Literature DB >> 22259508

N-(4,6-Dimeth-oxy-pyrimidin-2-yl)-2-(3-methyl-phen-yl)acetamide.

A S Praveen, Jerry P Jasinski, James A Golen, H S Yathirajan, B Narayana.   

Abstract

In the title compound, C(15)H(17)N(3)O(3), the dihedral angle between the pyrimidine and benzene rings is 87.0 (7)°. In the crystal, mol-ecules are linked into inversion dimers with R(2) (2)(8) graph-set motifs by a pair of N-H⋯O hydrogen bonds. Weak C-H⋯O hydrogen bonds and inter-molecular π-π inter-actions [centroid-centroid distance = 3.544 (1) Å] are also observed.

Entities:  

Year:  2011        PMID: 22259508      PMCID: PMC3254559          DOI: 10.1107/S1600536811054493

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the pyrimidine ring in vitamins, see: Cox (1968 ▶). For barbitone, the first barbiturate hypnotic sedative, see: Russell (1945 ▶). For the similarity of related N-substituted 2-aryl­acetamides to the lateral chain of natural benzyl­penicillin, see: Mijin & Marinkovic (2006 ▶); Mijin et al. (2008 ▶). For the coordination abilities of amides, see: Wu et al. (2008 ▶, 2010 ▶). For related structures, see: John et al. (2010 ▶); Nogueira et al. (2010 ▶); Praveen et al. (2011 ▶); Selig et al. (2010 ▶); Wen et al. (2010 ▶). For standard bond lengths, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C15H17N3O3 M = 287.32 Triclinic, a = 7.1536 (6) Å b = 8.2070 (7) Å c = 13.8259 (10) Å α = 74.420 (7)° β = 86.540 (6)° γ = 69.186 (8)° V = 730.30 (10) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 173 K 0.42 × 0.34 × 0.22 mm

