Literature DB >> 22259576

(2E)-2-[(3E)-4-Phenyl-but-3-en-2-yl-idene]hydrazinecarboxamide.

S Samshuddin, Ray J Butcher, Sema Ozturk Yıldırım, Mehmet Akkurt, B Narayana, H S Yathirajan.   

Abstract

In the title compound, C(11)H(13)N(3)O, the phenyl ring is disordered over two sites, with occupancy factors in a 0.520 (17):0.480 (17) ratio. The dihedral angle between the ring planes of the major and minor components of the disordered ring is 12.9 (2)°. In the crystal, mol-ecules are linked by N-H⋯O hydrogen bonds, forming R(2) (2)(8) ring motifs. C-H⋯O, C-H⋯N and C-H⋯π inter-actions also occur.

Entities:  

Year:  2011        PMID: 22259576      PMCID: PMC3254430          DOI: 10.1107/S160053681105255X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the biological activity of semicarbazones, see: Beraldo et al. (2002 ▶); Teixeira et al. (2003 ▶); Du et al. (2004 ▶); Kucukguzel et al. (2006 ▶); Beraldo & Gambino (2004 ▶). For related structures, see: Naik & Palenik (1974 ▶); Wang et al. (2004 ▶); Yathirajan et al. (2006 ▶); Sarojini et al. (2007 ▶).

Experimental

Crystal data

C11H13N3O M = 203.24 Monoclinic, a = 15.1094 (8) Å b = 24.4445 (11) Å c = 7.0368 (4) Å β = 109.908 (6)° V = 2443.7 (2) Å3 Z = 8 Mo Kα radiation μ = 0.07 mm−1 T = 123 K 0.40 × 0.30 × 0.18 mm

