Literature DB >> 22259474

Form II of adipic acid-nicotinohydrazide (1/2).

Andreas Lemmerer, Joel Bernstein, Volker Kahlenberg.   

Abstract

The crystal structure of the title co-crystal, 2C(6)H(7)N(3)O·C(6)H(10)O(4), is a second polymorph, designated form II, of the co-crystal formed between the two mol-ecules [Lemmerer et al. (2011 ▶). CrystEngComm, 13, 55-59]. The asymmetric unit comprises one mol-ecule of nicotinic acid hydrazide, and one half-mol-ecule of adipic acid (the entire mol-ecule is completed by the application of a centre of inversion). In the crystal, mol-ecules assemble into a three-dimensional network of hydrogen bonds, formed by three N-H⋯O hydrogen bonds and one O-H⋯N hydrogen bond. The O-H⋯N hydrogen bond formed between the carboxyl group and the pyridine ring is supported by a C-H⋯O hydrogen bond.

Entities:  

Year:  2011        PMID: 22259474      PMCID: PMC3254528          DOI: 10.1107/S1600536811054043

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the first polymorph, see: Lemmerer et al. (2011 ▶). For experimental techniques, see: Friščić et al. (2009 ▶); Skovsgaard & Bond (2009 ▶); Karki et al. (2009 ▶). For hydrogen-bonding motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

2C6H7N3O·C6H10O4 M = 420.43 Monoclinic, a = 15.9747 (4) Å b = 7.3309 (2) Å c = 8.7451 (2) Å β = 103.729 (3)° V = 994.87 (4) Å3 Z = 2 Mo Kα radiation μ = 0.11 mm−1 T = 173 K 0.32 × 0.28 × 0.04 mm