Data collection

Oxford Diffraction Xcalibur Eos Gemini diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2010 ▶) T min = 0.961, T max = 0.980 8350 measured reflections 4735 independent reflections 3887 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.132 S = 1.02 4735 reflections 197 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.37 e Å−3 Δρmin = −0.22 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis RED (Oxford Diffraction, 2010 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811054493/is5034sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811054493/is5034Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811054493/is5034Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H17N3O3Z = 2
Mr = 287.32F(000) = 304
Triclinic, P1Dx = 1.306 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.1536 (6) ÅCell parameters from 3427 reflections
b = 8.2070 (7) Åθ = 3.1–32.3°
c = 13.8259 (10) ŵ = 0.09 mm1
α = 74.420 (7)°T = 173 K
β = 86.540 (6)°Chunk, colorless
γ = 69.186 (8)°0.42 × 0.34 × 0.22 mm
V = 730.30 (10) Å3
Oxford Diffraction Xcalibur Eos Gemini diffractometer4735 independent reflections
Radiation source: Enhance (Mo) X-ray Source3887 reflections with I > 2σ(I)
graphiteRint = 0.020
Detector resolution: 16.1500 pixels mm-1θmax = 32.3°, θmin = 3.1°
ω scansh = −10→10
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2010)k = −10→12
Tmin = 0.961, Tmax = 0.980l = −20→20
8350 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.132H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.0664P)2 + 0.156P] where P = (Fo2 + 2Fc2)/3
4735 reflections(Δ/σ)max < 0.001
197 parametersΔρmax = 0.37 e Å3
0 restraintsΔρmin = −0.22 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.53082 (13)0.72818 (11)−0.19967 (6)0.03281 (19)
O20.68411 (13)0.78056 (10)0.11132 (7)0.03380 (19)
O31.08112 (15)−0.05781 (10)0.12226 (7)0.0384 (2)
N10.71599 (12)0.47480 (11)−0.07942 (6)0.02315 (17)
N20.79478 (12)0.50033 (10)0.08008 (6)0.02230 (17)
N30.90035 (13)0.22301 (11)0.03696 (7)0.02455 (18)
H3N0.902 (2)0.177 (2)−0.0136 (11)0.029 (3)*
C10.5650 (2)0.60945 (19)−0.26389 (9)0.0382 (3)
H1A0.70600.5570−0.27230.057*
H1B0.49870.6768−0.32820.057*
H1C0.51300.5152−0.23400.057*
C20.61661 (14)0.65189 (13)−0.10610 (8)0.0241 (2)
C30.59691 (16)0.76447 (13)−0.04444 (8)0.0276 (2)
H30.52490.8880−0.06420.033*
C40.69324 (15)0.67809 (13)0.04902 (8)0.02425 (19)
C50.79884 (13)0.40869 (12)0.01346 (7)0.02076 (18)
C60.80040 (19)0.69559 (16)0.20397 (9)0.0340 (2)
H6A0.75550.60200.24360.051*
H6B0.78460.78390.24040.051*
H6C0.93890.64400.19000.051*
C70.99644 (15)0.09987 (13)0.12367 (8)0.0244 (2)
C80.99476 (16)0.15771 (13)0.21836 (8)0.0254 (2)
H8A1.06980.23840.20880.030*
H8B0.85800.22390.23170.030*
C91.08408 (16)−0.00098 (13)0.30737 (8)0.0268 (2)
C100.96179 (18)−0.06648 (14)0.37637 (8)0.0291 (2)
H100.8237−0.01250.36620.035*
C111.0405 (2)−0.21160 (16)0.46093 (9)0.0365 (3)
C121.2469 (2)−0.28988 (17)0.47418 (10)0.0465 (3)
H121.3028−0.38630.52990.056*
C131.3710 (2)−0.22672 (19)0.40569 (13)0.0509 (4)
H131.5091−0.28110.41580.061*
C141.29121 (19)−0.08320 (17)0.32224 (11)0.0395 (3)
H141.3754−0.04180.27630.047*
C150.9033 (3)−0.2773 (2)0.53551 (11)0.0532 (4)
H15A0.8517−0.35100.50950.080*
H15B0.7944−0.17550.54670.080*
H15C0.9765−0.34740.59780.080*
U11U22U33U12U13U23
O10.0345 (4)0.0291 (4)0.0288 (4)−0.0088 (3)−0.0081 (3)0.0008 (3)
O20.0394 (4)0.0197 (3)0.0398 (5)−0.0029 (3)−0.0054 (3)−0.0126 (3)
O30.0558 (5)0.0174 (3)0.0345 (4)−0.0007 (3)−0.0127 (4)−0.0084 (3)
N10.0225 (4)0.0204 (4)0.0253 (4)−0.0070 (3)−0.0003 (3)−0.0044 (3)
N20.0225 (4)0.0166 (3)0.0269 (4)−0.0053 (3)0.0003 (3)−0.0064 (3)
N30.0291 (4)0.0165 (3)0.0264 (4)−0.0042 (3)−0.0036 (3)−0.0072 (3)
