Literature DB >> 22259568

2,2'-[2,4-Bis(naphthalen-1-yl)cyclo-butane-1,3-di-yl]bis-(1-methyl-pyridinium) diiodide: thermal-induced [2 + 2] cyclo-addition reaction of a heterostilbene.

Suchada Chantrapromma, Kullapa Chanawanno, Nawong Boonnak, Hoong-Kun Fun.   

Abstract

The asymmetric unit of the title compound, C(36)H(32)N(2) (2+)·2I(-), consists of one half-mol-ecule of the cation and one I(-) anion. The cation is located on an inversion centre. The dihedral angle between the pyridinium ring and the naphthalene ring system in the asymmetric unit is 19.01 (14)°. In the crystal, the cations and the anions are linked by C-H⋯I inter-actions into a layer parallel to the bc plane. Intra- and inter-molecular π-π inter-actions with centroid-centroid distances of 3.533 (2)-3.807 (2) Å are also observed.

Entities:  

Year:  2011        PMID: 22259568      PMCID: PMC3254423          DOI: 10.1107/S1600536811052433

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For bond-length data, see: Allen et al. (1987 ▶). For background to stilbene and [2 + 2] photodimerization, see: Chanawanno et al. (2010 ▶); Papaefstathiou et al. (2002 ▶); Ruanwas et al. (2010 ▶); Yayli et al. (2004 ▶). For related structures, see: Fun, Chanawanno & Chantrapromma (2009 ▶); Fun, Surasit et al. (2009 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C36H32N2 2+·2I− M = 746.44 Monoclinic, a = 7.0061 (1) Å b = 20.7920 (4) Å c = 10.8956 (2) Å β = 106.063 (1)° V = 1525.21 (5) Å3 Z = 2 Mo Kα radiation μ = 2.09 mm−1 T = 100 K 0.15 × 0.13 × 0.08 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.749, T max = 0.854 18762 measured reflections 4449 independent reflections 3475 reflections with I > 2σ(I) R int = 0.050