Data collection

Oxford Diffraction Xcalibur Ruby Gemini diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2007 ▶) T min = 0.987, T max = 1.000 12712 measured reflections 3528 independent reflections 2748 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.055 wR(F 2) = 0.176 S = 1.05 3528 reflections 168 parameters H-atom parameters constrained Δρmax = 0.26 e Å−3 Δρmin = −0.22 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2007 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis RED (Oxford Diffraction, 2007 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681105255X/tk5032sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681105255X/tk5032Isup2.hkl Supplementary material file. DOI: 10.1107/S160053681105255X/tk5032Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H13N3OF(000) = 864
Mr = 203.24Dx = 1.105 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 5469 reflections
a = 15.1094 (8) Åθ = 3.0–30.9°
b = 24.4445 (11) ŵ = 0.07 mm1
c = 7.0368 (4) ÅT = 123 K
β = 109.908 (6)°Prism, colourless
V = 2443.7 (2) Å30.40 × 0.30 × 0.18 mm
Z = 8
Oxford Diffraction Xcalibur Ruby Gemini diffractometer3528 independent reflections
Radiation source: Enhance (Mo) X-ray Source2748 reflections with I > 2σ(I)
graphiteRint = 0.026
Detector resolution: 10.5081 pixels mm-1θmax = 30.9°, θmin = 3.0°
ω scansh = −20→20
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2007)k = −34→26
Tmin = 0.987, Tmax = 1.000l = −7→9
12712 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.055Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.176H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0981P)2 + 0.6768P] where P = (Fo2 + 2Fc2)/3
3528 reflections(Δ/σ)max < 0.001
168 parametersΔρmax = 0.26 e Å3
0 restraintsΔρmin = −0.22 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
O10.36888 (6)0.23438 (4)1.62948 (12)0.0323 (3)
N10.34428 (7)0.30220 (5)1.17621 (15)0.0337 (3)
N20.31934 (7)0.27704 (4)1.32596 (14)0.0310 (3)
N30.47771 (7)0.26174 (6)1.49376 (16)0.0458 (4)
C1B0.3063 (5)0.40506 (19)0.5724 (7)0.0301 (9)0.520 (17)
C2B0.2428 (5)0.4316 (2)0.4074 (6)0.0354 (10)0.520 (17)
C3B0.2747 (6)0.45824 (19)0.2685 (6)0.0405 (13)0.520 (17)
C4B0.3701 (6)0.45829 (14)0.2947 (8)0.0409 (13)0.520 (17)
C5B0.4336 (6)0.4317 (2)0.4598 (11)0.0469 (14)0.520 (17)
C6B0.4017 (5)0.4051 (2)0.5986 (11)0.0434 (11)0.520 (17)
C70.25908 (11)0.37670 (5)0.71144 (19)0.0393 (4)
C80.31231 (10)0.35103 (5)0.87866 (19)0.0375 (4)
C90.27918 (9)0.32596 (5)1.03065 (18)0.0327 (3)
C100.17796 (10)0.32953 (6)1.0129 (2)0.0395 (4)
C110.38883 (8)0.25686 (5)1.49014 (17)0.0304 (3)
C3A0.2443 (5)0.4630 (2)0.2639 (7)0.0458 (13)0.480 (17)
C4A0.3345 (6)0.45553 (15)0.2576 (7)0.0378 (13)0.480 (17)
C5A0.3972 (6)0.4208 (2)0.3956 (10)0.0408 (14)0.480 (17)
C6A0.3697 (5)0.39363 (19)0.5398 (9)0.0337 (11)0.480 (17)
C2A0.2169 (4)0.4358 (2)0.4081 (7)0.0402 (11)0.480 (17)
C1A0.2795 (4)0.40110 (19)0.5461 (6)0.0276 (10)0.480 (17)
H7A0.194700.379300.699800.0470*
H3BA0.231300.476400.155700.0490*0.520 (17)
H5BA0.498900.431800.477700.0560*0.520 (17)
H6BA0.445100.387000.711500.0520*0.520 (17)
H10A0.173300.333601.147700.0590*
H10B0.145200.296100.949400.0590*
H10C0.148900.361200.929800.0590*
H4BA0.392000.476500.199800.0490*0.520 (17)
H8A0.377900.348900.901000.0450*
H2B0.259800.274101.315700.0370*
H3B0.524400.248901.596900.0550*
H3C0.489400.277801.393000.0550*
H2BA0.177600.431600.389500.0420*0.520 (17)
H2AA0.155200.440900.412400.0480*0.480 (17)
H3AA0.201500.486700.169600.0550*0.480 (17)
H4AA0.353300.474100.159100.0450*0.480 (17)
H5AA0.458800.415700.391300.0490*0.480 (17)
H6AA0.412500.369900.634100.0400*0.480 (17)
U11U22U33U12U13U23
O10.0234 (4)0.0505 (6)0.0224 (4)0.0004 (3)0.0069 (3)0.0096 (3)
N10.0334 (5)0.0409 (6)0.0276 (5)−0.0035 (4)0.0113 (4)0.0100 (4)
N20.0239 (4)0.0438 (6)0.0243 (5)−0.0019 (4)0.0069 (4)0.0107 (4)
N30.0224 (5)0.0857 (10)0.0292 (5)−0.0024 (5)0.0086 (4)0.0155 (5)
C1B0.045 (2)0.0227 (15)0.0208 (13)0.0012 (14)0.0088 (15)0.0032 (10)
C2B0.045 (2)0.0379 (17)0.0259 (14)0.0056 (16)0.0156 (14)0.0043 (11)
C3B0.059 (3)0.0386 (18)0.0276 (14)0.0065 (18)0.0197 (17)0.0131 (11)
C4B0.065 (3)0.0320 (15)0.0343 (18)−0.0086 (16)0.028 (2)0.0002 (13)
C5B0.055 (3)0.0457 (19)0.050 (2)−0.0018 (19)0.031 (2)0.0083 (17)
C6B0.046 (2)0.0458 (19)0.041 (2)0.0010 (18)0.0182 (19)0.0113 (17)
C70.0638 (9)0.0303 (6)0.0298 (6)0.0083 (6)0.0238 (6)0.0061 (5)
