Literature DB >> 22297989

Expression, purification, crystallization and preliminary crystallographic analysis of a thermostable DNA ligase from the archaeon Thermococcus sibiricus.

T E Petrova1, E Y Bezsudnova, B D Dorokhov, E S Slutskaya, K M Polyakov, P V Dorovatovskiy, N V Ravin, K G Skryabin, M V Kovalchuk, V O Popov.   

Abstract

DNA ligases join single-strand breaks in double-stranded DNA by catalyzing the formation of a phosphodiester bond between adjacent 5'-phosphate and 3'-hydroxyl termini. Their function is essential to maintain the integrity of the genome in DNA replication, recombination and repair. A recombinant ATP-dependent DNA ligase from the hyperthermophilic anaerobic archaeon Thermococcus sibiricus was expressed in Escherichia coli and purified. Crystals were grown by vapour diffusion using the hanging-drop method with 17%(w/v) PEG 4000 and 8.5%(v/v) 2-propanol as precipitants. A diffraction experiment was performed with a single crystal, which diffracted X-rays to 3.0 Å resolution. The crystal belonged to space group P2(1)2(1)2(1), with unit-cell parameters a = 58.590, b = 87.540, c = 126.300 Å.

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Year:  2012        PMID: 22297989      PMCID: PMC3274393          DOI: 10.1107/S1744309111050913

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  19 in total

1.  The closed structure of an archaeal DNA ligase from Pyrococcus furiosus.

Authors:  Hirokazu Nishida; Shinichi Kiyonari; Yoshizumi Ishino; Kosuke Morikawa
Journal:  J Mol Biol       Date:  2006-06-12       Impact factor: 5.469

2.  Cloning, expression, and characterization of a DNA ligase from a hyperthermophilic archaeon Thermococcus sp.

Authors:  Yun Jae Kim; Hyun Sook Lee; Seung Seob Bae; Jung Ho Jeon; Sung Hyun Yang; Jae Kyu Lim; Sung Gyun Kang; Suk-Tae Kwon; Jung-Hyun Lee
Journal:  Biotechnol Lett       Date:  2006-03       Impact factor: 2.461

3.  A flexible interface between DNA ligase and PCNA supports conformational switching and efficient ligation of DNA.

Authors:  John M Pascal; Oleg V Tsodikov; Greg L Hura; Wei Song; Elizabeth A Cotner; Scott Classen; Alan E Tomkinson; John A Tainer; Tom Ellenberger
Journal:  Mol Cell       Date:  2006-10-20       Impact factor: 17.970

4.  Biochemical characterization of an ATP-dependent DNA ligase from the hyperthermophilic crenarchaeon Sulfolobus shibatae.

Authors:  Xiaoqin Lai; Hongbing Shao; Fuying Hao; Li Huang
Journal:  Extremophiles       Date:  2002-07-30       Impact factor: 2.395

5.  Characterization of an ATP-dependent DNA ligase from the thermophilic archaeon Methanobacterium thermoautotrophicum.

Authors:  V Sriskanda; Z Kelman; J Hurwitz; S Shuman
Journal:  Nucleic Acids Res       Date:  2000-06-01       Impact factor: 16.971

Review 6.  DNA ligase: structure, mechanism, and function.

Authors:  I R Lehman
Journal:  Science       Date:  1974-11-29       Impact factor: 47.728

7.  Characterization of a thermophilic ATP-dependent DNA ligase from the euryarchaeon Pyrococcus horikoshii.

Authors:  Niroshika Keppetipola; Stewart Shuman
Journal:  J Bacteriol       Date:  2005-10       Impact factor: 3.490

8.  Characterization of a thermophilic DNA ligase from the archaeon Thermococcus fumicolans.

Authors:  Jean-luc Rolland; Yannick Gueguen; Cècile Persillon; Jean-Michel Masson; Jacques Dietrich
Journal:  FEMS Microbiol Lett       Date:  2004-07-15       Impact factor: 2.742

9.  Overview of the CCP4 suite and current developments.

Authors:  Martyn D Winn; Charles C Ballard; Kevin D Cowtan; Eleanor J Dodson; Paul Emsley; Phil R Evans; Ronan M Keegan; Eugene B Krissinel; Andrew G W Leslie; Airlie McCoy; Stuart J McNicholas; Garib N Murshudov; Navraj S Pannu; Elizabeth A Potterton; Harold R Powell; Randy J Read; Alexei Vagin; Keith S Wilson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18

10.  BALBES: a molecular-replacement pipeline.

Authors:  Fei Long; Alexei A Vagin; Paul Young; Garib N Murshudov
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2007-12-05
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  3 in total

1.  Biochemical and Structural Characterisation of DNA Ligases from Bacteria and Archaea.

Authors:  Giulia Pergolizzi; Gerd K Wagner; Richard Peter Bowater
Journal:  Biosci Rep       Date:  2016-10-06       Impact factor: 3.840

Review 2.  Archaeal Nucleic Acid Ligases and Their Potential in Biotechnology.

Authors:  Cecilia R Chambers; Wayne M Patrick
Journal:  Archaea       Date:  2015-10-01       Impact factor: 3.273

Review 3.  Biotechnological applications of archaeal enzymes from extreme environments.

Authors:  Ma Ángeles Cabrera; Jenny M Blamey
Journal:  Biol Res       Date:  2018-10-05       Impact factor: 5.612

  3 in total

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