C10.0366 (6)0.0473 (7)0.0269 (5)−0.0117 (5)−0.0025 (4)−0.0072 (5)
C20.0207 (4)0.0226 (4)0.0264 (5)−0.0082 (3)−0.0015 (3)−0.0007 (4)
C30.0272 (5)0.0162 (4)0.0343 (5)−0.0042 (3)−0.0032 (4)−0.0021 (4)
C40.0231 (4)0.0177 (4)0.0315 (5)−0.0058 (3)0.0008 (4)−0.0077 (4)
C50.0192 (4)0.0170 (4)0.0257 (4)−0.0065 (3)0.0009 (3)−0.0049 (3)
C60.0396 (6)0.0300 (5)0.0348 (6)−0.0103 (5)−0.0018 (5)−0.0148 (4)
C70.0264 (5)0.0181 (4)0.0277 (5)−0.0061 (3)−0.0028 (4)−0.0061 (3)
C80.0285 (5)0.0194 (4)0.0254 (5)−0.0042 (4)−0.0018 (4)−0.0066 (3)
C90.0311 (5)0.0195 (4)0.0272 (5)−0.0044 (4)−0.0052 (4)−0.0067 (4)
C100.0358 (5)0.0253 (5)0.0268 (5)−0.0091 (4)−0.0025 (4)−0.0092 (4)
C110.0591 (8)0.0274 (5)0.0258 (5)−0.0168 (5)−0.0020 (5)−0.0084 (4)
C120.0640 (9)0.0279 (6)0.0379 (7)−0.0077 (6)−0.0185 (6)−0.0002 (5)
C130.0398 (7)0.0373 (7)0.0596 (9)0.0001 (5)−0.0188 (6)−0.0012 (6)
C140.0319 (6)0.0319 (6)0.0466 (7)−0.0050 (5)−0.0050 (5)−0.0044 (5)
C150.0867 (12)0.0447 (8)0.0335 (7)−0.0317 (8)0.0095 (7)−0.0086 (6)
O1—C21.3528 (12)C6—H6C0.9600
O1—C11.4376 (16)C7—C81.5058 (14)
O2—C41.3404 (12)C8—C91.5038 (14)
O2—C61.4338 (14)C8—H8A0.9700
O3—C71.2235 (12)C8—H8B0.9700
N1—C21.3279 (12)C9—C101.3865 (16)
N1—C51.3356 (12)C9—C141.3947 (16)
N2—C51.3298 (12)C10—C111.3991 (16)
N2—C41.3373 (12)C10—H100.9300
N3—C71.3734 (13)C11—C121.386 (2)
N3—C51.3897 (12)C11—C151.507 (2)
N3—H3N0.875 (15)C12—C131.384 (2)
C1—H1A0.9600C12—H120.9300
C1—H1B0.9600C13—C141.3842 (19)
C1—H1C0.9600C13—H130.9300
C2—C31.3843 (15)C14—H140.9300
C3—C41.3839 (15)C15—H15A0.9600
C3—H30.9300C15—H15B0.9600
C6—H6A0.9600C15—H15C0.9600
C6—H6B0.9600
C2—O1—C1116.20 (9)O3—C7—C8121.00 (9)
C4—O2—C6117.71 (8)N3—C7—C8120.60 (8)
C2—N1—C5115.15 (8)C9—C8—C7111.97 (8)
C5—N2—C4114.87 (9)C9—C8—H8A109.2
C7—N3—C5132.24 (9)C7—C8—H8A109.2
C7—N3—H3N114.9 (10)C9—C8—H8B109.2
C5—N3—H3N112.9 (10)C7—C8—H8B109.2
O1—C1—H1A109.5H8A—C8—H8B107.9
O1—C1—H1B109.5C10—C9—C14119.05 (10)
H1A—C1—H1B109.5C10—C9—C8120.50 (10)
O1—C1—H1C109.5C14—C9—C8120.45 (10)
H1A—C1—H1C109.5C9—C10—C11121.81 (11)
H1B—C1—H1C109.5C9—C10—H10119.1
N1—C2—O1118.26 (9)C11—C10—H10119.1
N1—C2—C3124.09 (9)C12—C11—C10117.89 (12)
O1—C2—C3117.65 (9)C12—C11—C15121.62 (12)
C4—C3—C2114.49 (9)C10—C11—C15120.48 (13)
C4—C3—H3122.8C13—C12—C11121.00 (11)
C2—C3—H3122.8C13—C12—H12119.5
N2—C4—O2118.59 (9)C11—C12—H12119.5
N2—C4—C3124.04 (9)C14—C13—C12120.53 (13)
O2—C4—C3117.37 (9)C14—C13—H13119.7
N2—C5—N1127.35 (8)C12—C13—H13119.7
N2—C5—N3120.21 (9)C13—C14—C9119.71 (13)
N1—C5—N3112.44 (8)C13—C14—H14120.1
O2—C6—H6A109.5C9—C14—H14120.1
O2—C6—H6B109.5C11—C15—H15A109.5
H6A—C6—H6B109.5C11—C15—H15B109.5
O2—C6—H6C109.5H15A—C15—H15B109.5
H6A—C6—H6C109.5C11—C15—H15C109.5
H6B—C6—H6C109.5H15A—C15—H15C109.5
O3—C7—N3118.39 (9)H15B—C15—H15C109.5
C5—N1—C2—O1179.26 (8)C7—N3—C5—N1−176.03 (10)
C5—N1—C2—C30.03 (14)C5—N3—C7—O3−177.41 (11)
C1—O1—C2—N1−3.14 (14)C5—N3—C7—C83.42 (17)
C1—O1—C2—C3176.14 (9)O3—C7—C8—C9−6.82 (15)
N1—C2—C3—C41.02 (15)N3—C7—C8—C9172.33 (9)
O1—C2—C3—C4−178.21 (9)C7—C8—C9—C10−101.24 (11)
C5—N2—C4—O2−179.18 (9)C7—C8—C9—C1479.42 (13)
C5—N2—C4—C30.40 (14)C14—C9—C10—C110.61 (16)
C6—O2—C4—N25.94 (15)C8—C9—C10—C11−178.73 (10)
C6—O2—C4—C3−173.67 (10)C9—C10—C11—C12−0.16 (17)
C2—C3—C4—N2−1.26 (15)C9—C10—C11—C15178.87 (11)
C2—C3—C4—O2178.33 (9)C10—C11—C12—C13−0.20 (19)
C4—N2—C5—N10.87 (14)C15—C11—C12—C13−179.23 (13)
C4—N2—C5—N3179.79 (9)C11—C12—C13—C140.1 (2)
C2—N1—C5—N2−1.08 (14)C12—C13—C14—C90.4 (2)
C2—N1—C5—N3179.93 (8)C10—C9—C14—C13−0.70 (19)
C7—N3—C5—N24.91 (16)C8—C9—C14—C13178.65 (12)
D—H···AD—HH···AD···AD—H···A
N3—H3N···O3i0.875 (15)1.979 (15)2.8535 (12)176.0 (14)
C3—H3···O2ii0.932.523.4459 (12)177.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3N⋯O3i0.875 (15)1.979 (15)2.8535 (12)176.0 (14)
C3—H3⋯O2ii0.932.523.4459 (12)177