C80.0488 (7)0.0349 (6)0.0335 (6)0.0037 (5)0.0202 (6)0.0097 (5)
C90.0389 (6)0.0323 (6)0.0279 (5)0.0005 (5)0.0126 (5)0.0065 (4)
C100.0397 (7)0.0478 (8)0.0320 (6)0.0081 (5)0.0135 (5)0.0127 (5)
C110.0240 (5)0.0424 (7)0.0238 (5)−0.0017 (4)0.0067 (4)0.0040 (4)
C3A0.056 (3)0.044 (2)0.0397 (18)0.0139 (18)0.0194 (18)0.0134 (14)
C4A0.055 (3)0.0314 (17)0.0291 (15)−0.0016 (18)0.017 (2)0.0062 (12)
C5A0.045 (3)0.0402 (19)0.044 (2)0.0033 (16)0.024 (2)0.0081 (16)
C6A0.038 (2)0.0309 (16)0.0338 (19)0.0064 (14)0.0144 (18)0.0112 (13)
C2A0.053 (2)0.0369 (19)0.0353 (17)0.0087 (17)0.0212 (16)0.0099 (13)
C1A0.038 (2)0.0219 (14)0.0268 (15)−0.0032 (14)0.0161 (14)−0.0043 (12)
O1—C111.2472 (15)C5A—C6A1.389 (10)
N1—N21.3788 (15)C5B—C6B1.389 (10)
N1—C91.2915 (17)C7—C81.3344 (18)
N2—C111.3618 (15)C8—C91.4610 (19)
N3—C111.3398 (17)C9—C101.494 (2)
N2—H2B0.8800C2A—H2AA0.9500
N3—H3B0.8800C2B—H2BA0.9500
N3—H3C0.8800C3A—H3AA0.9500
C1A—C71.432 (5)C3B—H3BA0.9500
C1A—C6A1.391 (10)C4A—H4AA0.9500
C1A—C2A1.390 (7)C4B—H4BA0.9500
C1B—C2B1.390 (7)C5A—H5AA0.9500
C1B—C6B1.390 (11)C5B—H5BA0.9500
C1B—C71.556 (6)C6A—H6AA0.9500
C2A—C3A1.389 (8)C6B—H6BA0.9500
C2B—C3B1.390 (9)C7—H7A0.9500
C3A—C4A1.391 (12)C8—H8A0.9500
C3B—C4B1.390 (13)C10—H10B0.9800
C4A—C5A1.391 (9)C10—H10C0.9800
C4B—C5B1.391 (9)C10—H10A0.9800
N2—N1—C9118.31 (11)C3A—C2A—H2AA120.00
N1—N2—C11118.53 (11)C1A—C2A—H2AA120.00
N1—N2—H2B121.00C3B—C2B—H2BA120.00
C11—N2—H2B121.00C1B—C2B—H2BA120.00
C11—N3—H3B120.00C4A—C3A—H3AA120.00
H3B—N3—H3C120.00C2A—C3A—H3AA120.00
C11—N3—H3C120.00C4B—C3B—H3BA120.00
C6A—C1A—C7117.1 (4)C2B—C3B—H3BA120.00
C2A—C1A—C7122.6 (5)C5A—C4A—H4AA120.00
C2A—C1A—C6A119.9 (5)C3A—C4A—H4AA120.00
C2B—C1B—C7113.5 (6)C5B—C4B—H4BA120.00
C2B—C1B—C6B120.0 (6)C3B—C4B—H4BA120.00
C6B—C1B—C7126.4 (5)C4A—C5A—H5AA120.00
C1A—C2A—C3A120.1 (6)C6A—C5A—H5AA120.00
C1B—C2B—C3B120.0 (7)C4B—C5B—H5BA120.00
C2A—C3A—C4A120.0 (5)C6B—C5B—H5BA120.00
C2B—C3B—C4B120.0 (5)C5A—C6A—H6AA120.00
C3A—C4A—C5A120.0 (6)C1A—C6A—H6AA120.00
C3B—C4B—C5B120.0 (6)C5B—C6B—H6BA120.00
C4A—C5A—C6A120.0 (8)C1B—C6B—H6BA120.00
C4B—C5B—C6B120.0 (8)C1A—C7—H7A114.00
C1A—C6A—C5A120.0 (6)C1B—C7—H7A126.00
C1B—C6B—C5B120.0 (6)C8—C7—H7A114.00
C1B—C7—C8119.7 (3)C9—C8—H8A117.00
C1A—C7—C8132.9 (3)C7—C8—H8A117.00
C7—C8—C9126.08 (15)C9—C10—H10C110.00
N1—C9—C8114.27 (13)C9—C10—H10B109.00
C8—C9—C10120.69 (11)H10B—C10—H10C109.00
N1—C9—C10125.04 (12)H10A—C10—H10B110.00
N2—C11—N3117.53 (11)H10A—C10—H10C109.00
O1—C11—N3122.23 (11)C9—C10—H10A110.00
O1—C11—N2120.24 (12)
C9—N1—N2—C11−173.34 (11)C2B—C1B—C7—C8−178.1 (3)
N2—N1—C9—C8−179.53 (10)C6B—C1B—C7—C82.8 (6)
N2—N1—C9—C101.37 (19)C1B—C2B—C3B—C4B0.0 (7)
N1—N2—C11—O1179.22 (11)C2B—C3B—C4B—C5B0.0 (7)
N1—N2—C11—N3−1.40 (17)C3B—C4B—C5B—C6B0.0 (8)
C6B—C1B—C2B—C3B0.0 (7)C4B—C5B—C6B—C1B0.0 (8)
C7—C1B—C2B—C3B−179.2 (4)C1B—C7—C8—C9175.5 (2)
C2B—C1B—C6B—C5B0.0 (8)C7—C8—C9—N1178.13 (13)
C7—C1B—C6B—C5B179.1 (4)C7—C8—C9—C10−2.7 (2)
Cg1 and Cg2 are the centroids of the disordered benzene rings C1A –C6A and C1B–C6B, respectively.
D—H···AD—HH···AD···AD—H···A
N2—H2B···O1i0.882.122.9785 (15)166
N3—H3B···O1ii0.882.082.9434 (14)168
N3—H3C···N10.882.282.6397 (16)104
C10—H10A···O1i0.982.513.2384 (17)131
C10—H10B···N1iii0.982.583.4566 (19)148
C4B—H4BA···Cg1iv0.952.863.618 (5)138
C4A—H4AA···Cg1iv0.952.763.590 (5)146
C4A—H4AA···Cg2iv0.952.933.714 (5)141
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 and Cg2 are the centroids of the disordered benzene rings C1A –C6A and C1B–C6B, respectively.

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2B⋯O1i0.882.122.9785 (15)166
N3—H3B⋯O1ii0.882.082.9434 (14)168
C10—H10A⋯O1i0.982.513.2384 (17)131
C10—H10B⋯N1iii0.982.583.4566 (19)148
C4B—H4BACg1iv0.952.863.618 (5)138
C4A—H4AACg1iv0.952.763.590 (5)146
C4A—H4AACg2iv0.952.933.714 (5)141

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  5 in total

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Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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4.  An effective anticonvulsant prepared following a host-guest strategy that uses hydroxypropyl-beta-cyclodextrin and benzaldehyde semicarbazone.

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Journal:  Biochem Biophys Res Commun       Date:  2002-08-16       Impact factor: 3.575

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total

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