Literature DB >> 22265227

Insulators, long-range interactions, and genome function.

Jingping Yang1, Victor G Corces.   

Abstract

Insulators are DNA-protein complexes that can mediate interactions in cis or trans between different regions of the genome. Although originally defined on the basis of their ability to block enhancer-promoter communication or to serve as barriers against the spreading of heterochromatin in reporter systems, recent information suggests that their function is more nuanced and depends on the nature of the sequences brought together by contacts between specific insulator sites. Here we provide an overview of new evidence that has uncovered a wide range of functions for these sequences in addition to their two classical roles.
Copyright © 2012 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 22265227      PMCID: PMC3337973          DOI: 10.1016/j.gde.2011.12.007

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  29 in total

1.  Identification of cis-acting sites for condensin loading onto budding yeast chromosomes.

Authors:  Claudio D'Ambrosio; Christine Katrin Schmidt; Yuki Katou; Gavin Kelly; Takehiko Itoh; Katsuhiko Shirahige; Frank Uhlmann
Journal:  Genes Dev       Date:  2008-08-15       Impact factor: 11.361

2.  CCCTC-binding factor (CTCF) and cohesin influence the genomic architecture of the Igh locus and antisense transcription in pro-B cells.

Authors:  Stephanie C Degner; Jiyoti Verma-Gaur; Timothy P Wong; Claudia Bossen; G Michael Iverson; Ali Torkamani; Christian Vettermann; Yin C Lin; Zhongliang Ju; Danae Schulz; Caroline S Murre; Barbara K Birshtein; Nicholas J Schork; Mark S Schlissel; Roy Riblet; Cornelis Murre; Ann J Feeney
Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-23       Impact factor: 11.205

3.  Transcription independent insulation at TFIIIC-dependent insulators.

Authors:  Lourdes Valenzuela; Namrita Dhillon; Rohinton T Kamakaka
Journal:  Genetics       Date:  2009-07-13       Impact factor: 4.562

4.  Two forms of loops generate the chromatin conformation of the immunoglobulin heavy-chain gene locus.

Authors:  Changying Guo; Tatiana Gerasimova; Haiping Hao; Irina Ivanova; Tirtha Chakraborty; Roza Selimyan; Eugene M Oltz; Ranjan Sen
Journal:  Cell       Date:  2011-10-06       Impact factor: 41.582

5.  CTCF prevents the epigenetic drift of EBV latency promoter Qp.

Authors:  Italo Tempera; Andreas Wiedmer; Jayaraju Dheekollu; Paul M Lieberman
Journal:  PLoS Pathog       Date:  2010-08-12       Impact factor: 6.823

6.  CTCF physically links cohesin to chromatin.

Authors:  Eric D Rubio; David J Reiss; Piri L Welcsh; Christine M Disteche; Galina N Filippova; Nitin S Baliga; Ruedi Aebersold; Jeffrey A Ranish; Anton Krumm
Journal:  Proc Natl Acad Sci U S A       Date:  2008-06-11       Impact factor: 11.205

7.  CTCF-mediated functional chromatin interactome in pluripotent cells.

Authors:  Lusy Handoko; Han Xu; Guoliang Li; Chew Yee Ngan; Elaine Chew; Marie Schnapp; Charlie Wah Heng Lee; Chaopeng Ye; Joanne Lim Hui Ping; Fabianus Mulawadi; Eleanor Wong; Jianpeng Sheng; Yubo Zhang; Thompson Poh; Chee Seng Chan; Galih Kunarso; Atif Shahab; Guillaume Bourque; Valere Cacheux-Rataboul; Wing-Kin Sung; Yijun Ruan; Chia-Lin Wei
Journal:  Nat Genet       Date:  2011-06-19       Impact factor: 38.330

8.  Genomic binding profiles of functionally distinct RNA polymerase III transcription complexes in human cells.

Authors:  Zarmik Moqtaderi; Jie Wang; Debasish Raha; Robert J White; Michael Snyder; Zhiping Weng; Kevin Struhl
Journal:  Nat Struct Mol Biol       Date:  2010-04-25       Impact factor: 15.369

9.  EBV latency types adopt alternative chromatin conformations.

Authors:  Italo Tempera; Michael Klichinsky; Paul M Lieberman
Journal:  PLoS Pathog       Date:  2011-07-28       Impact factor: 6.823

10.  Genomic binding of Pol III transcription machinery and relationship with TFIIS transcription factor distribution in mouse embryonic stem cells.