Data collection

Oxford Diffraction Xcalibur diffractometer with a Ruby (Gemini ultra Mo) detector Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2006 ▶) T min = 0.92, T max = 0.98 6207 measured reflections 1845 independent reflections 1487 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.077 S = 1.02 1845 reflections 153 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.18 e Å−3 Δρmin = −0.14 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2006 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 1999 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811054043/tk5035sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811054043/tk5035Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811054043/tk5035Isup3.mol Supplementary material file. DOI: 10.1107/S1600536811054043/tk5035Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
2C6H7N3O·C6H10O4F(000) = 444
Mr = 420.43Dx = 1.403 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3572 reflections
a = 15.9747 (4) Åθ = 3.1–28.5°
b = 7.3309 (2) ŵ = 0.11 mm1
c = 8.7451 (2) ÅT = 173 K
β = 103.729 (3)°Block, colourless
V = 994.87 (4) Å30.32 × 0.28 × 0.04 mm
Z = 2
Oxford Diffraction Xcalibur diffractometer with a Ruby (Gemini ultra Mo) detector1487 reflections with I > 2σ(I)
ω scansRint = 0.020
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2006)θmax = 25.5°, θmin = 3.1°
Tmin = 0.92, Tmax = 0.98h = −13→19
6207 measured reflectionsk = −8→8
1845 independent reflectionsl = −10→9
Refinement on F2H atoms treated by a mixture of independent and constrained refinement
Least-squares matrix: fullw = 1/[σ2(Fo2) + (0.048P)2] where P = (Fo2 + 2Fc2)/3
R[F2 > 2σ(F2)] = 0.029(Δ/σ)max < 0.001
wR(F2) = 0.077Δρmax = 0.18 e Å3
S = 1.02Δρmin = −0.14 e Å3
1845 reflectionsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
153 parametersExtinction coefficient: 0.0095 (18)
0 restraints
Experimental. Absorption corrections were made using the program Crysalis Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm in CrysAlisPro.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
C10.16016 (7)0.37907 (15)0.35826 (13)0.0237 (3)
C20.22411 (7)0.44813 (15)0.47997 (13)0.0248 (3)
H2A0.22940.57670.49220.03*
C30.27134 (8)0.16066 (15)0.56223 (15)0.0296 (3)
H30.31050.08410.63260.036*
C40.20920 (8)0.08110 (15)0.44526 (15)0.0317 (3)
H40.2056−0.04790.43550.038*
C50.15231 (8)0.19064 (16)0.34265 (14)0.0291 (3)
H50.10820.13840.26220.035*
C60.09817 (8)0.49832 (15)0.24735 (13)0.0243 (3)
N10.13026 (7)0.65323 (12)0.20370 (11)0.0259 (2)
H10.1859 (9)0.6738 (17)0.2300 (15)0.030 (3)*
N20.27881 (6)0.34156 (13)0.58100 (11)0.0276 (3)
N30.07997 (7)0.77311 (15)0.09121 (13)0.0303 (3)
H3A0.0389 (9)0.8250 (17)0.1382 (16)0.036 (4)*
H3B0.0508 (9)0.7022 (19)0.0145 (18)0.042 (4)*
O10.02225 (5)0.45309 (11)0.19861 (10)0.0327 (2)
C70.38377 (7)0.67377 (15)0.82289 (13)0.0259 (3)
C80.45756 (8)0.75709 (16)0.94010 (16)0.0352 (3)
H8A0.51190.70850.92060.042*
H8B0.45430.71721.04670.042*
C90.46178 (7)0.96301 (15)0.93861 (14)0.0281 (3)
H9A0.40791.01330.95880.034*
H9B0.4661.00450.8330.034*
O20.39428 (6)0.49783 (11)0.80455 (11)0.0341 (2)
O30.32068 (5)0.75783 (10)0.75195 (11)0.0353 (2)
