Literature DB >> 22259541

9-(7-Fluoro-4-oxo-4H-chromen-3-yl)-3,3,6,6-tetra-methyl-2,3,4,5,6,7,8,9-octa-hydro-1H-xanthene-1,8-dione.

Mohammad Asad, Chuan-Wei Oo, Hasnah Osman, Hoong-Kun Fun, Suhana Arshad.   

Abstract

In the title compound, C(26)H(25)FO(5), the terminal cyclo-hexane rings of the xanthene ring system adopt half-boat conformations. The 4H-chromene ring make a dihedral angle of 87.94 (5)° with the xanthene ring system and its carbonyl O atom lies above the xanthene O atom. In the crystal, mol-ecules are linked into ribbons propagating along the a-axis direction by C-H⋯O hydrogen bonds. Aromatic π-π stacking inter-actions [centroid-centroid distance = 3.7367 (12) Å] also occur.

Entities:  

Year:  2011        PMID: 22259541      PMCID: PMC3254399          DOI: 10.1107/S1600536811051749

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a related structure and background to the properties and applications of xanthene derivatives, see: Mehdi et al. (2011 ▶). For ring conformations, see: Cremer & Pople (1975 ▶). For reference bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C26H25FO5 M = 436.46 Monoclinic, a = 6.9475 (8) Å b = 18.596 (2) Å c = 17.559 (2) Å β = 93.658 (2)° V = 2264.0 (5) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 296 K 0.51 × 0.38 × 0.24 mm

