| Literature DB >> 22259508 |
A S Praveen, Jerry P Jasinski, James A Golen, H S Yathirajan, B Narayana.
Abstract
In the title compound, C(15)H(17)N(3)O(3), the dihedral angle between the pyrimidine and benzene rings is 87.0 (7)°. In the crystal, mol-ecules are linked into inversion dimers with R(2) (2)(8) graph-set motifs by a pair of N-H⋯O hydrogen bonds. Weak C-H⋯O hydrogen bonds and inter-molecular π-π inter-actions [centroid-centroid distance = 3.544 (1) Å] are also observed.Entities:
Year: 2011 PMID: 22259508 PMCID: PMC3254559 DOI: 10.1107/S1600536811054493
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C15H17N3O3 | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 3427 reflections | |
| θ = 3.1–32.3° | |
| µ = 0.09 mm−1 | |
| α = 74.420 (7)° | |
| β = 86.540 (6)° | Chunk, colorless |
| γ = 69.186 (8)° | 0.42 × 0.34 × 0.22 mm |
| Oxford Diffraction Xcalibur Eos Gemini diffractometer | 4735 independent reflections |
| Radiation source: Enhance (Mo) X-ray Source | 3887 reflections with |
| graphite | |
| Detector resolution: 16.1500 pixels mm-1 | θmax = 32.3°, θmin = 3.1° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 8350 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 4735 reflections | (Δ/σ)max < 0.001 |
| 197 parameters | Δρmax = 0.37 e Å−3 |
| 0 restraints | Δρmin = −0.22 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.53082 (13) | 0.72818 (11) | −0.19967 (6) | 0.03281 (19) | |
| O2 | 0.68411 (13) | 0.78056 (10) | 0.11132 (7) | 0.03380 (19) | |
| O3 | 1.08112 (15) | −0.05781 (10) | 0.12226 (7) | 0.0384 (2) | |
| N1 | 0.71599 (12) | 0.47480 (11) | −0.07942 (6) | 0.02315 (17) | |
| N2 | 0.79478 (12) | 0.50033 (10) | 0.08008 (6) | 0.02230 (17) | |
| N3 | 0.90035 (13) | 0.22301 (11) | 0.03696 (7) | 0.02455 (18) | |
| H3N | 0.902 (2) | 0.177 (2) | −0.0136 (11) | 0.029 (3)* | |
| C1 | 0.5650 (2) | 0.60945 (19) | −0.26389 (9) | 0.0382 (3) | |
| H1A | 0.7060 | 0.5570 | −0.2723 | 0.057* | |
| H1B | 0.4987 | 0.6768 | −0.3282 | 0.057* | |
| H1C | 0.5130 | 0.5152 | −0.2340 | 0.057* | |
| C2 | 0.61661 (14) | 0.65189 (13) | −0.10610 (8) | 0.0241 (2) | |
| C3 | 0.59691 (16) | 0.76447 (13) | −0.04444 (8) | 0.0276 (2) | |
| H3 | 0.5249 | 0.8880 | −0.0642 | 0.033* | |
| C4 | 0.69324 (15) | 0.67809 (13) | 0.04902 (8) | 0.02425 (19) | |