H20.3478 (12)0.449 (2)0.727 (2)0.069 (5)*
U11U22U33U12U13U23
C10.0214 (6)0.0264 (6)0.0251 (6)−0.0031 (5)0.0090 (5)−0.0026 (5)
C20.0240 (6)0.0226 (6)0.0279 (7)−0.0018 (5)0.0062 (5)−0.0018 (5)
C30.0293 (7)0.0270 (7)0.0342 (7)0.0028 (5)0.0105 (6)0.0043 (5)
C40.0374 (8)0.0216 (6)0.0387 (7)−0.0023 (5)0.0144 (6)−0.0018 (5)
C50.0280 (7)0.0281 (6)0.0317 (7)−0.0065 (5)0.0083 (5)−0.0057 (5)
C60.0221 (7)0.0279 (6)0.0231 (6)−0.0031 (5)0.0055 (5)−0.0062 (4)
N10.0207 (6)0.0276 (6)0.0280 (6)−0.0013 (4)0.0030 (5)0.0001 (4)
N20.0245 (6)0.0274 (6)0.0301 (6)−0.0012 (4)0.0048 (4)0.0009 (4)
N30.0284 (6)0.0319 (6)0.0290 (6)0.0001 (5)0.0038 (5)0.0023 (5)
O10.0232 (5)0.0372 (5)0.0346 (5)−0.0062 (4)0.0010 (4)0.0019 (4)
C70.0228 (7)0.0276 (7)0.0266 (6)0.0012 (5)0.0042 (5)0.0027 (5)
C80.0291 (7)0.0348 (8)0.0350 (7)0.0021 (5)−0.0058 (6)−0.0030 (5)
C90.0206 (7)0.0321 (7)0.0292 (7)0.0011 (5)0.0014 (5)−0.0023 (5)
O20.0296 (5)0.0276 (5)0.0382 (6)0.0027 (4)−0.0059 (4)−0.0015 (4)
O30.0244 (5)0.0306 (5)0.0444 (5)0.0030 (4)−0.0047 (4)0.0000 (4)
C1—C21.3845 (16)N1—H10.877 (14)
C1—C51.3908 (15)N3—H3A0.934 (14)
C1—C61.4932 (16)N3—H3B0.888 (15)
C2—N21.3371 (15)C7—O31.2180 (13)
C2—H2A0.95C7—O21.3154 (13)
C3—N21.3382 (15)C7—C81.4965 (17)
C3—C41.3747 (18)C8—C91.5113 (16)
C3—H30.95C8—H8A0.99
C4—C51.3744 (17)C8—H8B0.99
C4—H40.95C9—C9i1.522 (2)
C5—H50.95C9—H9A0.99
C6—O11.2317 (14)C9—H9B0.99
C6—N11.3383 (15)O2—H20.950 (19)
N1—N31.4178 (14)
C2—C1—C5118.13 (10)C2—N2—C3118.21 (10)
C2—C1—C6122.68 (10)N1—N3—H3A106.8 (8)
C5—C1—C6119.16 (10)N1—N3—H3B105.7 (9)
N2—C2—C1122.79 (10)H3A—N3—H3B105.8 (12)
N2—C2—H2A118.6O3—C7—O2123.24 (11)
C1—C2—H2A118.6O3—C7—C8124.36 (10)
N2—C3—C4122.64 (11)O2—C7—C8112.40 (10)
N2—C3—H3118.7C7—C8—C9115.55 (10)
C4—C3—H3118.7C7—C8—H8A108.4
C5—C4—C3119.13 (11)C9—C8—H8A108.4
C5—C4—H4120.4C7—C8—H8B108.4
C3—C4—H4120.4C9—C8—H8B108.4
C4—C5—C1119.08 (11)H8A—C8—H8B107.5
C4—C5—H5120.5C8—C9—C9i112.33 (12)
C1—C5—H5120.5C8—C9—H9A109.1
O1—C6—N1122.82 (11)C9i—C9—H9A109.1
O1—C6—C1120.92 (10)C8—C9—H9B109.1
N1—C6—C1116.25 (10)C9i—C9—H9B109.1
C6—N1—N3122.12 (10)H9A—C9—H9B107.9
C6—N1—H1120.3 (8)C7—O2—H2110.9 (10)
N3—N1—H1116.6 (8)
C5—C1—C2—N20.84 (16)C5—C1—C6—N1−143.68 (10)
C6—C1—C2—N2178.88 (10)O1—C6—N1—N3−3.28 (17)
N2—C3—C4—C50.17 (17)C1—C6—N1—N3175.83 (10)
C3—C4—C5—C11.15 (17)C1—C2—N2—C30.45 (15)
C2—C1—C5—C4−1.61 (15)C4—C3—N2—C2−0.97 (15)
C6—C1—C5—C4−179.73 (10)O3—C7—C8—C9−14.84 (18)
C2—C1—C6—O1−142.57 (11)O2—C7—C8—C9165.28 (10)
C5—C1—C6—O135.46 (15)C7—C8—C9—C9i179.74 (12)
C2—C1—C6—N138.30 (15)
D—H···AD—HH···AD···AD—H···A
N1—H1···O3ii0.877 (14)2.174 (15)3.0409 (14)169.7 (11)
N3—H3A···O1iii0.934 (14)2.129 (14)3.0349 (14)163.0 (12)
N3—H3B···O1iv0.888 (15)2.258 (16)3.1426 (14)173.7 (13)
O2—H2···N20.950 (19)1.671 (19)2.6126 (13)170.3 (16)
C2—H2A···O30.952.733.3838 (14)126.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O3i0.877 (14)2.174 (15)3.0409 (14)169.7 (11)
N3—H3A⋯O1ii0.934 (14)2.129 (14)3.0349 (14)163.0 (12)
N3—H3B⋯O1iii0.888 (15)2.258 (16)3.1426 (14)173.7 (13)
O2—H2⋯N20.950 (19)1.671 (19)2.6126 (13)170.3 (16)
C2—H2A⋯O30.952.733.3838 (14)126

Symmetry codes: (i) ; (ii) ; (iii) .

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