Literature DB >> 21505237

Structure of Francisella tularensis peptidyl-tRNA hydrolase.

Teresa E Clarke1, Vladimir Romanov, Robert Lam, Scott A Gothe, Srinivasa R Peddi, Ekaterina B Razumova, Richard S A Lipman, Arthur A Branstrom, Nickolay Y Chirgadze.   

Abstract

The rational design of novel antibiotics for bacteria involves the identification of inhibitors for enzymes involved in essential biochemical pathways in cells. In this study, the cloning, expression, purification, crystallization and structure of the enzyme peptidyl-tRNA hydrolase from Francisella tularensis, the causative agent of tularemia, was performed. The structure of F. tularensis peptidyl-tRNA hydrolase is comparable to those of other bacterial peptidyl-tRNA hydrolases, with most residues in the active site conserved amongst the family. The resultant reagents, structural data and analyses provide essential information for the structure-based design of novel inhibitors for this class of proteins.

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Year:  2011        PMID: 21505237      PMCID: PMC3080146          DOI: 10.1107/S174430911100515X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  20 in total

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Authors:  David J Payne; Michael N Gwynn; David J Holmes; David L Pompliano
Journal:  Nat Rev Drug Discov       Date:  2006-12-08       Impact factor: 84.694

2.  Orthologs of a novel archaeal and of the bacterial peptidyl-tRNA hydrolase are nonessential in yeast.

Authors:  Guillermina Rosas-Sandoval; Alexandre Ambrogelly; Jesse Rinehart; David Wei; L Rogelio Cruz-Vera; David E Graham; Karl O Stetter; Gabriel Guarneros; Dieter Söll
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-10       Impact factor: 11.205

3.  Purification and properties of peptidyl-tRNA hydrolase from Escherichia coli.

Authors:  H Kössel
Journal:  Biochim Biophys Acta       Date:  1970-03-19

4.  Crystal structure at 1.8 A resolution and identification of active site residues of Sulfolobus solfataricus peptidyl-tRNA hydrolase.

Authors:  Michel Fromant; Emmanuelle Schmitt; Yves Mechulam; Christine Lazennec; Pierre Plateau; Sylvain Blanquet
Journal:  Biochemistry       Date:  2005-03-22       Impact factor: 3.162

5.  Structural analysis of the group II intron splicing factor CRS2 yields insights into its protein and RNA interaction surfaces.

Authors:  Gerard J Ostheimer; Haralambos Hadjivassiliou; Haralambos Hadjivasiliou; Daniel P Kloer; Alice Barkan; Brian W Matthews
Journal:  J Mol Biol       Date:  2005-01-07       Impact factor: 5.469

Review 6.  Tularaemia: bioterrorism defence renews interest in Francisella tularensis.

Authors:  Petra C F Oyston; Anders Sjostedt; Richard W Titball
Journal:  Nat Rev Microbiol       Date:  2004-12       Impact factor: 60.633

7.  Essential role of histidine 20 in the catalytic mechanism of Escherichia coli peptidyl-tRNA hydrolase.

Authors:  Jonathan J Goodall; Guo Jun Chen; Malcolm G P Page
Journal:  Biochemistry       Date:  2004-04-20       Impact factor: 3.162

8.  Solution structure and dynamics of peptidyl-tRNA hydrolase from Mycobacterium tuberculosis H37Rv.

Authors:  S V S R K Pulavarti; Anupam Jain; Prem Prakash Pathak; Anjum Mahmood; Ashish Arora
Journal:  J Mol Biol       Date:  2008-02-21       Impact factor: 5.469

9.  Peptidyl-tRNA hydrolase in Bacillus subtilis, encoded by spoVC, is essential to vegetative growth, whereas the homologous enzyme in Saccharomyces cerevisiae is dispensable.