Data collection

Bruker SMART APEXII DUO CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.954, T max = 0.978 21143 measured reflections 6574 independent reflections 4315 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.052 wR(F 2) = 0.150 S = 1.03 6574 reflections 293 parameters H-atom parameters constrained Δρmax = 0.24 e Å−3 Δρmin = −0.22 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811051749/hb6535sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811051749/hb6535Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811051749/hb6535Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C26H25FO5F(000) = 920
Mr = 436.46Dx = 1.281 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5340 reflections
a = 6.9475 (8) Åθ = 2.5–29.3°
b = 18.596 (2) ŵ = 0.09 mm1
c = 17.559 (2) ÅT = 296 K
β = 93.658 (2)°Block, colourless
V = 2264.0 (5) Å30.51 × 0.38 × 0.24 mm
Z = 4
Bruker SMART APEXII DUO CCD diffractometer6574 independent reflections
Radiation source: fine-focus sealed tube4315 reflections with I > 2σ(I)
graphiteRint = 0.034
φ and ω scansθmax = 30.0°, θmin = 1.6°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −9→9
Tmin = 0.954, Tmax = 0.978k = −24→26
21143 measured reflectionsl = −24→24
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.052Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.150H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0621P)2 + 0.5163P] where P = (Fo2 + 2Fc2)/3
6574 reflections(Δ/σ)max = 0.001
293 parametersΔρmax = 0.24 e Å3
0 restraintsΔρmin = −0.22 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
F10.0382 (3)0.36000 (10)1.08974 (8)0.1100 (6)
O1−0.25037 (17)0.46251 (7)0.86767 (7)0.0562 (3)
O20.29558 (13)0.54942 (6)0.61824 (6)0.0400 (2)
O30.26966 (16)0.48699 (8)0.77520 (7)0.0599 (4)
O4−0.21687 (16)0.66244 (8)0.73490 (8)0.0624 (4)
O5−0.25611 (16)0.40218 (7)0.62320 (8)0.0626 (4)
C1−0.2364 (2)0.48941 (9)0.79629 (10)0.0467 (4)
H1A−0.35020.50280.76920.056*
C2−0.0864 (3)0.43986 (9)0.90721 (10)0.0491 (4)
C3−0.1071 (3)0.41034 (11)0.97924 (11)0.0654 (5)
H3A−0.22780.40600.99880.079*
C40.0547 (4)0.38826 (12)1.01969 (12)0.0713 (6)
C50.2370 (4)0.39369 (13)0.99353 (12)0.0735 (6)
H5A0.34470.37831.02330.088*
C60.2552 (3)0.42249 (11)0.92207 (11)0.0612 (5)
H6A0.37680.42600.90310.073*
C70.0939 (2)0.44652 (9)0.87767 (9)0.0462 (4)
C80.1115 (2)0.47825 (9)0.80182 (9)0.0438 (4)
C9−0.0704 (2)0.49818 (9)0.76172 (9)0.0402 (3)
C10−0.07496 (19)0.52939 (8)0.68162 (8)0.0384 (3)
H10A−0.20970.53820.66420.046*
C110.03248 (19)0.59992 (8)0.68064 (8)0.0379 (3)
C12−0.0564 (2)0.66493 (9)0.71072 (9)0.0444 (4)
C130.0533 (2)0.73440 (10)0.70679 (12)0.0560 (4)
H13A0.01270.76640.74640.067*
H13B0.02030.75710.65790.067*
C140.2729 (2)0.72520 (9)0.71637 (10)0.0455 (4)
C150.3311 (2)0.67069 (9)0.65689 (9)0.0426 (3)
H15A0.32340.69340.60710.051*