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.080 S = 1.09 4449 reflections 190 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 1.92 e Å−3 Δρmin = −0.86 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811052433/is5025sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811052433/is5025Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811052433/is5025Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C36H32N22+·2IF(000) = 736
Mr = 746.44Dx = 1.625 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4449 reflections
a = 7.0061 (1) Åθ = 2.2–30.0°
b = 20.7920 (4) ŵ = 2.09 mm1
c = 10.8956 (2) ÅT = 100 K
β = 106.063 (1)°Block, yellow
V = 1525.21 (5) Å30.15 × 0.13 × 0.08 mm
Z = 2
Bruker APEXII CCD area-detector diffractometer4449 independent reflections
Radiation source: sealed tube3475 reflections with I > 2σ(I)
graphiteRint = 0.050
φ and ω scansθmax = 30.0°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −9→9
Tmin = 0.749, Tmax = 0.854k = −22→29
18762 measured reflectionsl = −15→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.080H atoms treated by a mixture of independent and constrained refinement
S = 1.09w = 1/[σ2(Fo2) + (0.0278P)2 + 1.442P] where P = (Fo2 + 2Fc2)/3
4449 reflections(Δ/σ)max = 0.001
190 parametersΔρmax = 1.92 e Å3
0 restraintsΔρmin = −0.86 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
I10.51619 (4)0.361747 (10)0.802649 (19)0.02498 (7)
N10.5483 (4)0.35243 (12)0.3555 (2)0.0160 (5)
C10.0993 (5)0.40695 (16)0.3501 (3)0.0195 (6)
C20.1492 (5)0.35697 (16)0.4416 (3)0.0235 (7)
H2A0.22120.36640.52500.028*
C30.0915 (5)0.29415 (17)0.4080 (4)0.0291 (8)
H3A0.12330.26180.46920.035*
C4−0.0154 (5)0.27911 (19)0.2811 (4)0.0347 (9)
H4A−0.04770.23660.25760.042*
C5−0.0712 (5)0.3272 (2)0.1930 (4)0.0313 (9)
H5A−0.14450.31700.11030.038*
C6−0.0201 (5)0.39223 (18)0.2246 (3)0.0241 (8)
C7−0.0847 (5)0.44256 (19)0.1352 (3)0.0276 (8)
H7A−0.16240.43310.05320.033*
C8−0.0340 (5)0.50453 (19)0.1684 (3)0.0281 (8)
H8A−0.08600.53750.11130.034*
C90.0972 (5)0.51915 (17)0.2890 (3)0.0226 (7)
H9A0.13470.56170.30860.027*
C100.1710 (5)0.47208 (15)0.3781 (3)0.0182 (6)
C110.3468 (5)0.48207 (15)0.4937 (3)0.0168 (6)
C120.5522 (5)0.45067 (14)0.4853 (3)0.0145 (6)
C130.5385 (4)0.41782 (15)0.3610 (3)0.0153 (6)
C140.4890 (5)0.45169 (15)0.2464 (3)0.0174 (6)
H14A0.48890.49640.24740.021*
C150.4397 (5)0.41930 (16)0.1308 (3)0.0203 (7)
H15A0.40980.44220.05450.024*
C160.4353 (5)0.35306 (16)0.1291 (3)0.0229 (7)
H16A0.39340.33080.05230.027*
C170.4939 (5)0.32046 (16)0.2430 (3)0.0215 (7)
H17A0.49610.27570.24270.026*
C180.6237 (5)0.31341 (15)0.4735 (3)0.0203 (7)
H18A0.75860.32530.51490.030*
H18B0.61820.26860.45150.030*
H18C0.54300.32110.53030.030*
H110.305 (5)0.4670 (18)0.574 (3)0.026 (10)*
H120.610 (5)0.4215 (17)0.560 (3)0.019 (9)*
U11U22U33U12U13U23
I10.04756 (15)0.01318 (10)0.01593 (10)−0.00056 (11)0.01167 (8)0.00136 (9)
N10.0222 (13)0.0125 (13)0.0156 (12)0.0010 (11)0.0089 (10)0.0007 (10)
C10.0145 (15)0.0240 (17)0.0214 (16)−0.0010 (13)0.0071 (12)−0.0014 (13)
C20.0201 (16)0.0197 (16)0.0315 (18)−0.0017 (14)0.0082 (13)−0.0016 (14)
C30.0250 (19)0.0199 (17)0.044 (2)−0.0014 (15)0.0115 (16)0.0018 (15)
C40.027 (2)0.0250 (19)0.051 (3)−0.0103 (16)0.0085 (18)−0.0148 (17)
C50.0227 (18)0.036 (2)0.034 (2)−0.0104 (16)0.0056 (16)−0.0149 (17)
C60.0143 (15)0.0321 (19)0.0263 (19)−0.0038 (14)0.0065 (14)−0.0053 (14)
C70.0197 (17)0.042 (2)0.0186 (17)−0.0033 (16)0.0007 (13)−0.0016 (15)
C80.0182 (17)0.036 (2)0.0262 (18)−0.0011 (15)−0.0005 (14)0.0061 (15)
C90.0202 (16)0.0238 (17)0.0238 (17)0.0014 (14)0.0059 (13)0.0006 (13)