| C5 | 0.79884 (13) | 0.40869 (12) | 0.01346 (7) | 0.02076 (18) | |
| C6 | 0.80040 (19) | 0.69559 (16) | 0.20397 (9) | 0.0340 (2) | |
| H6A | 0.7555 | 0.6020 | 0.2436 | 0.051* | |
| H6B | 0.7846 | 0.7839 | 0.2404 | 0.051* | |
| H6C | 0.9389 | 0.6440 | 0.1900 | 0.051* | |
| C7 | 0.99644 (15) | 0.09987 (13) | 0.12367 (8) | 0.0244 (2) | |
| C8 | 0.99476 (16) | 0.15771 (13) | 0.21836 (8) | 0.0254 (2) | |
| H8A | 1.0698 | 0.2384 | 0.2088 | 0.030* | |
| H8B | 0.8580 | 0.2239 | 0.2317 | 0.030* | |
| C9 | 1.08408 (16) | −0.00098 (13) | 0.30737 (8) | 0.0268 (2) | |
| C10 | 0.96179 (18) | −0.06648 (14) | 0.37637 (8) | 0.0291 (2) | |
| H10 | 0.8237 | −0.0125 | 0.3662 | 0.035* | |
| C11 | 1.0405 (2) | −0.21160 (16) | 0.46093 (9) | 0.0365 (3) | |
| C12 | 1.2469 (2) | −0.28988 (17) | 0.47418 (10) | 0.0465 (3) | |
| H12 | 1.3028 | −0.3863 | 0.5299 | 0.056* | |
| C13 | 1.3710 (2) | −0.22672 (19) | 0.40569 (13) | 0.0509 (4) | |
| H13 | 1.5091 | −0.2811 | 0.4158 | 0.061* | |
| C14 | 1.29121 (19) | −0.08320 (17) | 0.32224 (11) | 0.0395 (3) | |
| H14 | 1.3754 | −0.0418 | 0.2763 | 0.047* | |
| C15 | 0.9033 (3) | −0.2773 (2) | 0.53551 (11) | 0.0532 (4) | |
| H15A | 0.8517 | −0.3510 | 0.5095 | 0.080* | |
| H15B | 0.7944 | −0.1755 | 0.5467 | 0.080* | |
| H15C | 0.9765 | −0.3474 | 0.5978 | 0.080* |
| O1 | 0.0345 (4) | 0.0291 (4) | 0.0288 (4) | −0.0088 (3) | −0.0081 (3) | 0.0008 (3) |
| O2 | 0.0394 (4) | 0.0197 (3) | 0.0398 (5) | −0.0029 (3) | −0.0054 (3) | −0.0126 (3) |
| O3 | 0.0558 (5) | 0.0174 (3) | 0.0345 (4) | −0.0007 (3) | −0.0127 (4) | −0.0084 (3) |
| N1 | 0.0225 (4) | 0.0204 (4) | 0.0253 (4) | −0.0070 (3) | −0.0003 (3) | −0.0044 (3) |
| N2 | 0.0225 (4) | 0.0166 (3) | 0.0269 (4) | −0.0053 (3) | 0.0003 (3) | −0.0064 (3) |
| N3 | 0.0291 (4) | 0.0165 (3) | 0.0264 (4) | −0.0042 (3) | −0.0036 (3) | −0.0072 (3) |
| C1 | 0.0366 (6) | 0.0473 (7) | 0.0269 (5) | −0.0117 (5) | −0.0025 (4) | −0.0072 (5) |
| C2 | 0.0207 (4) | 0.0226 (4) | 0.0264 (5) | −0.0082 (3) | −0.0015 (3) | −0.0007 (4) |
| C3 | 0.0272 (5) | 0.0162 (4) | 0.0343 (5) | −0.0042 (3) | −0.0032 (4) | −0.0021 (4) |
| C4 | 0.0231 (4) | 0.0177 (4) | 0.0315 (5) | −0.0058 (3) | 0.0008 (4) | −0.0077 (4) |
| C5 | 0.0192 (4) | 0.0170 (4) | 0.0257 (4) | −0.0065 (3) | 0.0009 (3) | −0.0049 (3) |
