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Year:  2012        PMID: 22298224      PMCID: PMC3341097          DOI: 10.1039/c2lc20771k

Source DB:  PubMed          Journal:  Lab Chip        ISSN: 1473-0189            Impact factor:   6.799


  28 in total

1.  Detecting single stranded DNA with a solid state nanopore.

Authors:  Daniel Fologea; Marc Gershow; Bradley Ledden; David S McNabb; Jene A Golovchenko; Jiali Li
Journal:  Nano Lett       Date:  2005-10       Impact factor: 11.189

2.  Single DNA molecule detection using nanopipettes and nanoparticles.

Authors:  Miloslav Karhanek; Jennifer T Kemp; Nader Pourmand; Ronald W Davis; Chris D Webb
Journal:  Nano Lett       Date:  2005-02       Impact factor: 11.189

3.  Pulsed-field gel electrophoresis.

Authors:  Jill Herschleb; Gene Ananiev; David C Schwartz
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

4.  Tuneable elastomeric nanochannels for nanofluidic manipulation.

Authors:  Dongeun Huh; K L Mills; Xiaoyue Zhu; Mark A Burns; M D Thouless; Shuichi Takayama
Journal:  Nat Mater       Date:  2007-05-07       Impact factor: 43.841

5.  DNA conformation and base number simultaneously determined in a nanopore.

Authors:  Daniel Fologea; Eric Brandin; James Uplinger; Daniel Branton; Jiali Li
Journal:  Electrophoresis       Date:  2007-09       Impact factor: 3.535

6.  Recapturing and trapping single molecules with a solid-state nanopore.

Authors:  Marc Gershow; J A Golovchenko
Journal:  Nat Nanotechnol       Date:  2007-12-02       Impact factor: 39.213

Review 7.  Nanopore analytics: sensing of single molecules.

Authors:  Stefan Howorka; Zuzanna Siwy
Journal:  Chem Soc Rev       Date:  2009-06-15       Impact factor: 54.564

8.  Study on surface properties of PDMS microfluidic chips treated with albumin.

Authors:  Walter Schrott; Zdenek Slouka; Petr Cervenka; Jirí Ston; Marek Nebyla; Michal Pribyl; Dalimil Snita
Journal:  Biomicrofluidics       Date:  2009-10-12       Impact factor: 2.800

9.  Low electroosmotic flow measurement by tilting microchip.

Authors:  Fang Zhou; Wei Wang; Wen-Ya Wu; Jian-Rong Zhang; Jun-Jie Zhu
Journal:  J Chromatogr A       Date:  2008-04-08       Impact factor: 4.759

Review 10.  The potential and challenges of nanopore sequencing.

Authors:  Daniel Branton; David W Deamer; Andre Marziali; Hagan Bayley; Steven A Benner; Thomas Butler; Massimiliano Di Ventra; Slaven Garaj; Andrew Hibbs; Xiaohua Huang; Stevan B Jovanovich; Predrag S Krstic; Stuart Lindsay; Xinsheng Sean Ling; Carlos H Mastrangelo; Amit Meller; John S Oliver; Yuriy V Pershin; J Michael Ramsey; Robert Riehn; Gautam V Soni; Vincent Tabard-Cossa; Meni Wanunu; Matthew Wiggin; Jeffery A Schloss
Journal:  Nat Biotechnol       Date:  2008-10       Impact factor: 54.908

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  11 in total

1.  Characterization of Virus Capsids and Their Assembly Intermediates by Multicycle Resistive-Pulse Sensing with Four Pores in Series.

Authors:  Jinsheng Zhou; Panagiotis Kondylis; Daniel G Haywood; Zachary D Harms; Lye Siang Lee; Adam Zlotnick; Stephen C Jacobson
Journal:  Anal Chem       Date:  2018-05-29       Impact factor: 6.986

2.  Nanofluidic Devices with 8 Pores in Series for Real-Time, Resistive-Pulse Analysis of Hepatitis B Virus Capsid Assembly.

Authors:  Panagiotis Kondylis; Jinsheng Zhou; Zachary D Harms; Andrew R Kneller; Lye Siang Lee; Adam Zlotnick; Stephen C Jacobson
Journal:  Anal Chem       Date:  2017-04-17       Impact factor: 6.986

Review 3.  Conductivity-based detection techniques in nanofluidic devices.

Authors:  Zachary D Harms; Daniel G Haywood; Andrew R Kneller; Stephen C Jacobson
Journal:  Analyst       Date:  2015-05-19       Impact factor: 4.616

4.  Disassembly of Single Virus Capsids Monitored in Real Time with Multicycle Resistive-Pulse Sensing.

Authors:  Jinsheng Zhou; Adam Zlotnick; Stephen C Jacobson
Journal:  Anal Chem       Date:  2021-12-21       Impact factor: 6.986

Review 5.  Micro- and nanoscale devices for the investigation of epigenetics and chromatin dynamics.

Authors:  Carlos A Aguilar; Harold G Craighead
Journal:  Nat Nanotechnol       Date:  2013-10       Impact factor: 39.213

Review 6.  Analysis of single nucleic acid molecules in micro- and nano-fluidics.

Authors:  Sarah M Friedrich; Helena C Zec; Tza-Huei Wang
Journal:  Lab Chip       Date:  2016-03-07       Impact factor: 6.799

7.  Direct Analysis of Gene Synthesis Reactions Using Solid-State Nanopores.

Authors:  Spencer Carson; Scott T Wick; Peter A Carr; Meni Wanunu; Carlos A Aguilar
Journal:  ACS Nano       Date:  2015-11-20       Impact factor: 15.881

8.  Synchronized resistive-pulse analysis with flow visualization for single micro- and nanoscale objects driven by optical vortex in double orifice.

Authors:  Kichitaro Nakajima; Ryoji Nakatsuka; Tetsuro Tsuji; Kentaro Doi; Satoyuki Kawano
Journal:  Sci Rep       Date:  2021-04-29       Impact factor: 4.379

9.  Visualization of Optical Vortex Forces Acting on Au Nanoparticles Transported in Nanofluidic Channels.

Authors:  Kichitaro Nakajima; Tempei Tsujimura; Kentaro Doi; Satoyuki Kawano
Journal:  ACS Omega       Date:  2022-01-10

10.  Single-particle electrophoresis in nanochannels.

Authors:  Zachary D Harms; Daniel G Haywood; Andrew R Kneller; Lisa Selzer; Adam Zlotnick; Stephen C Jacobson
Journal:  Anal Chem       Date:  2014-12-09       Impact factor: 6.986

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