Literature DB >> 22281764

Arabidopsis thaliana as a model for the genetics of local adaptation.

Brandon Gaut.   

Abstract

A new study reports SNP genotypes of over 1,300 Arabidopsis thaliana accessions from throughout Eurasia, providing a resource for genome-wide association studies and studies of local adaptation. The extensive data are also used to identify targets of natural selection and to describe genome-wide patterns of recombination.

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Mesh：

Year:  2012        PMID： 22281764     DOI： 10.1038/ng.1079

Source DB:  PubMed          Journal:  Nat Genet        ISSN： 1061-4036            Impact factor:   38.330


  14 in total

Review 1.  Molecular spandrels: tests of adaptation at the genetic level.

Authors:  Rowan D H Barrett; Hopi E Hoekstra
Journal:  Nat Rev Genet       Date:  2011-10-18       Impact factor: 53.242

2.  Recombination and linkage disequilibrium in Arabidopsis thaliana.

Authors:  Sung Kim; Vincent Plagnol; Tina T Hu; Christopher Toomajian; Richard M Clark; Stephan Ossowski; Joseph R Ecker; Detlef Weigel; Magnus Nordborg
Journal:  Nat Genet       Date:  2007-08-05       Impact factor: 38.330

3.  Natural variation for seed dormancy in Arabidopsis is regulated by additive genetic and molecular pathways.

Authors:  Leónie Bentsink; Johannes Hanson; Corrie J Hanhart; Hetty Blankestijn-de Vries; Colin Coltrane; Paul Keizer; Mohamed El-Lithy; Carlos Alonso-Blanco; M Teresa de Andrés; Matthieu Reymond; Fred van Eeuwijk; Sjef Smeekens; Maarten Koornneef
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-09       Impact factor: 11.205

4.  Identification and high-density mapping of gene-rich regions in chromosome group 1 of wheat.

Authors:  K S Gill; B S Gill; T R Endo; T Taylor
Journal:  Genetics       Date:  1996-12       Impact factor: 4.562

5.  A latitudinal cline in flowering time in Arabidopsis thaliana modulated by the flowering time gene FRIGIDA.

Authors:  John R Stinchcombe; Cynthia Weinig; Mark Ungerer; Kenneth M Olsen; Charlotte Mays; Solveig S Halldorsdottir; Michael D Purugganan; Johanna Schmitt
Journal:  Proc Natl Acad Sci U S A       Date:  2004-03-19       Impact factor: 11.205

6.  The scale of population structure in Arabidopsis thaliana.

Authors:  Alexander Platt; Matthew Horton; Yu S Huang; Yan Li; Alison E Anastasio; Ni Wayan Mulyati; Jon Agren; Oliver Bossdorf; Diane Byers; Kathleen Donohue; Megan Dunning; Eric B Holub; Andrew Hudson; Valérie Le Corre; Olivier Loudet; Fabrice Roux; Norman Warthmann; Detlef Weigel; Luz Rivero; Randy Scholl; Magnus Nordborg; Joy Bergelson; Justin O Borevitz
Journal:  PLoS Genet       Date:  2010-02-12       Impact factor: 5.917

7.  Highly integrated single-base resolution maps of the epigenome in Arabidopsis.

Authors:  Ryan Lister; Ronan C O'Malley; Julian Tonti-Filippini; Brian D Gregory; Charles C Berry; A Harvey Millar; Joseph R Ecker
Journal:  Cell       Date:  2008-05-02       Impact factor: 41.582

8.  Common sequence polymorphisms shaping genetic diversity in Arabidopsis thaliana.

Authors:  Richard M Clark; Gabriele Schweikert; Christopher Toomajian; Stephan Ossowski; Georg Zeller; Paul Shinn; Norman Warthmann; Tina T Hu; Glenn Fu; David A Hinds; Huaming Chen; Kelly A Frazer; Daniel H Huson; Bernhard Schölkopf; Magnus Nordborg; Gunnar Rätsch; Joseph R Ecker; Detlef Weigel
Journal:  Science       Date:  2007-07-20       Impact factor: 47.728

9.  Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines.