C100.0198 (16)0.0185 (15)0.0176 (15)−0.0016 (13)0.0075 (12)−0.0048 (12)
C110.0186 (15)0.0155 (14)0.0165 (14)0.0007 (12)0.0053 (12)−0.0011 (11)
C120.0182 (15)0.0132 (14)0.0131 (14)0.0001 (12)0.0061 (11)−0.0011 (11)
C130.0190 (15)0.0127 (14)0.0151 (14)0.0009 (12)0.0061 (11)−0.0017 (12)
C140.0206 (16)0.0144 (15)0.0184 (14)−0.0002 (12)0.0073 (12)0.0019 (12)
C150.0220 (16)0.0226 (16)0.0170 (15)0.0006 (14)0.0068 (12)0.0028 (13)
C160.0292 (18)0.0215 (18)0.0185 (15)−0.0012 (14)0.0075 (13)−0.0028 (13)
C170.0326 (19)0.0131 (15)0.0206 (15)−0.0014 (14)0.0104 (14)−0.0053 (12)
C180.0285 (18)0.0146 (15)0.0179 (15)0.0034 (13)0.0069 (13)0.0037 (12)
N1—C171.354 (4)C9—H9A0.9300
N1—C131.363 (4)C10—C111.513 (4)
N1—C181.488 (4)C11—C12i1.555 (4)
C1—C21.415 (5)C11—C121.606 (4)
C1—C61.424 (4)C11—H111.05 (4)
C1—C101.447 (4)C12—C131.496 (4)
C2—C31.386 (5)C12—C11i1.555 (4)
C2—H2A0.9300C12—H121.01 (3)
C3—C41.413 (5)C13—C141.392 (4)
C3—H3A0.9300C14—C151.385 (4)
C4—C51.365 (6)C14—H14A0.9300
C4—H4A0.9300C15—C161.377 (5)
C5—C61.417 (5)C15—H15A0.9300
C5—H5A0.9300C16—C171.373 (5)
C6—C71.416 (5)C16—H16A0.9300
C7—C81.359 (5)C17—H17A0.9300
C7—H7A0.9300C18—H18A0.9600
C8—C91.413 (5)C18—H18B0.9600
C8—H8A0.9300C18—H18C0.9600
C9—C101.375 (4)
C17—N1—C13121.6 (3)C10—C11—C12i118.6 (3)
C17—N1—C18117.3 (3)C10—C11—C12115.6 (2)
C13—N1—C18121.1 (3)C12i—C11—C1289.7 (2)
C2—C1—C6118.9 (3)C10—C11—H11108 (2)
C2—C1—C10122.3 (3)C12i—C11—H11112 (2)
C6—C1—C10118.7 (3)C12—C11—H11113 (2)
C3—C2—C1120.6 (3)C13—C12—C11i117.1 (3)
C3—C2—H2A119.7C13—C12—C11113.8 (2)
C1—C2—H2A119.7C11i—C12—C1190.3 (2)
C2—C3—C4120.2 (4)C13—C12—H12111.6 (19)
C2—C3—H3A119.9C11i—C12—H12111 (2)
C4—C3—H3A119.9C11—C12—H12111.4 (19)
C5—C4—C3119.8 (3)N1—C13—C14117.9 (3)
C5—C4—H4A120.1N1—C13—C12120.3 (3)
C3—C4—H4A120.1C14—C13—C12121.3 (3)
C4—C5—C6121.6 (3)C15—C14—C13120.5 (3)
C4—C5—H5A119.2C15—C14—H14A119.8
C6—C5—H5A119.2C13—C14—H14A119.8
C7—C6—C5121.8 (3)C16—C15—C14119.8 (3)
C7—C6—C1119.5 (3)C16—C15—H15A120.1
C5—C6—C1118.7 (3)C14—C15—H15A120.1
C8—C7—C6120.5 (3)C17—C16—C15118.8 (3)
C8—C7—H7A119.8C17—C16—H16A120.6
C6—C7—H7A119.8C15—C16—H16A120.6
C7—C8—C9120.4 (3)N1—C17—C16121.0 (3)
C7—C8—H8A119.8N1—C17—H17A119.5
C9—C8—H8A119.8C16—C17—H17A119.5
C10—C9—C8121.6 (3)N1—C18—H18A109.5
C10—C9—H9A119.2N1—C18—H18B109.5
C8—C9—H9A119.2H18A—C18—H18B109.5
C9—C10—C1118.4 (3)N1—C18—H18C109.5
C9—C10—C11123.4 (3)H18A—C18—H18C109.5
C1—C10—C11117.3 (3)H18B—C18—H18C109.5
C6—C1—C2—C33.3 (5)C1—C10—C11—C12i170.7 (3)
C10—C1—C2—C3−174.5 (3)C9—C10—C11—C12−103.7 (4)
C1—C2—C3—C41.0 (5)C1—C10—C11—C1265.9 (4)
C2—C3—C4—C5−3.5 (6)C10—C11—C12—C131.8 (4)
C3—C4—C5—C61.6 (6)C12i—C11—C12—C13−120.0 (3)
C4—C5—C6—C7−177.3 (3)C10—C11—C12—C11i121.9 (3)
C4—C5—C6—C12.6 (5)C12i—C11—C12—C11i0.0
C2—C1—C6—C7174.9 (3)C17—N1—C13—C14−6.2 (4)
C10—C1—C6—C7−7.3 (5)C18—N1—C13—C14172.5 (3)
C2—C1—C6—C5−5.0 (5)C17—N1—C13—C12165.3 (3)
C10—C1—C6—C5172.8 (3)C18—N1—C13—C12−16.0 (4)
C5—C6—C7—C8179.8 (3)C11i—C12—C13—N1147.3 (3)
C1—C6—C7—C8−0.1 (5)C11—C12—C13—N1−109.3 (3)
C6—C7—C8—C95.2 (5)C11i—C12—C13—C14−41.5 (4)
C7—C8—C9—C10−2.7 (5)C11—C12—C13—C1461.9 (4)
C8—C9—C10—C1−4.8 (5)N1—C13—C14—C153.8 (5)
C8—C9—C10—C11164.7 (3)C12—C13—C14—C15−167.6 (3)
C2—C1—C10—C9−172.6 (3)C13—C14—C15—C161.5 (5)
C6—C1—C10—C99.6 (5)C14—C15—C16—C17−4.6 (5)
C2—C1—C10—C1117.3 (4)C13—N1—C17—C163.1 (5)
C6—C1—C10—C11−160.5 (3)C18—N1—C17—C16−175.6 (3)
C9—C10—C11—C12i1.1 (5)C15—C16—C17—N12.4 (5)
D—H···AD—HH···AD···AD—H···A
C14—H14A···I1i0.933.003.915 (3)169
C17—H17A···I1ii0.932.933.840 (3)167
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C14—H14A⋯I1i0.933.003.915 (3)169
C17—H17A⋯I1ii0.932.933.840 (3)167

