| Literature DB >> 22272139 |
Silvana de O Silva1, Rosana N S Peixoto, José Rogério A Silva, Cláudio N Alves, Giselle M S P Guilhon, Lourivaldo S Santos, Davi do S B Brasil.
Abstract
Ferulic acid (FA) and its derivatives (FADs) are known for a variety of biological activities, such as photo-protective agent, antioxidant, antiatherogenic and antiplasmodial activities. During structural definition of a FAD isolated from Croton pullei, the possibility of a heterologous series made this definition difficult. In this regard, computational simulations were performed using theoretical calculations at DFT level to predict Infrared (IR) and Nuclear Magnetic Resonance (NMR) data. The IR and NMR (13)C and (1)H data were compared with the theoretical calculations performed for three structural possibilities of a heterologous series. The theoretical results were compared with the experimental data through linear regression in order to define the most probable structure and showed satisfactory values.Entities:
Keywords: B3LYP; B3PW91; DFT; IR; NMR; ferulic acid derivative
Mesh:
Substances:
Year: 2011 PMID: 22272139 PMCID: PMC3257136 DOI: 10.3390/ijms12129389
Source DB: PubMed Journal: Int J Mol Sci ISSN: 1422-0067 Impact factor: 5.923
Figure 1Planar visualization of O, S and N structure.
Experimental 13C nuclear magnetic resonance (NMR) data (Exp.), calculated 13C NMR data (Calc.) with B3PW91/DGDZVP and residue (RS) in ppm for the O, S and N structures.
| B3PW91/DGDZVP | B3LYP/6-31+G(d,p) | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Position | Exp. | Structure O | Structure S | Structure N | Structure O | Structure S | Structure N | ||||||
| Calc. | RS | Calc. | RS | Calc. | RS | Calc. | RS | Calc. | RS | Calc. | RS | ||
| 1 | 128.2 | 131.6 | 3.4 | 129.8 | 1.6 | 131.0 | 2.8 | 125.7 | 2.5 | 124.2 | 4.0 | 126.8 | 1.4 |
| 2 | 111.0 | 113.4 | 2.3 | 121.0 | 10.0 | 120.3 | 9.3 | 101.9 | 9.0 | 112.1 | 1.1 | 110.7 | 0.3 |
| 3 | 149.3 | 153.5 | 4.2 | 150.2 | 0.8 | 150.2 | 0.9 | 145.9 | 3.4 | 142.5 | 6.9 | 142.8 | 6.4 |
| 4 | 149.8 | 154.4 | 4.6 | 154.7 | 4.9 | 153.7 | 3.9 | 146.9 | 2.9 | 147.5 | 2.3 | 144.6 | 5.2 |
| 5 | 116.4 | 118.3 | 1.9 | 120.9 | 4.5 | 120.6 | 4.2 | 110.2 | 6.2 | 113.2 | 3.2 | 111.9 | 4.5 |
| 6 | 123.3 | 133.2 | 9.9 | 126.6 | 3.3 | 125.9 | 2.6 | 124.4 | 1.1 | 115.3 | 8.0 | 115.2 | 8.1 |
| 7 | 142.3 | 155.2 | 12.9 | 148.5 | 6.2 | 152.7 | 10.4 | 143.5 | 1.2 | 137.5 | 4.8 | 141.8 | 0.5 |
| 8 | 118.6 | 117.0 | 1.6 | 125.3 | 6.7 | 115.4 | 3.2 | 108.0 | 10.6 | 114.4 | 4.2 | 110.9 | 7.6 |
| 9 | 169.5 | 174.2 | 4.7 | 200.1 | 30.6 | 171.4 | 1.9 | 163.6 | 5.9 | 192.5 | 23.0 | 162.3 | 7.2 |