H15B0.46420.65660.66850.051*
C160.20817 (19)0.60537 (8)0.65378 (8)0.0368 (3)
C170.18772 (19)0.48912 (8)0.60097 (8)0.0354 (3)
C180.2912 (2)0.43901 (8)0.55154 (9)0.0406 (3)
H18A0.42750.43930.56740.049*
H18B0.27730.45580.49920.049*
C190.2145 (2)0.36198 (9)0.55528 (9)0.0423 (3)
C20−0.0053 (2)0.36473 (9)0.54550 (10)0.0474 (4)
H20A−0.04280.38030.49400.057*
H20B−0.05570.31660.55170.057*
C21−0.0958 (2)0.41424 (9)0.60100 (9)0.0420 (3)
C220.01150 (19)0.47845 (8)0.62625 (8)0.0367 (3)
C230.3742 (3)0.79644 (10)0.70260 (13)0.0630 (5)
H23A0.33810.81320.65200.094*
H23B0.51130.78950.70800.094*
H23C0.33690.83130.73920.094*
C240.3312 (3)0.69813 (11)0.79693 (10)0.0565 (5)
H24A0.46850.69160.80220.085*
H24B0.26840.65310.80540.085*
H24C0.29340.73270.83370.085*
C250.2778 (3)0.32836 (10)0.63219 (11)0.0555 (4)
H25A0.22590.28060.63480.083*
H25B0.23130.35710.67260.083*
H25C0.41610.32620.63750.083*
C260.2962 (3)0.31780 (11)0.49147 (12)0.0645 (5)
H26A0.24580.26980.49250.097*
H26B0.43430.31630.49870.097*
H26C0.26000.33960.44310.097*
U11U22U33U12U13U23
F10.1401 (15)0.1261 (13)0.0658 (8)0.0020 (11)0.0231 (9)0.0400 (8)
O10.0411 (6)0.0750 (8)0.0545 (7)−0.0079 (6)0.0193 (5)0.0016 (6)
O20.0267 (5)0.0454 (6)0.0489 (6)−0.0015 (4)0.0099 (4)−0.0043 (5)
O30.0291 (5)0.0953 (10)0.0562 (7)0.0035 (6)0.0084 (5)0.0158 (7)
O40.0302 (6)0.0743 (9)0.0838 (9)0.0068 (5)0.0124 (6)−0.0161 (7)
O50.0307 (6)0.0703 (9)0.0874 (10)−0.0117 (5)0.0089 (6)−0.0105 (7)
C10.0328 (7)0.0583 (10)0.0502 (9)−0.0036 (7)0.0112 (6)−0.0029 (7)
C20.0518 (9)0.0494 (9)0.0476 (9)−0.0067 (7)0.0141 (7)−0.0031 (7)
C30.0758 (13)0.0663 (13)0.0569 (11)−0.0111 (10)0.0256 (10)0.0029 (9)
C40.0988 (17)0.0660 (13)0.0505 (11)−0.0014 (12)0.0167 (11)0.0118 (9)
C50.0844 (15)0.0763 (15)0.0595 (12)0.0116 (12)0.0021 (11)0.0148 (10)
C60.0567 (11)0.0704 (13)0.0569 (11)0.0086 (9)0.0069 (8)0.0093 (9)
C70.0450 (8)0.0495 (9)0.0449 (8)−0.0012 (7)0.0085 (7)−0.0006 (7)
C80.0337 (7)0.0547 (9)0.0437 (8)0.0001 (6)0.0067 (6)0.0002 (7)
C90.0281 (6)0.0493 (9)0.0441 (8)−0.0018 (6)0.0086 (6)−0.0037 (7)
C100.0198 (6)0.0507 (9)0.0448 (8)0.0012 (5)0.0042 (5)−0.0020 (6)
C110.0256 (6)0.0478 (8)0.0403 (7)0.0026 (6)0.0022 (5)−0.0018 (6)
C120.0278 (7)0.0563 (10)0.0487 (9)0.0072 (6)−0.0007 (6)−0.0057 (7)
C130.0418 (9)0.0516 (10)0.0745 (12)0.0079 (7)0.0023 (8)−0.0099 (9)
C140.0379 (8)0.0469 (9)0.0517 (9)−0.0029 (6)0.0044 (6)−0.0069 (7)
C150.0324 (7)0.0503 (9)0.0456 (8)−0.0048 (6)0.0070 (6)−0.0011 (7)
C160.0278 (6)0.0450 (8)0.0377 (7)0.0022 (6)0.0028 (5)−0.0009 (6)
C170.0280 (6)0.0414 (8)0.0367 (7)0.0003 (5)0.0019 (5)0.0020 (6)
C180.0342 (7)0.0466 (8)0.0418 (8)0.0029 (6)0.0088 (6)0.0014 (6)
C190.0376 (7)0.0465 (9)0.0430 (8)0.0029 (6)0.0054 (6)0.0001 (7)
C200.0415 (8)0.0520 (10)0.0479 (9)−0.0032 (7)−0.0034 (7)−0.0050 (7)
C210.0281 (7)0.0509 (9)0.0461 (8)0.0004 (6)−0.0031 (6)0.0030 (7)