Authors:  Lucie Carrière; Sébastien Graziani; Olivier Alibert; Yad Ghavi-Helm; Fayçal Boussouar; Hélène Humbertclaude; Sylvie Jounier; Jean-Christophe Aude; Céline Keime; Janos Murvai; Mario Foglio; Marta Gut; Ivo Gut; Mark Lathrop; Julie Soutourina; Matthieu Gérard; Michel Werner
Journal:  Nucleic Acids Res       Date:  2011-09-12       Impact factor: 16.971

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  38 in total

Review 1.  Something silent this way forms: the functional organization of the repressive nuclear compartment.

Authors:  Joan C Ritland Politz; David Scalzo; Mark Groudine
Journal:  Annu Rev Cell Dev Biol       Date:  2013-07-05       Impact factor: 13.827

Review 2.  Distant activation of transcription: mechanisms of enhancer action.

Authors:  Olga I Kulaeva; Ekaterina V Nizovtseva; Yury S Polikanov; Sergei V Ulianov; Vasily M Studitsky
Journal:  Mol Cell Biol       Date:  2012-10-08       Impact factor: 4.272

Review 3.  Functional sub-division of the Drosophila genome via chromatin looping: the emerging importance of CP190.

Authors:  Sajad H Ahanger; Yogesh S Shouche; Rakesh K Mishra
Journal:  Nucleus       Date:  2013-01-18       Impact factor: 4.197

4.  CpG dinucleotide-specific hypermethylation of the TNS3 gene promoter in human renal cell carcinoma.

Authors:  Jessica A Carter; Dariusz C Górecki; Charles A Mein; Börje Ljungberg; Sassan Hafizi
Journal:  Epigenetics       Date:  2013-05-24       Impact factor: 4.528

Review 5.  Advances in Chromatin Imaging at Kilobase-Scale Resolution.

Authors:  Alistair Boettiger; Sedona Murphy
Journal:  Trends Genet       Date:  2020-01-29       Impact factor: 11.639

6.  Generalized nucleation and looping model for epigenetic memory of histone modifications.

Authors:  Fabian Erdel; Eric C Greene
Journal:  Proc Natl Acad Sci U S A       Date:  2016-07-05       Impact factor: 11.205

7.  The insulator protein Suppressor of Hairy-wing is an essential transcriptional repressor in the Drosophila ovary.

Authors:  Alexey A Soshnev; Ryan M Baxley; J Robert Manak; Kai Tan; Pamela K Geyer
Journal:  Development       Date:  2013-07-24       Impact factor: 6.868

Review 8.  Noncoding RNAs and the borders of heterochromatin.

Authors:  Allison L Cohen; Songtao Jia
Journal:  Wiley Interdiscip Rev RNA       Date:  2014-07-09       Impact factor: 9.957

9.  CENP-B cooperates with Set1 in bidirectional transcriptional silencing and genome organization of retrotransposons.

Authors:  David R Lorenz; Irina V Mikheyeva; Peter Johansen; Lauren Meyer; Anastasia Berg; Shiv I S Grewal; Hugh P Cam
Journal:  Mol Cell Biol       Date:  2012-08-20       Impact factor: 4.272

10.  Gene density, transcription, and insulators contribute to the partition of the Drosophila genome into physical domains.

Authors:  Chunhui Hou; Li Li; Zhaohui S Qin; Victor G Corces
Journal:  Mol Cell       Date:  2012-10-04       Impact factor: 17.970

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