| 1′ | 134.7 | 138.7 | 4.0 | 140.7 | 6.0 | 139.4 | 4.7 | 129.2 | 5.5 | 135.2 | 0.5 | 133.3 | 1.4 |
| 2′ | 128.5 | 133.6 | 5.1 | 136.0 | 7.5 | 132.9 | 4.4 | 125.8 | 2.7 | 123.6 | 4.9 | 124.1 | 4.4 |
| 3′ | 116.1 | 120.3 | 4.2 | 115.7 | 0.4 | 121.8 | 5.7 | 110.9 | 5.1 | 108.4 | 7.7 | 113.0 | 3.1 |
| 4′ | 158.1 | 160.3 | 2.3 | 161.6 | 3.4 | 161.9 | 3.8 | 153.4 | 4.7 | 152.6 | 5.5 | 153.7 | 4.4 |
| 5′ | 116.1 | 116.6 | 0.5 | 121.6 | 5.5 | 116.7 | 0.6 | 108.9 | 7.2 | 111.8 | 4.3 | 109.7 | 6.4 |
| 6′ | 128.5 | 133.4 | 4.9 | 134.6 | 6.1 | 135.2 | 6.7 | 125.0 | 3.5 | 125.8 | 2.8 | 123.6 | 4.9 |
| 7′ | 73.4 | 75.1 | 1.7 | 78.6 | 5.2 | 79.4 | 5.9 | 76.2 | 2.8 | 81.7 | 8.3 | 81.9 | 8.6 |
| 8′ | 48.3 | 75.3 | 26.9 | 47.9 | 0.3 | 55.5 | 7.2 | 74.8 | 26.5 | 50.6 | 2.3 | 53.5 | 5.2 |
| OMe | 56.4 | 60.7 | 3.9 | 60.7 | 4.3 | 60.5 | 4.1 | 53.9 | 2.51 | 54.4 | 2.0 | 54.0 | 2.4 |
RS = |δexp – δcalc|
Experimental 1H NMR data (Exp.), calculated 1H NMR data (Calc.) with B3PW91/DGDZVP and residue (RS) in ppm for the O, S and N structures.
| B3PW91/DGDZVP | B3LYP/6-31+G(d,p) | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Position | Exp. | Structure O | Structure S | Structure N | Structure O | Structure S | Structure N | ||||||
| Calc. | RS | Calc. | RS | Calc. | RS | Calc. | RS | Calc. | RS | Calc. | RS | ||
| 2 | 7.11 | 6.97 | 0.14 | 6.83 | 0.28 | 6.83 | 0.28 | 7.19 | 0.08 | 6.61 | 0.50 | 6.78 | 0.33 |
| 5 | 6.78 | 6.37 | 0.41 | 7.16 | 0.38 | 7.17 | 0.39 | 6.51 | 0.27 | 7.17 | 0.39 | 7.08 | 0.30 |
| 6 | 7.01 | 6.96 | 0.05 | 7.59 | 0.58 | 7.71 | 0.70 | 6.78 | 0.23 | 7.65 | 0.64 | 7.79 | 0.78 |
| 7 | 7.43 | 7.66 | 0.23 | 7.63 | 0.20 | 7.90 | 0.47 | 7.88 | 0.45 | 7.79 | 0.36 | 7.89 | 0.46 |
| 8 | 6.45 | 5.81 | 0.64 | 6.42 | 0.03 | 6.62 | 0.17 | 6.33 | 0.12 | 6.71 | 0.26 | 7.43 | 0.98 |
| 2′ | 7.22 | 7.28 | 0.06 | 7.12 | 0.10 | 7.80 | 0.58 | 7.28 | 0.06 | 7.04 | 0.18 | 7.81 | 0.59 |
| 3′ | 6.77 | 7.15 | 0.38 | 6.43 | 0.34 | 7.23 | 0.46 | 7.08 | 0.31 | 6.47 | 0.30 | 7.24 | 0.47 |
| 5′ | 6.77 | 6.57 | 0.20 | 7.21 | 0.44 | 6.51 | 0.26 | 6.47 | 0.30 | 7.17 | 0.40 | 6.52 | 0.25 |
| 6′ | 7.22 | 7.84 | 0.62 | 7.88 | 0.66 | 7.19 | 0.03 | 7.51 | 0.29 | 8.20 | 0.98 | 7.09 | 0.13 |
| 7′ | 4.72 | 4.84 | 0.12 | 4.52 | 0.20 | 4.56 | 0.16 | 5.15 | 0.43 | 5.03 | 0.31 | 4.61 | 0.11 |
| 8′ a | 3.53 | 4.46 | 0.93 | 2.38 | 1.15 | 2.67 | 0.86 | 3.99 | 0.46 | 2.40 | 1.13 | 2.70 | 0.83 |
| 8′ b | 3.42 | 4.33 | 0.91 | 3.73 | 0.31 | 3.94 | 0.52 | 4.11 | 0.69 | 3.43 | 0.01 | 3.61 | 0.19 |
RS = |δexp – δcalc|
Experimental [22] 1H and 13C NMR data, calculated 1H NMR data (Calc.) with B3LYP/6-31+G(d,p) and residues (RS) in ppm for the FA.
