Literature DB >> 22291979

The complete chloroplast and mitochondrial genome sequences of Boea hygrometrica: insights into the evolution of plant organellar genomes.

Tongwu Zhang1, Yongjun Fang, Xumin Wang, Xin Deng, Xiaowei Zhang, Songnian Hu, Jun Yu.   

Abstract

The complete nucleotide sequences of the chloroplast (cp) and mitochondrial (mt) genomes of resurrection plant Boea hygrometrica (Bh, Gesneriaceae) have been determined with the lengths of 153,493 bp and 510,519 bp, respectively. The smaller chloroplast genome contains more genes (147) with a 72% coding sequence, and the larger mitochondrial genome have less genes (65) with a coding faction of 12%. Similar to other seed plants, the Bh cp genome has a typical quadripartite organization with a conserved gene in each region. The Bh mt genome has three recombinant sequence repeats of 222 bp, 843 bp, and 1474 bp in length, which divide the genome into a single master circle (MC) and four isomeric molecules. Compared to other angiosperms, one remarkable feature of the Bh mt genome is the frequent transfer of genetic material from the cp genome during recent Bh evolution. We also analyzed organellar genome evolution in general regarding genome features as well as compositional dynamics of sequence and gene structure/organization, providing clues for the understanding of the evolution of organellar genomes in plants. The cp-derived sequences including tRNAs found in angiosperm mt genomes support the conclusion that frequent gene transfer events may have begun early in the land plant lineage.

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Year:  2012        PMID: 22291979      PMCID: PMC3264610          DOI: 10.1371/journal.pone.0030531

Source DB:  PubMed          Journal:  PLoS One        ISSN: 1932-6203            Impact factor:   3.240


  46 in total

1.  Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis.

Authors:  J Castresana
Journal:  Mol Biol Evol       Date:  2000-04       Impact factor: 16.240

2.  Automatic annotation of organellar genomes with DOGMA.

Authors:  Stacia K Wyman; Robert K Jansen; Jeffrey L Boore
Journal:  Bioinformatics       Date:  2004-06-04       Impact factor: 6.937

Review 3.  Cis- and trans-splicing of group II introns in plant mitochondria.

Authors:  Linda Bonen
Journal:  Mitochondrion       Date:  2007-10-11       Impact factor: 4.160

4.  The chloroplast genome of Phalaenopsis aphrodite (Orchidaceae): comparative analysis of evolutionary rate with that of grasses and its phylogenetic implications.

Authors:  Ching-Chun Chang; Hsien-Chia Lin; I-Pin Lin; Teh-Yuan Chow; Hong-Hwa Chen; Wen-Huei Chen; Chia-Hsiung Cheng; Chung-Yen Lin; Shu-Mei Liu; Chien-Chang Chang; Shu-Miaw Chaw
Journal:  Mol Biol Evol       Date:  2005-10-05       Impact factor: 16.240

5.  The mitochondrial genome of Arabidopsis thaliana contains 57 genes in 366,924 nucleotides.

Authors:  M Unseld; J R Marienfeld; P Brandt; A Brennicke
Journal:  Nat Genet       Date:  1997-01       Impact factor: 38.330

6.  The complete nucleotide sequence of the mitochondrial genome of sugar beet (Beta vulgaris L.) reveals a novel gene for tRNA(Cys)(GCA).

Authors:  T Kubo; S Nishizawa; A Sugawara; N Itchoda; A Estiati; T Mikami
Journal:  Nucleic Acids Res       Date:  2000-07-01       Impact factor: 16.971

7.  Evolution of plant mitochondrial genomes via substoichiometric intermediates.

Authors:  I Small; R Suffolk; C J Leaver
Journal:  Cell       Date:  1989-07-14       Impact factor: 41.582

8.  Ebb and flow of the chloroplast inverted repeat.

Authors:  S E Goulding; R G Olmstead; C W Morden; K H Wolfe
Journal:  Mol Gen Genet       Date:  1996-08-27

9.  Transfer RNAs of potato (Solanum tuberosum) mitochondria have different genetic origins.

Authors:  L Maréchal-Drouard; P Guillemaut; A Cosset; M Arbogast; F Weber; J H Weil; A Dietrich
Journal:  Nucleic Acids Res       Date:  1990-07-11       Impact factor: 16.971

10.  Extreme RNA editing in coding islands and abundant microsatellites in repeat sequences of Selaginella moellendorffii mitochondria: the root of frequent plant mtDNA recombination in early tracheophytes.

