Literature DB >> 22276652

Excited-state electronic properties of 6-methylisoxanthopterin (6-MI): an experimental and theoretical study.

Goutham Kodali1, Madhavan Narayanan, Robert J Stanley.   

Abstract

6-Methylisoxanthopterin (6-MI) is a pteridine-based guanine analog that has a red-shifted absorption and high fluorescence quantum yield. Its Watson-Crick base-pairing and base stacking properties are similar to guanine. The fluorescence quantum yield of 6-MI is sensitive to its nearest neighbors and base stacking, making it a very useful real-time probe of DNA structure. The fundamental photophysics underlying this fluorescence quenching by base stacking is not well understood. We have explored the excited-state electronic structure of the 6-MI in frozen 77 K LiCl glasses using Stark spectroscopy. These measurements yielded the direction and degree of charge redistribution for the S(0)→S(1) transition as manifested in the difference dipole moment, Δμ(01), and difference static polarizability, TrΔα. TDDFT (time-dependent density functional theory) was employed to calculate the transition energy, oscillator strength, and the dipole moments of the ground and lowest optically bright excited state of 6-MI (S(0)→S(1)). The direction of Δμ(01) was assigned in the molecular frame based on the Stark data and calculations. These results suggest that the C4═O and C2-NH(2) groups are electron-deficient in the excited state, a very different outcome compared with guanine. This implies that Watson-Crick hydrogen bonding in 6-MI may be modulated by absorption of a photon so as to strengthen base pairing, if only transiently. Solvatochromism was also obtained for the absorption and emission spectra of 6-MI in various solvents and compared with the Stark spectroscopic results using both the Lippert-Mataga and Bakhshiev models.

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Year:  2012        PMID: 22276652     DOI: 10.1021/jp2110083

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  3 in total

1.  Measuring electronic structure properties of flavins and flavoproteins by electronic Stark spectroscopy.

Authors:  Robert J Stanley; Cornelius J van Galen
Journal:  Methods Enzymol       Date:  2019-04-27       Impact factor: 1.600

2.  Overlapping Electronic States with Nearly Parallel Transition Dipole Moments in Reduced Anionic Flavin Can Distort Photobiological Dynamics.

Authors:  Raymond F Pauszek; Goutham Kodali; M Salim U Siddiqui; Robert J Stanley
Journal:  J Am Chem Soc       Date:  2016-11-08       Impact factor: 15.419

3.  Electronic transition moments of 6-methyl isoxanthopterin--a fluorescent analogue of the nucleic acid base guanine.

Authors:  Julia R Widom; Dmitrij Rappoport; Alejandro Perdomo-Ortiz; Hanna Thomsen; Neil P Johnson; Peter H von Hippel; Alán Aspuru-Guzik; Andrew H Marcus
Journal:  Nucleic Acids Res       Date:  2012-11-26       Impact factor: 16.971

  3 in total

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