| Position | 13C | 1H | ||||
|---|---|---|---|---|---|---|
| Exp. [ | Calc. | RS | Exp. [ | Calc. | RS | |
| 1 | 127.8 | 126.1 | 1.6 | - | - | |
| 2 | 111.6 | 113.5 | 1.8 | 7.2 | 6.7 | 0.5 |
| 3 | 151.5 | 145.1 | 6.4 | - | - | |
| 4 | 149.9 | 145.7 | 4.2 | - | - | |
| 5 | 116.5 | 111.4 | 5.1 | 6.8 | 6.6 | 0.2 |
| 6 | 123.9 | 113.6 | 10.4 | 7.5 | 7.5 | 0.4 |
| C-α | 115.9 | 107.7 | 8.2 | 6.3 | 6.5 | 0.2 |
| C-β | 146.9 | 147.2 | 0.3 | 7.6 | 7.8 | 0.2 |
| C=O | 171.2 | 162.7 | 8.5 | - | - | |
| OMe-3 | 56.5 | 53.9 | 2.5 | 3.9 | 3.8 | 0.1 |
RS = |δexp – δcalc|
Correlation and linear adjustment parameters for the NMR properties of the O, S and N structures and ferulic acid (FA).
| δ | MAE | CMAE | PRESS | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| B3PW91/DGDZVP | δ(1H) O | 0.80 | 1.41 | 0.90 | 0.39 | 0.40 | 0.4910 | 3.6794 | 0.19 | 86.11 | 84.12% |
| δ(1H) S | 1.16 | −0.98 | 0.94 | 0.39 | 0.31 | 0.4182 | 3.0896 | 0.18 | 122.49 | 86.67% | |
| δ(1H) N | 1.13 | −0.64 | 0.94 | 0.41 | 0.31 | 0.3856 | 2.6661 | 0.16 | 145.83 | 88.50% | |
| δ(13C) O | 0.93 | 13,87 | 0.96 | 5.49 | 4.32 | 6.3579 | 959.879 | 1.94 | 430.88 | 94.69% | |
| δ(13C) S | 1.08 | −4.11 | 0.97 | 5.97 | 3.53 | 5.7831 | 913.886 | 1.89 | 524.12 | 94.94% | |
| δ(13C) N | 0.98 | 6.86 | 0.99 | 4.57 | 2.21 | 3.2676 | 205.189 | 0.89 | 1675.82 | 98.86% | |
| B3LYP/6- 31+G(d,p) | δ(1H) O | 0.86 | 1.00 | 0.96 | 0.31 | 0.25 | 0.2786 | 1.0415 | 0.10 | 222.41 | 94.23% |
| δ(1H) S | 1.18 | −1.02 | 0.92 | 0.46 | 0.35 | 0.5231 | 4.6355 | 0.22 | 118.15 | 86.78% | |
| δ(1H) N | 1.16 | −0.83 | 0.93 | 0.45 | 0.32 | 0.4879 | 3.8216 | 0.19 | 131.42 | 88.65% | |
| δ(13C) O | 0.86 | 14.22 | 0.95 | 5.74 | 5.42 | 6.7773 | 1331.07 | 2.28 | 293.17 | 90.63% | |
| δ(13C) S | 1.00 | −1.92 | 0.95 | 5.32 | 4.70 | 7.4911 | 1304.14 | 2.26 | 324.63 | 93.18% | |
| δ(13C) N | 0.91 | 7.30 | 0.99 | 4.56 | 2.82 | 3.4479 | 260.415 | 1.01 | 1269.99 | 98.30% | |
| δ(1H) FA | 1.02 | −0.12 | 0.95 | 0.26 | 0.24 | 0.3601 | 0.8689 | 0.23 | 71.56 | 91.13% | |
| δ(13C) FA | 0.97 | −0.28 | 0.98 | 4.90 | 3.12 | 4.0927 | 179.844 | 1.68 | 498.65 | 97.88% | |
Figure 2Electrostatic potential surfaces of the O, S and N structures optimized in B3LYP/6-31G(d,p).