| C6 | 0.0396 (6) | 0.0300 (5) | 0.0348 (6) | −0.0103 (5) | −0.0018 (5) | −0.0148 (4) |
| C7 | 0.0264 (5) | 0.0181 (4) | 0.0277 (5) | −0.0061 (3) | −0.0028 (4) | −0.0061 (3) |
| C8 | 0.0285 (5) | 0.0194 (4) | 0.0254 (5) | −0.0042 (4) | −0.0018 (4) | −0.0066 (3) |
| C9 | 0.0311 (5) | 0.0195 (4) | 0.0272 (5) | −0.0044 (4) | −0.0052 (4) | −0.0067 (4) |
| C10 | 0.0358 (5) | 0.0253 (5) | 0.0268 (5) | −0.0091 (4) | −0.0025 (4) | −0.0092 (4) |
| C11 | 0.0591 (8) | 0.0274 (5) | 0.0258 (5) | −0.0168 (5) | −0.0020 (5) | −0.0084 (4) |
| C12 | 0.0640 (9) | 0.0279 (6) | 0.0379 (7) | −0.0077 (6) | −0.0185 (6) | −0.0002 (5) |
| C13 | 0.0398 (7) | 0.0373 (7) | 0.0596 (9) | 0.0001 (5) | −0.0188 (6) | −0.0012 (6) |
| C14 | 0.0319 (6) | 0.0319 (6) | 0.0466 (7) | −0.0050 (5) | −0.0050 (5) | −0.0044 (5) |
| C15 | 0.0867 (12) | 0.0447 (8) | 0.0335 (7) | −0.0317 (8) | 0.0095 (7) | −0.0086 (6) |
| O1—C2 | 1.3528 (12) | C6—H6C | 0.9600 |
| O1—C1 | 1.4376 (16) | C7—C8 | 1.5058 (14) |
| O2—C4 | 1.3404 (12) | C8—C9 | 1.5038 (14) |
| O2—C6 | 1.4338 (14) | C8—H8A | 0.9700 |
| O3—C7 | 1.2235 (12) | C8—H8B | 0.9700 |
| N1—C2 | 1.3279 (12) | C9—C10 | 1.3865 (16) |
| N1—C5 | 1.3356 (12) | C9—C14 | 1.3947 (16) |
| N2—C5 | 1.3298 (12) | C10—C11 | 1.3991 (16) |
| N2—C4 | 1.3373 (12) | C10—H10 | 0.9300 |
| N3—C7 | 1.3734 (13) | C11—C12 | 1.386 (2) |
| N3—C5 | 1.3897 (12) | C11—C15 | 1.507 (2) |
| N3—H3N | 0.875 (15) | C12—C13 | 1.384 (2) |
| C1—H1A | 0.9600 | C12—H12 | 0.9300 |
| C1—H1B | 0.9600 | C13—C14 | 1.3842 (19) |
| C1—H1C | 0.9600 | C13—H13 | 0.9300 |
| C2—C3 | 1.3843 (15) | C14—H14 | 0.9300 |
| C3—C4 | 1.3839 (15) | C15—H15A | 0.9600 |
| C3—H3 | 0.9300 | C15—H15B | 0.9600 |
| C6—H6A | 0.9600 | C15—H15C | 0.9600 |
| C6—H6B | 0.9600 | ||
| C2—O1—C1 | 116.20 (9) | O3—C7—C8 | 121.00 (9) |
| C4—O2—C6 | 117.71 (8) | N3—C7—C8 | 120.60 (8) |
| C2—N1—C5 | 115.15 (8) | C9—C8—C7 | 111.97 (8) |
| C5—N2—C4 | 114.87 (9) | C9—C8—H8A | 109.2 |
| C7—N3—C5 | 132.24 (9) | C7—C8—H8A | 109.2 |
| C7—N3—H3N | 114.9 (10) | C9—C8—H8B | 109.2 |
| C5—N3—H3N | 112.9 (10) | C7—C8—H8B | 109.2 |
| O1—C1—H1A | 109.5 | H8A—C8—H8B | 107.9 |
| O1—C1—H1B | 109.5 | C10—C9—C14 | 119.05 (10) |
| H1A—C1—H1B | 109.5 | C10—C9—C8 | 120.50 (10) |
| O1—C1—H1C | 109.5 | C14—C9—C8 | 120.45 (10) |
| H1A—C1—H1C | 109.5 | C9—C10—C11 | 121.81 (11) |