Authors:  Julia Hecht; Felix Grewe; Volker Knoop
Journal:  Genome Biol Evol       Date:  2011-03-23       Impact factor: 3.416

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  41 in total

1.  Application of Chloroplast Phylogenomics to Resolve Species Relationships Within the Plant Genus Amaranthus.

Authors:  Erika Viljoen; Damaris A Odeny; Martin P A Coetzee; Dave K Berger; David J G Rees
Journal:  J Mol Evol       Date:  2018-03-19       Impact factor: 2.395

2.  Comparative analysis of chloroplast genome structure and molecular dating in Myrtales.

Authors:  Xiao-Feng Zhang; Jacob B Landis; Hong-Xin Wang; Zhi-Xin Zhu; Hua-Feng Wang
Journal:  BMC Plant Biol       Date:  2021-05-15       Impact factor: 4.215

3.  The organelle genomes of Hassawi rice (Oryza sativa L.) and its hybrid in saudi arabia: genome variation, rearrangement, and origins.

Authors:  Tongwu Zhang; Songnian Hu; Guangyu Zhang; Linlin Pan; Xiaowei Zhang; Ibrahim S Al-Mssallem; Jun Yu
Journal:  PLoS One       Date:  2012-07-31       Impact factor: 3.240

4.  The mitochondrial genome of an aquatic plant, Spirodela polyrhiza.

Authors:  Wenqin Wang; Yongrui Wu; Joachim Messing
Journal:  PLoS One       Date:  2012-10-04       Impact factor: 3.240

5.  The mitochondrial genome of soybean reveals complex genome structures and gene evolution at intercellular and phylogenetic levels.

Authors:  Shengxin Chang; Yankun Wang; Jiangjie Lu; Junyi Gai; Jijie Li; Pu Chu; Rongzhan Guan; Tuanjie Zhao
Journal:  PLoS One       Date:  2013-02-19       Impact factor: 3.240

6.  Chloroplast genome of Aconitum barbatum var. puberulum (Ranunculaceae) derived from CCS reads using the PacBio RS platform.

Authors:  Xiaochen Chen; Qiushi Li; Ying Li; Jun Qian; Jianping Han
Journal:  Front Plant Sci       Date:  2015-02-06       Impact factor: 5.753

7.  Structural variation and evolution of chloroplast tRNAs in green algae.

Authors:  Fangbing Qi; Yajing Zhao; Ningbo Zhao; Kai Wang; Zhonghu Li; Yingjuan Wang
Journal:  PeerJ       Date:  2021-06-01       Impact factor: 2.984

8.  Characterization of the complete chloroplast genome of Sanicula rubriflora F. Schmidt ex Maxim.

Authors:  Zhen Wang; Weichao Ren; Song Yan; Meiqi Zhang; Yunwei Liu; Wei Ma
Journal:  Mitochondrial DNA B Resour       Date:  2021-06-14       Impact factor: 0.658

9.  The complete sequence of the mitochondrial genome of Butomus umbellatus--a member of an early branching lineage of monocotyledons.

Authors:  Argelia Cuenca; Gitte Petersen; Ole Seberg
Journal:  PLoS One       Date:  2013-04-24       Impact factor: 3.240

10.  The complete chloroplast genome sequence of the medicinal plant Salvia miltiorrhiza.

Authors:  Jun Qian; Jingyuan Song; Huanhuan Gao; Yingjie Zhu; Jiang Xu; Xiaohui Pang; Hui Yao; Chao Sun; Xian'en Li; Chuyuan Li; Juyan Liu; Haibin Xu; Shilin Chen
Journal:  PLoS One       Date:  2013-02-27       Impact factor: 3.240

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