Literature DB >> 22287484

Xenopus white papers and resources: folding functional genomics and genetics into the frog.

Mustafa K Khokha1.   

Abstract

The frog Xenopus has been vital for biomedical science for over 80 years, contributing to diverse fields from cell signaling, cell and developmental biology, to ion channel physiology and toxicology. Its experimentally manipulable oocytes and embryos provide abundant material for molecular and biochemical approaches for a wide range of gene discovery and protein function studies. In recent years, the Xenopus community has invested in key resources for functional genomics, including genome-wide full-length cDNA collections and genome assemblies as well as genetic tools. These assets combine with Xenopus' extensive range of functional assays to create exciting new research avenues with medical as well as basic applications. This review describes how these resources were developed and what new tools are on the horizon.
Copyright © 2012 Wiley Periodicals, Inc.

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Year:  2012        PMID: 22287484     DOI: 10.1002/dvg.22015

Source DB:  PubMed          Journal:  Genesis        ISSN: 1526-954X            Impact factor:   2.487


  15 in total

1.  An interspecies heart-to-heart: Using Xenopus to uncover the genetic basis of congenital heart disease.

Authors:  Alexandra MacColl Garfinkel; Mustafa K Khokha
Journal:  Curr Pathobiol Rep       Date:  2017-05-06

Review 2.  Expanding the genetic toolkit in Xenopus: Approaches and opportunities for human disease modeling.

Authors:  Panna Tandon; Frank Conlon; J David Furlow; Marko E Horb
Journal:  Dev Biol       Date:  2016-04-22       Impact factor: 3.582

3.  Gaussian process post-processing for particle tracking velocimetry.

Authors:  Tommy Tang; Engin Deniz; Mustafa K Khokha; Hemant D Tagare
Journal:  Biomed Opt Express       Date:  2019-06-07       Impact factor: 3.732

4.  A potential molecular pathogenesis of cardiac/laterality defects in Oculo-Facio-Cardio-Dental syndrome.

Authors:  Koichi Tanaka; Akiko Kato; Chelsea Angelocci; Minoru Watanabe; Yoichi Kato
Journal:  Dev Biol       Date:  2014-01-17       Impact factor: 3.582

Review 5.  Using Xenopus to discover new genes involved in branchiootorenal spectrum disorders.

Authors:  Sally A Moody; Karen M Neilson; Kristy L Kenyon; Dominique Alfandari; Francesca Pignoni
Journal:  Comp Biochem Physiol C Toxicol Pharmacol       Date:  2015-06-24       Impact factor: 3.228

6.  Semi-solid tumor model in Xenopus laevis/gilli cloned tadpoles for intravital study of neovascularization, immune cells and melanophore infiltration.

Authors:  Nikesha Haynes-Gimore; Maureen Banach; Edward Brown; Ryan Dawes; Eva-Stina Edholm; Minsoo Kim; Jacques Robert
Journal:  Dev Biol       Date:  2015-01-17       Impact factor: 3.582

7.  Subcellular metabolite and lipid analysis of Xenopus laevis eggs by LAESI mass spectrometry.

Authors:  Bindesh Shrestha; Prabhakar Sripadi; Brent R Reschke; Holly D Henderson; Matthew J Powell; Sally A Moody; Akos Vertes
Journal:  PLoS One       Date:  2014-12-15       Impact factor: 3.240

Review 8.  Xenopus as a platform for discovery of genes relevant to human disease.

Authors:  Valentyna Kostiuk; Mustafa K Khokha
Journal:  Curr Top Dev Biol       Date:  2021-04-23       Impact factor: 4.897

9.  Exon capture and bulk segregant analysis: rapid discovery of causative mutations using high-throughput sequencing.

Authors:  Florencia del Viso; Dipankan Bhattacharya; Yong Kong; Michael J Gilchrist; Mustafa K Khokha
Journal:  BMC Genomics       Date:  2012-11-21       Impact factor: 3.969

10.  Enhanced XAO: the ontology of Xenopus anatomy and development underpins more accurate annotation of gene expression and queries on Xenbase.

Authors:  Erik Segerdell; Virgilio G Ponferrada; Christina James-Zorn; Kevin A Burns; Joshua D Fortriede; Wasila M Dahdul; Peter D Vize; Aaron M Zorn
Journal:  J Biomed Semantics       Date:  2013-10-18
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