| H1B—C1—H1C | 109.5 | C9—C10—H10 | 119.1 |
| N1—C2—O1 | 118.26 (9) | C11—C10—H10 | 119.1 |
| N1—C2—C3 | 124.09 (9) | C12—C11—C10 | 117.89 (12) |
| O1—C2—C3 | 117.65 (9) | C12—C11—C15 | 121.62 (12) |
| C4—C3—C2 | 114.49 (9) | C10—C11—C15 | 120.48 (13) |
| C4—C3—H3 | 122.8 | C13—C12—C11 | 121.00 (11) |
| C2—C3—H3 | 122.8 | C13—C12—H12 | 119.5 |
| N2—C4—O2 | 118.59 (9) | C11—C12—H12 | 119.5 |
| N2—C4—C3 | 124.04 (9) | C14—C13—C12 | 120.53 (13) |
| O2—C4—C3 | 117.37 (9) | C14—C13—H13 | 119.7 |
| N2—C5—N1 | 127.35 (8) | C12—C13—H13 | 119.7 |
| N2—C5—N3 | 120.21 (9) | C13—C14—C9 | 119.71 (13) |
| N1—C5—N3 | 112.44 (8) | C13—C14—H14 | 120.1 |
| O2—C6—H6A | 109.5 | C9—C14—H14 | 120.1 |
| O2—C6—H6B | 109.5 | C11—C15—H15A | 109.5 |
| H6A—C6—H6B | 109.5 | C11—C15—H15B | 109.5 |
| O2—C6—H6C | 109.5 | H15A—C15—H15B | 109.5 |
| H6A—C6—H6C | 109.5 | C11—C15—H15C | 109.5 |
| H6B—C6—H6C | 109.5 | H15A—C15—H15C | 109.5 |
| O3—C7—N3 | 118.39 (9) | H15B—C15—H15C | 109.5 |
| C5—N1—C2—O1 | 179.26 (8) | C7—N3—C5—N1 | −176.03 (10) |
| C5—N1—C2—C3 | 0.03 (14) | C5—N3—C7—O3 | −177.41 (11) |
| C1—O1—C2—N1 | −3.14 (14) | C5—N3—C7—C8 | 3.42 (17) |
| C1—O1—C2—C3 | 176.14 (9) | O3—C7—C8—C9 | −6.82 (15) |
| N1—C2—C3—C4 | 1.02 (15) | N3—C7—C8—C9 | 172.33 (9) |
| O1—C2—C3—C4 | −178.21 (9) | C7—C8—C9—C10 | −101.24 (11) |
| C5—N2—C4—O2 | −179.18 (9) | C7—C8—C9—C14 | 79.42 (13) |
| C5—N2—C4—C3 | 0.40 (14) | C14—C9—C10—C11 | 0.61 (16) |
| C6—O2—C4—N2 | 5.94 (15) | C8—C9—C10—C11 | −178.73 (10) |
| C6—O2—C4—C3 | −173.67 (10) | C9—C10—C11—C12 | −0.16 (17) |
| C2—C3—C4—N2 | −1.26 (15) | C9—C10—C11—C15 | 178.87 (11) |
| C2—C3—C4—O2 | 178.33 (9) | C10—C11—C12—C13 | −0.20 (19) |
| C4—N2—C5—N1 | 0.87 (14) | C15—C11—C12—C13 | −179.23 (13) |
| C4—N2—C5—N3 | 179.79 (9) | C11—C12—C13—C14 | 0.1 (2) |
| C2—N1—C5—N2 | −1.08 (14) | C12—C13—C14—C9 | 0.4 (2) |
| C2—N1—C5—N3 | 179.93 (8) | C10—C9—C14—C13 | −0.70 (19) |
| C7—N3—C5—N2 | 4.91 (16) | C8—C9—C14—C13 | 178.65 (12) |
| H··· | ||||
| N3—H3N···O3i | 0.875 (15) | 1.979 (15) | 2.8535 (12) | 176.0 (14) |
| C3—H3···O2ii | 0.93 | 2.52 | 3.4459 (12) | 177. |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N3—H3 | 0.875 (15) | 1.979 (15) | 2.8535 (12) | 176.0 (14) |
| C3—H3⋯O2ii | 0.93 | 2.52 | 3.4459 (12) | 177 |
Symmetry codes: (i) ; (ii) .