Symmetry codes: (i) ; (ii) .

  7 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2-(4-Fluoro-phen-yl)-N-{4-[6-(4-fluoro-phen-yl)-2,3-dihydro-imidazo[2,1-b][1,3]thia-zol-5-yl]pyridin-2-yl}acetamide.

Authors:  Roland Selig; Dieter Schollmeyer; Wolfgang Albrecht; Stefan Laufer
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-21

3.  7-Chloro-4-[(E)-2-(2-methoxy-benzyl-idene)hydrazin-1-yl]quinoline monohydrate.

Authors:  Marcus V N de Souza; R Alan Howie; Edward R T Tiekink; James L Wardell; Solange M S V Wardell; Carlos R Kaiser
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-02-27

4.  Aqua-[N-phenyl-2-(quinolin-8-yl-oxy)acetamide]dinitratozinc(II).

Authors:  Wei-Na Wu; Yuan Wang; Ai-Yun Zhang; Rui-Qi Zhao; Qiu-Fen Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-02-13

5.  2-[(5,7-Dibromo-quinolin-8-yl)-oxy]-N-(2-meth-oxy-phen-yl)acetamide.

Authors:  Yong-Hong Wen; Hong-Qing Qin; Hui-Ling Wen
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-24

6.  N-[4-(Benzyl-sulfamo-yl)phen-yl]acetamide.

Authors:  Peter John; Waqar Ahmad; Islam Ullah Khan; Shahzad Sharif; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-17

7.  N-(3-Chloro-4-fluoro-phen-yl)-2-(naphthalen-1-yl)acetamide.

Authors:  A S Praveen; Jerry P Jasinski; James A Golen; B Narayana; H S Yathirajan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-06-25
  7 in total
  2 in total

1.  2-(4-Bromo-phen-yl)-N-(3,4-di-fluoro-phen-yl)acetamide.

Authors:  A S Praveen; H S Yathirajan; Jerry P Jasinski; Amanda C Keeley; B Narayana; B K Sarojini
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-05-18

2.  2-(4-Chloro-phen-yl)-N-(3,4-di-fluoro-phen-yl)acetamide.

Authors:  A S Praveen; H S Yathirajan; Jerry P Jasinski; Amanda C Keeley; B Narayana; B K Sarojini
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-05-31
  2 in total

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