Authors:  Jeanne Menez; Richard H Buckingham; Miklos de Zamaroczy; Celine Karmazyn Campelli
Journal:  Mol Microbiol       Date:  2002-07       Impact factor: 3.501

10.  Structural plasticity and enzyme action: crystal structures of mycobacterium tuberculosis peptidyl-tRNA hydrolase.

Authors:  M Selvaraj; Siddhartha Roy; N S Singh; R Sangeetha; Umesh Varshney; M Vijayan
Journal:  J Mol Biol       Date:  2007-06-27       Impact factor: 5.469

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  11 in total

1.  Crystallization and preliminary X-ray analysis of peptidyl-tRNA hydrolase from Escherichia coli in complex with the acceptor-TΨC domain of tRNA.

Authors:  Kosuke Ito; Hao Qi; Yoshihiro Shimizu; Ryo Murakami; Kin-ichiro Miura; Takuya Ueda; Toshio Uchiumi
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-11-26

2.  Crowding, molecular volume and plasticity: an assessment involving crystallography, NMR and simulations.

Authors:  M Selvaraj; Rais Ahmad; Umesh Varshney; M Vijayan
Journal:  J Biosci       Date:  2012-12       Impact factor: 1.826

3.  Crystallization and preliminary X-ray analysis of peptidyl-tRNA hydrolase from Thermus thermophilus HB8.

Authors:  Ami Matsumoto; Yoshihiro Shimizu; Chie Takemoto; Takuya Ueda; Toshio Uchiumi; Kosuke Ito
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-02-27

4.  Recombinant production, crystallization and X-ray crystallographic structure determination of peptidyl-tRNA hydrolase from Salmonella typhimurium.

Authors:  Venugopal Vandavasi; Kasey Taylor-Creel; Robert L McFeeters; Leighton Coates; Hana McFeeters
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-06-18       Impact factor: 1.056

5.  Structures of new crystal forms of Mycobacterium tuberculosis peptidyl-tRNA hydrolase and functionally important plasticity of the molecule.

Authors:  M Selvaraj; Rais Ahmad; Umesh Varshney; M Vijayan
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-01-21

6.  Recombinant production, crystallization and X-ray crystallographic structure determination of the peptidyl-tRNA hydrolase of Pseudomonas aeruginosa.

Authors:  Ronny C Hughes; Hana McFeeters; Leighton Coates; Robert L McFeeters
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-11-28

7.  Small molecule binding, docking, and characterization of the interaction between Pth1 and peptidyl-tRNA.

Authors:  Mary C Hames; Hana McFeeters; W Blake Holloway; Christopher B Stanley; Volker S Urban; Robert L McFeeters
Journal:  Int J Mol Sci       Date:  2013-11-19       Impact factor: 5.923

8.  Crystal structure of peptidyl-tRNA hydrolase from a Gram-positive bacterium, Streptococcus pyogenes at 2.19 Å resolution shows the closed structure of the substrate-binding cleft.

Authors:  Avinash Singh; Lovely Gautam; Mau Sinha; Asha Bhushan; Punit Kaur; Sujata Sharma; T P Singh
Journal:  FEBS Open Bio       Date:  2014-10-22       Impact factor: 2.693

9.  Small Molecule Docking Supports Broad and Narrow Spectrum Potential for the Inhibition of the Novel Antibiotic Target Bacterial Pth1.

Authors:  Paul P Ferguson; W Blake Holloway; William N Setzer; Hana McFeeters; Robert L McFeeters
Journal:  Antibiotics (Basel)       Date:  2016-05-10

10.  Structural basis for the substrate recognition and catalysis of peptidyl-tRNA hydrolase.

Authors:  Kosuke Ito; Ryo Murakami; Masahiro Mochizuki; Hao Qi; Yoshihiro Shimizu; Kin-ichiro Miura; Takuya Ueda; Toshio Uchiumi
Journal:  Nucleic Acids Res       Date:  2012-08-25       Impact factor: 16.971

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