Figure 3Correlation between experimental and calculated (B3PW91/DGDZVP) chemical shifts of 13C (a) and 1H (b) for structures O (■), S (□) and N (▴). NMR data of the structures S and N were displaced from 30 to 60 ppm (13C NMR) and from 3 to 6 ppm (1H NMR), respectively. For each set of data the linear fitting is also reported as a dashed line.
Figure 4Correlation between experimental and calculated [B3LYP/6-31+G(d,p)] chemical shifts of 13C (a) and 1H (b) for structures O (■), S (□) and N (▴). NMR data of the structures S and N were displaced from 30 to 60 ppm (13C NMR) and from 3 to 6 ppm (1H NMR), respectively. For each set of data the linear fitting is also reported as a dashed line.
Experimental and theoretical attribution of absorption bands in the IR (in cm−1) calculated at the B3LYP/6-31G(d,p) level for the heterologous series.
| Vibrational Mode (cm−1) | Experimental | Theoretical—B3LYP/6-31G(d,p) | Theoretical—B3LYP/6-31+G(d,p) | ||||
|---|---|---|---|---|---|---|---|
| O structure | S structure | N structure | O structure | S structure | N structure | ||
| 3370 | 3782 | 3808 | 3810 | 3806 | 3633 | 3825 | |
| 3370 | 3818 | 3760 | 3763 | 3822 | 3765 | 3612 | |
| 3370 | - | - | 3612 | - | - | 3612 | |
| 3370 | 3822 | 3822 | 3822 | 3828 | 3828 | 3770 | |
| - | 3128 | 3156 | 3127 | 3130 | 3137 | 3114 | |
| - | 3077 | 3089 | 3076 | 3081 | 3098 | 3094 | |
| - | 3154 | 3157 | 3155 | 3157 | 3159 | 3157 | |
| - | 3207 | 3204 | 3206 | 3207 | 3206 | 3201 | |
| - | 3016 | 3026 | 3025 | 3017 | 3029 | 3027 | |
| 2930 | 3038 | 3018 | 2985 | 3073 | 3075 | 3064 | |
| δa (C-H sp2 aromatic) + | - | 1675 | 1673 | 1673 | 1664 | 1662 | 1662 |
| 1680 | 1794 | 1755 | 1758 | 1768 | 1701 | 1727 | |
| 1600 | 1691 | 1755 | 1685 | 1679 | 1754 | 1674 | |
| δa (CH3) | 1510 | 1505 | 1502 | 1502 | 1509 | 1509 | 1510 |
| δs (C-H sp2 aromatic) + | 1480 | 1307 | 1307 | 1309 | 1311 | 1309 | 1308 |
| δs (C-H sp2) + | 1390 | 1319 | 1316 | 1319 | 1319 | 1327 | 1318 |
| δs (C-H sp2) + δa (CH3) | 1110 | 1225 | 1220 | 1179 | 1220 | 1228 | 1227 |
υ: stretching; υa: asymmetrical stretching; υ: symmetrical stretching; δ: deformation; δa: asymmetrical deformation; δs: symmetrical deformation;
Only for N structure.