C220.0250 (6)0.0462 (8)0.0388 (7)0.0018 (5)0.0009 (5)0.0010 (6)
C230.0614 (12)0.0505 (11)0.0772 (13)−0.0082 (8)0.0057 (10)−0.0060 (9)
C240.0476 (10)0.0734 (12)0.0486 (9)−0.0106 (8)0.0038 (7)−0.0075 (9)
C250.0487 (9)0.0567 (11)0.0611 (11)0.0096 (8)0.0034 (8)0.0174 (9)
C260.0683 (12)0.0607 (12)0.0662 (12)0.0054 (9)0.0177 (10)−0.0122 (9)
F1—C41.349 (2)C14—C231.527 (2)
O1—C11.359 (2)C14—C151.528 (2)
O1—C21.363 (2)C14—C241.532 (2)
O2—C171.3719 (18)C15—C161.484 (2)
O2—C161.3744 (17)C15—H15A0.9700
O3—C81.2317 (18)C15—H15B0.9700
O4—C121.2192 (18)C17—C221.3433 (18)
O5—C211.2243 (18)C17—C181.489 (2)
C1—C91.3470 (19)C18—C191.531 (2)
C1—H1A0.9300C18—H18A0.9700
C2—C71.391 (2)C18—H18B0.9700
C2—C31.395 (3)C19—C201.526 (2)
C3—C41.354 (3)C19—C251.527 (2)
C3—H3A0.9300C19—C261.528 (2)
C4—C51.378 (3)C20—C211.507 (2)
C5—C61.378 (3)C20—H20A0.9700
C5—H5A0.9300C20—H20B0.9700
C6—C71.397 (3)C21—C221.461 (2)
C6—H6A0.9300C23—H23A0.9600
C7—C81.469 (2)C23—H23B0.9600
C8—C91.455 (2)C23—H23C0.9600
C9—C101.520 (2)C24—H24A0.9600
C10—C221.509 (2)C24—H24B0.9600
C10—C111.510 (2)C24—H24C0.9600
C10—H10A0.9800C25—H25A0.9600
C11—C161.3402 (18)C25—H25B0.9600
C11—C121.471 (2)C25—H25C0.9600
C12—C131.503 (3)C26—H26A0.9600
C13—C141.534 (2)C26—H26B0.9600
C13—H13A0.9700C26—H26C0.9600
C13—H13B0.9700
C1—O1—C2118.51 (12)C14—C15—H15B109.0
C17—O2—C16117.92 (10)H15A—C15—H15B107.8
C9—C1—O1125.01 (16)C11—C16—O2122.77 (14)
C9—C1—H1A117.5C11—C16—C15125.73 (14)
O1—C1—H1A117.5O2—C16—C15111.49 (11)
O1—C2—C7121.73 (15)C22—C17—O2122.97 (13)
O1—C2—C3116.91 (16)C22—C17—C18125.75 (14)
C7—C2—C3121.36 (18)O2—C17—C18111.29 (11)
C4—C3—C2117.71 (19)C17—C18—C19112.21 (12)
C4—C3—H3A121.1C17—C18—H18A109.2
C2—C3—H3A121.1C19—C18—H18A109.2
F1—C4—C3118.7 (2)C17—C18—H18B109.2
F1—C4—C5117.8 (2)C19—C18—H18B109.2
C3—C4—C5123.53 (19)H18A—C18—H18B107.9
C6—C5—C4118.2 (2)C20—C19—C25110.06 (13)
C6—C5—H5A120.9C20—C19—C26110.59 (15)
C4—C5—H5A120.9C25—C19—C26109.19 (15)
C5—C6—C7121.02 (19)C20—C19—C18108.20 (13)
C5—C6—H6A119.5C25—C19—C18109.84 (14)
C7—C6—H6A119.5C26—C19—C18108.95 (13)
C2—C7—C6118.21 (16)C21—C20—C19113.78 (13)
C2—C7—C8120.19 (15)C21—C20—H20A108.8
C6—C7—C8121.60 (15)C19—C20—H20A108.8
O3—C8—C9123.44 (15)C21—C20—H20B108.8
O3—C8—C7121.67 (15)C19—C20—H20B108.8
C9—C8—C7114.89 (13)H20A—C20—H20B107.7
C1—C9—C8119.57 (15)O5—C21—C22120.65 (14)
C1—C9—C10119.69 (14)O5—C21—C20121.30 (15)
C8—C9—C10120.73 (12)C22—C21—C20118.03 (13)
C22—C10—C11108.70 (11)C17—C22—C21118.57 (13)
C22—C10—C9111.76 (13)C17—C22—C10121.92 (13)
C11—C10—C9111.17 (13)C21—C22—C10119.48 (12)
C22—C10—H10A108.4C14—C23—H23A109.5
C11—C10—H10A108.4C14—C23—H23B109.5
C9—C10—H10A108.4H23A—C23—H23B109.5
C16—C11—C12118.48 (14)C14—C23—H23C109.5
C16—C11—C10122.12 (13)H23A—C23—H23C109.5
C12—C11—C10119.40 (12)H23B—C23—H23C109.5
O4—C12—C11120.52 (15)C14—C24—H24A109.5
O4—C12—C13121.74 (15)C14—C24—H24B109.5