Symmetry codes: (i) ; (ii) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis, structure and in vitro antibacterial activities of new hybrid disinfectants quaternary ammonium compounds: pyridinium and quinolinium stilbene benzenesulfonates.

Authors:  Kullapa Chanawanno; Suchada Chantrapromma; Theerasak Anantapong; Akkharawit Kanjana-Opas; Hoong-Kun Fun
Journal:  Eur J Med Chem       Date:  2010-06-17       Impact factor: 6.514

3.  1,1'-Dimethyl-4,4'-(2,4-di-1-naphthyl-cyclo-butane-1,3-di-yl)dipyridinium-(E)-1-methyl-4-[2-(1-naphth-yl)vin-yl]pyridinium-4-amino-benzene-sulfonate-water (0.25/1.50/2/2).

Authors:  Hoong-Kun Fun; Kullapa Chanawanno; Suchada Chantrapromma
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-31

4.  1,1'-Dimethyl-4,4'-[(2,4-diphenyl-cyclo-butane-1,3-di-yl)dipyridinium-(E)-1-methyl-4-styrylpyridinium-benzene-sulfonate (0.15/1.70/2).

Authors:  Hoong-Kun Fun; Chanasuk Surasit; Kullapa Chanawanno; Suchada Chantrapromma
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-09-05

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total
  1 in total

1.  2,2'-[2,4-Bis(naphthalen-1-yl)cyclo-butane-1,3-di-yl]bis-(1-methyl-pyridinium) bis-(4-chloro-benzene-sulfonate): thermal-induced [2 + 2] cyclo-addition reaction of a heterostilbene.

Authors:  Suchada Chantrapromma; Kullapa Chanawanno; Nawong Boonnak; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-04-02
  1 in total

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