Authors:  Susanna Atwell; Yu S Huang; Bjarni J Vilhjálmsson; Glenda Willems; Matthew Horton; Yan Li; Dazhe Meng; Alexander Platt; Aaron M Tarone; Tina T Hu; Rong Jiang; N Wayan Muliyati; Xu Zhang; Muhammad Ali Amer; Ivan Baxter; Benjamin Brachi; Joanne Chory; Caroline Dean; Marilyne Debieu; Juliette de Meaux; Joseph R Ecker; Nathalie Faure; Joel M Kniskern; Jonathan D G Jones; Todd Michael; Adnane Nemri; Fabrice Roux; David E Salt; Chunlao Tang; Marco Todesco; M Brian Traw; Detlef Weigel; Paul Marjoram; Justin O Borevitz; Joy Bergelson; Magnus Nordborg
Journal:  Nature       Date:  2010-03-24       Impact factor: 49.962

10.  Genome-wide patterns of genetic variation in worldwide Arabidopsis thaliana accessions from the RegMap panel.

Authors:  Matthew W Horton; Angela M Hancock; Yu S Huang; Christopher Toomajian; Susanna Atwell; Adam Auton; N Wayan Muliyati; Alexander Platt; F Gianluca Sperone; Bjarni J Vilhjálmsson; Magnus Nordborg; Justin O Borevitz; Joy Bergelson
Journal:  Nat Genet       Date:  2012-01-08       Impact factor: 38.330
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  7 in total

1.  Environmental adaptation contributes to gene polymorphism across the Arabidopsis thaliana genome.

Authors:  Cheng-Ruei Lee; Thomas Mitchell-Olds
Journal:  Mol Biol Evol       Date:  2012-07-13       Impact factor: 16.240

2.  Natural variation in stomata size contributes to the local adaptation of water-use efficiency in Arabidopsis thaliana.

Authors:  Hannes Dittberner; Arthur Korte; Tabea Mettler-Altmann; Andreas P M Weber; Grey Monroe; Juliette de Meaux
Journal:  Mol Ecol       Date:  2018-09-19       Impact factor: 6.185

3.  Water availability as an agent of selection in introduced populations of Arabidopsis thaliana: impacts on flowering time evolution.

Authors:  Amanda J Stock; Brechann V McGoey; John R Stinchcombe
Journal:  PeerJ       Date:  2015-04-16       Impact factor: 2.984

4.  Metabolic fingerprinting of Arabidopsis thaliana accessions.

Authors:  Mariana Sotelo-Silveira; Anne-Laure Chauvin; Nayelli Marsch-Martínez; Robert Winkler; Stefan de Folter
Journal:  Front Plant Sci       Date:  2015-05-27       Impact factor: 5.753

5.  Keeping it local: evidence for positive selection in Swedish Arabidopsis thaliana.

Authors:  Christian D Huber; Magnus Nordborg; Joachim Hermisson; Ines Hellmann
Journal:  Mol Biol Evol       Date:  2014-08-25       Impact factor: 16.240

6.  Adaptation of Arabidopsis thaliana to the Yangtze River basin.

Authors:  Yu-Pan Zou; Xing-Hui Hou; Qiong Wu; Jia-Fu Chen; Zi-Wen Li; Ting-Shen Han; Xiao-Min Niu; Li Yang; Yong-Chao Xu; Jie Zhang; Fu-Min Zhang; Dunyan Tan; Zhixi Tian; Hongya Gu; Ya-Long Guo
Journal:  Genome Biol       Date:  2017-12-28       Impact factor: 13.583

7.  Population genomic footprints of selection and associations with climate in natural populations of Arabidopsis halleri from the Alps.

Authors:  Martin C Fischer; Christian Rellstab; Andrew Tedder; Stefan Zoller; Felix Gugerli; Kentaro K Shimizu; Rolf Holderegger; Alex Widmer
Journal:  Mol Ecol       Date:  2013-10-28       Impact factor: 6.185
  7 in total

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