Literature DB >> 20405079

Comparison of cationic, anionic and neutral hydrogen bonded dimers.

Han Myoung Lee1, Anupriya Kumar, Maciej Kołaski, Dong Young Kim, Eun Cheol Lee, Seung Kyu Min, Mina Park, Young Cheol Choi, Kwang S Kim.   

Abstract

Short Strong Hydrogen Bonds (SSHBs) play an important role in many fields of physics, chemistry and biology. Since it is known that SSHBs exist in many biological systems, the role of hydrogen bonding motifs has been particularly interesting in enzyme catalysis, bio-metabolism, protein folding and proton transport phenomena. To explore the characteristic features of neutral, anionic and cationic hydrogen bonds, we have carried out theoretical studies of diverse homogeneous and heterogeneous hydrogen bonded dimers including water, peroxides, alcohols, ethers, aldehydes, ketones, carboxylic acids, anhydrides, and nitriles. Geometry optimization and harmonic frequency calculations are performed at the levels of Density Functional Theory (DFT) and Møller-Plesset second order perturbation (MP2) theory. First principles Car-Parrinello molecular dynamics (CPMD) simulations are performed to obtain IR spectra derived from velocity- and dipole-autocorrelation functions. We find that the hydrogen bond energy is roughly inversely proportional to the fourth power of the r(O/N-H) distance. Namely, the polarization of the proton accepting O/N atom by the proton-donating H atom reflects most of the binding energy in these diverse cation/anion/neutral hydrogen bonds. The present study gives deeper insight into the nature of hydrogen-bonded dimers including SSHBs.

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Year:  2010        PMID: 20405079     DOI: 10.1039/b925551f

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  4 in total

1.  Time-dependent density functional theory study on the electronic excited-state hydrogen bonding of the chromophore coumarin 153 in a room-temperature ionic liquid.

Authors:  Dandan Wang; Ce Hao; Se Wang; Hong Dong; Jieshan Qiu
Journal:  J Mol Model       Date:  2011-06-03       Impact factor: 1.810

2.  Determination of noncovalent docking by infrared spectroscopy of cold gas-phase complexes.

Authors:  Etienne Garand; Michael Z Kamrath; Peter A Jordan; Arron B Wolk; Christopher M Leavitt; Anne B McCoy; Scott J Miller; Mark A Johnson
Journal:  Science       Date:  2012-01-19       Impact factor: 47.728

3.  Facile room-temperature self-assembly of extended cation-free guanine-quartet network on Mo-doped Au(111) surface.

Authors:  Amirreza Ghassami; Elham Oleiki; Dong Yeon Kim; Hyung-Joon Shin; Geunsik Lee; Kwang S Kim
Journal:  Nanoscale Adv       Date:  2021-05-20

4.  Anisotropic charge distribution and anisotropic van der Waals radius leading to intriguing anisotropic noncovalent interactions.

Authors:  Hahn Kim; Van Dung Doan; Woo Jong Cho; Miriyala Vijay Madhav; Kwang S Kim
Journal:  Sci Rep       Date:  2014-07-25       Impact factor: 4.379

  4 in total

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