Literature DB >> 22285924

Structural biology of the chromodomain: form and function.

Joel C Eissenberg1.   

Abstract

The chromodomain motif is found among certain chromosomal proteins of all eukaryotes. The chromodomain fold - three beta strands packed against a C-terminal alpha helix - mediates protein-protein and/or protein-nucleic acid interactions. In some cases, the affinity of chromodomain binding is regulated by lysine methylation, which appears to target chromodomain proteins and associated complexes to specific sites in chromatin. In this review, our current knowledge of chromodomain structure and function is summarized. Copyright Â
© 2012 Elsevier B.V. All rights reserved.

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Year:  2012        PMID: 22285924     DOI: 10.1016/j.gene.2012.01.003

Source DB:  PubMed          Journal:  Gene        ISSN: 0378-1119            Impact factor:   3.688


  34 in total

1.  Chromodomain Ligand Optimization via Target-Class Directed Combinatorial Repurposing.

Authors:  Kimberly D Barnash; Kelsey N Lamb; Jacob I Stuckey; Jacqueline L Norris; Stephanie H Cholensky; Dmitri B Kireev; Stephen V Frye; Lindsey I James
Journal:  ACS Chem Biol       Date:  2016-07-14       Impact factor: 5.100

Review 2.  Architects of the genome: CHD dysfunction in cancer, developmental disorders and neurological syndromes.

Authors:  Wangzhi Li; Alea A Mills
Journal:  Epigenomics       Date:  2014       Impact factor: 4.778

3.  The Mi-2 homolog Mit1 actively positions nucleosomes within heterochromatin to suppress transcription.

Authors:  Kevin M Creamer; Godwin Job; Sreenath Shanker; Geoffrey A Neale; Yuan-chi Lin; Blaine Bartholomew; Janet F Partridge
Journal:  Mol Cell Biol       Date:  2014-03-24       Impact factor: 4.272

Review 4.  The emerging role of epigenetics in pulmonary arterial hypertension: an important avenue for clinical trials (2015 Grover Conference Series).

Authors:  Jessica H Huston; John J Ryan
Journal:  Pulm Circ       Date:  2016-09       Impact factor: 3.017

5.  The Eaf3/5/7 Subcomplex Stimulates NuA4 Interaction with Methylated Histone H3 Lys-36 and RNA Polymerase II.

Authors:  Anish Sathianathan; Priyadarshini Ravichandran; Jake M Lippi; Leah Cohen; Angelo Messina; Sherwin Shaju; Marci J Swede; Daniel S Ginsburg
Journal:  J Biol Chem       Date:  2016-08-17       Impact factor: 5.157

6.  Product binding enforces the genomic specificity of a yeast polycomb repressive complex.

Authors:  Phillip A Dumesic; Christina M Homer; James J Moresco; Lindsey R Pack; Erin K Shanle; Scott M Coyle; Brian D Strahl; Danica G Fujimori; John R Yates; Hiten D Madhani
Journal:  Cell       Date:  2014-12-18       Impact factor: 41.582

7.  Structure-Activity Relationships and Kinetic Studies of Peptidic Antagonists of CBX Chromodomains.

Authors:  Jacob I Stuckey; Catherine Simpson; Jacqueline L Norris-Drouin; Stephanie H Cholensky; Junghyun Lee; Ryan Pasca; Nancy Cheng; Bradley M Dickson; Kenneth H Pearce; Stephen V Frye; Lindsey I James
Journal:  J Med Chem       Date:  2016-09-19       Impact factor: 7.446

8.  Phf19 links methylated Lys36 of histone H3 to regulation of Polycomb activity.

Authors:  Cecilia Ballaré; Martin Lange; Audrone Lapinaite; Gloria Mas Martin; Lluis Morey; Gloria Pascual; Robert Liefke; Bernd Simon; Yang Shi; Or Gozani; Teresa Carlomagno; Salvador Aznar Benitah; Luciano Di Croce
Journal:  Nat Struct Mol Biol       Date:  2012-10-28       Impact factor: 15.369

9.  Piccolo NuA4-catalyzed acetylation of nucleosomal histones: critical roles of an Esa1 Tudor/chromo barrel loop and an Epl1 enhancer of polycomb A (EPcA) basic region.

Authors:  Jiehuan Huang; Song Tan
Journal:  Mol Cell Biol       Date:  2012-10-29       Impact factor: 4.272

10.  YHMI: a web tool to identify histone modifications and histone/chromatin regulators from a gene list in yeast.

Authors:  Wei-Sheng Wu; Hao-Ping Tu; Yu-Han Chu; Torbjörn E M Nordling; Yan-Yuan Tseng; Hung-Jiun Liaw
Journal:  Database (Oxford)       Date:  2018-01-01       Impact factor: 3.451

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