C11—C12—C13117.66 (13)H24A—C24—H24B109.5
C12—C13—C14113.74 (14)C14—C24—H24C109.5
C12—C13—H13A108.8H24A—C24—H24C109.5
C14—C13—H13A108.8H24B—C24—H24C109.5
C12—C13—H13B108.8C19—C25—H25A109.5
C14—C13—H13B108.8C19—C25—H25B109.5
H13A—C13—H13B107.7H25A—C25—H25B109.5
C23—C14—C15108.81 (14)C19—C25—H25C109.5
C23—C14—C24109.51 (15)H25A—C25—H25C109.5
C15—C14—C24110.32 (14)H25B—C25—H25C109.5
C23—C14—C13110.57 (15)C19—C26—H26A109.5
C15—C14—C13107.69 (13)C19—C26—H26B109.5
C24—C14—C13109.92 (14)H26A—C26—H26B109.5
C16—C15—C14113.03 (12)C19—C26—H26C109.5
C16—C15—H15A109.0H26A—C26—H26C109.5
C14—C15—H15A109.0H26B—C26—H26C109.5
C16—C15—H15B109.0
C2—O1—C1—C9−2.6 (3)C11—C12—C13—C14−33.4 (2)
C1—O1—C2—C72.8 (2)C12—C13—C14—C23173.48 (16)
C1—O1—C2—C3−177.91 (16)C12—C13—C14—C1554.7 (2)
O1—C2—C3—C4−179.30 (18)C12—C13—C14—C24−65.50 (19)
C7—C2—C3—C40.0 (3)C23—C14—C15—C16−166.89 (15)
C2—C3—C4—F1179.54 (19)C24—C14—C15—C1672.95 (17)
C2—C3—C4—C50.2 (3)C13—C14—C15—C16−47.01 (19)
F1—C4—C5—C6−180.0 (2)C12—C11—C16—O2−173.90 (13)
C3—C4—C5—C6−0.7 (4)C10—C11—C16—O26.7 (2)
C4—C5—C6—C70.9 (3)C12—C11—C16—C155.1 (2)
O1—C2—C7—C6179.51 (17)C10—C11—C16—C15−174.23 (14)
C3—C2—C7—C60.3 (3)C17—O2—C16—C118.7 (2)
O1—C2—C7—C8−0.4 (3)C17—O2—C16—C15−170.42 (12)
C3—C2—C7—C8−179.60 (17)C14—C15—C16—C1119.2 (2)
C5—C6—C7—C2−0.7 (3)C14—C15—C16—O2−161.68 (13)
C5—C6—C7—C8179.15 (19)C16—O2—C17—C22−9.4 (2)
C2—C7—C8—O3177.60 (17)C16—O2—C17—C18170.45 (12)
C6—C7—C8—O3−2.2 (3)C22—C17—C18—C19−21.3 (2)
C2—C7—C8—C9−2.3 (2)O2—C17—C18—C19158.87 (12)
C6—C7—C8—C9177.86 (17)C17—C18—C19—C2047.87 (17)
O1—C1—C9—C8−0.2 (3)C17—C18—C19—C25−72.29 (16)
O1—C1—C9—C10−179.64 (15)C17—C18—C19—C26168.15 (14)
O3—C8—C9—C1−177.33 (17)C25—C19—C20—C2165.87 (19)
C7—C8—C9—C12.6 (2)C26—C19—C20—C21−173.42 (15)
O3—C8—C9—C102.1 (3)C18—C19—C20—C21−54.16 (18)
C7—C8—C9—C10−178.01 (14)C19—C20—C21—O5−149.34 (16)
C1—C9—C10—C22−121.20 (15)C19—C20—C21—C2232.2 (2)
C8—C9—C10—C2259.36 (18)O2—C17—C22—C21176.60 (13)
C1—C9—C10—C11117.14 (16)C18—C17—C22—C21−3.2 (2)
C8—C9—C10—C11−62.29 (18)O2—C17—C22—C10−5.4 (2)
C22—C10—C11—C16−18.99 (19)C18—C17—C22—C10174.73 (14)
C9—C10—C11—C16104.44 (16)O5—C21—C22—C17179.38 (15)
C22—C10—C11—C12161.65 (13)C20—C21—C22—C17−2.2 (2)
C9—C10—C11—C12−74.93 (16)O5—C21—C22—C101.4 (2)
C16—C11—C12—O4179.18 (16)C20—C21—C22—C10179.80 (13)
C10—C11—C12—O4−1.4 (2)C11—C10—C22—C1718.33 (19)
C16—C11—C12—C132.2 (2)C9—C10—C22—C17−104.74 (16)
C10—C11—C12—C13−178.44 (15)C11—C10—C22—C21−163.73 (13)
O4—C12—C13—C14149.58 (17)C9—C10—C22—C2173.20 (17)
D—H···AD—HH···AD···AD—H···A
C15—H15B···O4i0.972.443.3487 (19)156
C18—H18A···O5i0.972.453.3821 (19)162
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C15—H15B⋯O4i0.972.443.3487 (19)156
C18—H18A⋯O5i0.972.453.3821 (19)162

Symmetry code: (i) .

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