Literature DB >> 22275096

Complete genome sequence of the fenitrothion-degrading Burkholderia sp. strain YI23.

Jong Sung Lim1, Beom Soon Choi, Ah Young Choi, Kyung Duk Kim, Dong In Kim, Ik Young Choi, Jong-Ok Ka.   

Abstract

Burkholderia species are ubiquitous in soil environments. Many Burkholderia species isolated from various environments have the potential to biodegrade man-made chemicals. Burkholderia sp. strain YI23 was isolated from a golf course soil and identified as a fenitrothion-degrading bacterium. In this study, we report the complete genome sequence of Burkholderia sp. strain YI23.

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Year:  2012        PMID： 22275096      PMCID： PMC3272952          DOI： 10.1128/JB.06479-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  9 in total

1.  Artemis: sequence visualization and annotation.

Authors:  K Rutherford; J Parkhill; J Crook; T Horsnell; P Rice; M A Rajandream; B Barrell
Journal:  Bioinformatics       Date:  2000-10       Impact factor: 6.937

2.  Improved microbial gene identification with GLIMMER.

Authors:  A L Delcher; D Harmon; S Kasif; O White; S L Salzberg
Journal:  Nucleic Acids Res       Date:  1999-12-01       Impact factor: 16.971

3.  Genetic and phenotypic diversity of fenitrothion-degrading bacteria isolated from soils.

Authors:  Kyung-Duk Kim; Jae-Hyung Ahn; Taesung Kim; Seong Chan Park; Chi Nam Seong; Hong-Gyu Song; Jong-Ok Ka
Journal:  J Microbiol Biotechnol       Date:  2009-02       Impact factor: 2.351

4.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

Review 5.  Microbial degradation of organophosphorus compounds.

Authors:  Brajesh K Singh; Allan Walker
Journal:  FEMS Microbiol Rev       Date:  2006-05       Impact factor: 16.408

6.  Isolation of fenitrothion-degrading strain Burkholderia sp. FDS-1 and cloning of mpd gene.

Authors:  Zhonghui Zhang; Qing Hong; Jianghong Xu; Xiaozhou Zhang; Shunpeng Li
Journal:  Biodegradation       Date:  2006-06       Impact factor: 3.909

7.  Characterization of methylhydroquinone-metabolizing oxygenase genes encoded on plasmid in Burkholderia sp. NF100.

Authors:  Kanako Tago; Junichi Sato; Hideaki Takesa; Hirokazu Kawagishi; Masahito Hayatsu
Journal:  J Biosci Bioeng       Date:  2005-11       Impact factor: 2.894

8.  GenBank.

Authors:  Dennis A Benson; Ilene Karsch-Mizrachi; David J Lipman; James Ostell; David L Wheeler
Journal:  Nucleic Acids Res       Date:  2007-12-11       Impact factor: 16.971

9.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971
  9 in total
  11 in total

1.  Culturing and Characterization of Gut Symbiont Burkholderia spp. from the Southern Chinch Bug, Blissus insularis (Hemiptera: Blissidae).

Authors:  Yao Xu; Eileen A Buss; Drion G Boucias
Journal:  Appl Environ Microbiol       Date:  2016-05-16       Impact factor: 4.792

2.  Transcriptional activation of multiple operons involved in para-nitrophenol degradation by Pseudomonas sp. Strain WBC-3.

Authors:  Wen-Mao Zhang; Jun-Jie Zhang; Xuan Jiang; Hongjun Chao; Ning-Yi Zhou
Journal:  Appl Environ Microbiol       Date:  2014-10-17       Impact factor: 4.792

3.  Evidence of horizontal gene transfer between obligate leaf nodule symbionts.

Authors:  Marta Pinto-Carbó; Simon Sieber; Steven Dessein; Thomas Wicker; Brecht Verstraete; Karl Gademann; Leo Eberl; Aurelien Carlier
Journal:  ISME J       Date:  2016-03-15       Impact factor: 10.302

4.  Infection dynamics of insecticide-degrading symbionts from soil to insects in response to insecticide spraying.

Authors:  Hideomi Itoh; Tomoyuki Hori; Yuya Sato; Atsushi Nagayama; Kanako Tago; Masahito Hayatsu; Yoshitomo Kikuchi
Journal:  ISME J       Date:  2018-01-17       Impact factor: 10.302

5.  Draft Genome Sequence of the Organophosphorus Compound-Degrading Burkholderia zhejiangensis Strain CEIB S4-3.

Authors:  Armando Hernández-Mendoza; Fernando Martínez-Ocampo; Luis Fernando Lozano-Aguirre Beltrán; Elida Carolina Popoca-Ursino; Laura Ortiz-Hernández; Enrique Sánchez-Salinas; Edgar Dantán-González
Journal:  Genome Announc       Date:  2014-12-18

6.  Molecular signatures and phylogenomic analysis of the genus Burkholderia: proposal for division of this genus into the emended genus Burkholderia containing pathogenic organisms and a new genus Paraburkholderia gen. nov. harboring environmental species.

Authors:  Amandeep Sawana; Mobolaji Adeolu; Radhey S Gupta
Journal:  Front Genet       Date:  2014-12-19       Impact factor: 4.599

7.  Phylogenomic Study of Burkholderia glathei-like Organisms, Proposal of 13 Novel Burkholderia Species and Emended Descriptions of Burkholderia sordidicola, Burkholderia zhejiangensis, and Burkholderia grimmiae.

Authors:  Charlotte Peeters; Jan P Meier-Kolthoff; Bart Verheyde; Evie De Brandt; Vaughn S Cooper; Peter Vandamme
Journal:  Front Microbiol       Date:  2016-06-08       Impact factor: 5.640

8.  Draft Genome Sequence of Burkholderia cordobensis Type Strain LMG 27620, Isolated from Agricultural Soils in Argentina.

Authors:  Walter Omar Draghi; Ulises M Mancini Villagra; Luis Gabriel Wall; Angeles Zorreguieta
Journal:  Genome Announc       Date:  2015-10-22

9.  Genome annotation of Burkholderia sp. SJ98 with special focus on chemotaxis genes.

Authors:  Shailesh Kumar; Surendra Vikram; Gajendra Pal Singh Raghava
Journal:  PLoS One       Date:  2013-08-05       Impact factor: 3.240

10.  Analysis of nucleotide diphosphate sugar dehydrogenases reveals family and group-specific relationships.

Authors:  Nicholas Freas; Peter Newton; John Perozich
Journal:  FEBS Open Bio       Date:  2016-01-11       Impact factor: 2.693
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