| Literature DB >> 22259464 |
Michaela Fridrichová1, Ivana Císařová, Ivan Němec.
Abstract
In the crystal structure of the title compound, C(4)H(13)N(5) (2+)·2NO(3) (-), the main inter-molecular inter-actions are the N-H⋯O hydrogen bonds between the cationic amino groups and the O atoms of the nitrate ions. All amino H atoms and nitrate O atoms are involved in the three-dimensional hydrogen-bond network. There are two graph-set motifs R(2) (2)(8), which include the amino groups connected to the N atoms in the biguanide 3-, 4- and 5-positions, and the O atoms of a nitrate ion. They are extended along the a axis. An O atom of the second nitrate ion is involved in a graph-set motif C(4) that is a part of a helix-like N-H⋯O⋯H-N-H⋯O⋯ chain oriented along the b axis. There are also two weak C-H⋯O inter-actions in the crystal structure.Entities:
Year: 2011 PMID: 22259464 PMCID: PMC3254359 DOI: 10.1107/S1600536811051105
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C4H13N52+·2NO3− | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 2377 reflections |
| θ = 1–26.0° | |
| µ = 0.13 mm−1 | |
| β = 101.6020 (15)° | Plate, colourless |
| 0.4 × 0.3 × 0.18 mm | |
| Nonius KappaCCD area-detector diffractometer | 1913 reflections with |
| Radiation source: fine-focus sealed tube | |
| graphite | θmax = 26.0°, θmin = 2.7° |
| Detector resolution: 9.091 pixels mm-1 | |
| φ and ω scans to fill the Ewald sphere | |
| 13222 measured reflections | |
| 2228 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: difference Fourier map | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2228 reflections | (Δ/σ)max < 0.001 |
| 178 parameters | Δρmax = 0.19 e Å−3 |
| 7 restraints | Δρmin = −0.24 e Å−3 |
| Experimental. Vibrational spectra were recorded on a Nicolet Magna 760 FTIR spectrometer: IR spectra using DRIFTS technique in the 100 - 4000 cm-1 region, with 2 cm-1 resolution and Happ-Genzel apodization, Raman spectra using Nicolet Nexus FT Raman module (1064 nm N d:YVO4 laser excitation, 200 mW power at the sample) in the 100–3700 cm-1 region, with 2 cm-1 resolution and Happ-Genzel apodization. For further characterization of the studied compound vibrational spectra are given as a peaklist: IR spectra: 464 m, 505 m, 583 m, 602 m, 722 m, 824 m, 848 w, 937 m, 981 m,1043 m, 1052 m, 1111 m, 1145 m, 1184 m, 1283 m, 1312 m, 1385 m, 1406 s, 1416 s, 1459 m,1486 s, 1574 s, 1600 s, 1630 s, 1659 s, 1748 w, 2080 w, 2134 w, 2340 w, 2445 w, 2471 w, 2619 w, 2737 w, 2797 w, 2879 m, 2953 m, 2981 m, 3177 s, 3327 s. Raman spectra: 158 s, 197 m, 258 w, 332 w, 409 w, 441 w, 476 w, 490 w, 602 m, 709 w, 736 m, 844 m, 939 s, 1042 versus, 1061 m, 1100 m, 1144 w, 1186 w, 1262 w, 1286 w, 1413 m, 1430 w, 1457 m, 1475 m, 1500 m, 1597 w, 1662 w, 1674 w, 2813 w, 2880 m, 2935 s, 2956 m, 3012 w, 3114 w,3220 w, 3294 w, 3340 w. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.31918 (18) | 0.4058 (2) | 0.08102 (5) | 0.0302 (3) | |
| C2 | 0.18235 (17) | 0.5649 (2) | 0.14924 (5) | 0.0292 (3) | |
| C3 | 0.0566 (2) | 0.8084 (3) | 0.20625 (6) | 0.0413 (4) | |
| H3A | 0.0727 | 0.6757 | 0.2300 | 0.062* | |
| H3B | −0.0587 | 0.8789 | 0.2053 | 0.062* | |
| H3C | 0.1484 | 0.9245 | 0.2179 | 0.062* | |
| C4 | −0.0215 (2) | 0.8737 (3) | 0.11244 (6) | 0.0390 (4) | |
| H4A | 0.0252 | 0.8402 | 0.0815 | 0.059* | |
| H4B | −0.0020 | 1.0386 | 0.1217 | 0.059* | |
| H4C | −0.1475 | 0.8403 | 0.1056 | 0.059* | |
| N1 | 0.47682 (16) | 0.4787 (2) | 0.10136 (5) | 0.0346 (3) | |
| H11 | 0.567 (2) | 0.428 (3) | 0.0891 (7) | 0.042* | |
| H12 | 0.497 (2) | 0.586 (3) | 0.1260 (6) | 0.042* | |
| N2 | 0.28755 (18) | 0.2669 (2) | 0.04101 (5) | 0.0356 (3) | |
| H21 | 0.372 (2) | 0.217 (3) | 0.0291 (7) | 0.043* | |
| H22 | 0.184 (2) | 0.210 (3) | 0.0295 (7) | 0.043* | |
| N3 | 0.17655 (15) | 0.4775 (2) | 0.10035 (4) | 0.0312 (3) | |
| H3 | 0.0744 (19) | 0.459 (3) | 0.0822 (6) | 0.037* | |
| N4 | 0.29198 (17) | 0.4743 (2) | 0.18829 (5) | 0.0349 (3) | |
| H41 | 0.319 (2) | 0.542 (3) | 0.2192 (6) | 0.042* | |
| H42 | 0.354 (2) | 0.357 (3) | 0.1842 (7) | 0.042* | |
| N5 | 0.06775 (15) | 0.7280 (2) | 0.15485 (4) | 0.0315 (3) | |
| N6 | 0.53721 (16) | 0.9772 (2) | 0.18120 (4) | 0.0338 (3) | |
| O1 | 0.39367 (14) | 0.9879 (2) | 0.15067 (4) | 0.0453 (3) | |
| O2 | 0.62993 (15) | 0.7999 (2) | 0.18337 (5) | 0.0505 (4) | |
| O3 | 0.58703 (17) | 1.1475 (2) | 0.21013 (4) | 0.0495 (3) | |
| N7 | 0.78091 (15) | 0.2624 (2) | 0.02958 (5) | 0.0327 (3) | |
| O4 | 0.63326 (15) | 0.1814 (2) | 0.01442 (5) | 0.0581 (4) | |
| O5 | 0.81006 (13) | 0.3970 (2) | 0.06767 (4) | 0.0412 (3) | |
| O6 | 0.90260 (14) | 0.2106 (2) | 0.00741 (4) | 0.0446 (3) |
| C1 | 0.0339 (7) | 0.0290 (7) | 0.0289 (7) | 0.0024 (6) | 0.0091 (5) | 0.0016 (5) |
| C2 | 0.0290 (7) | 0.0307 (7) | 0.0303 (7) | −0.0027 (6) | 0.0119 (5) | 0.0016 (5) |
| C3 | 0.0397 (8) | 0.0511 (10) | 0.0367 (8) | 0.0086 (7) | 0.0164 (6) | −0.0039 (7) |
| C4 | 0.0417 (8) | 0.0349 (8) | 0.0411 (8) | 0.0073 (7) | 0.0099 (6) | 0.0040 (6) |
| N1 | 0.0315 (7) | 0.0381 (7) | 0.0371 (7) | −0.0009 (5) | 0.0137 (5) | −0.0086 (5) |
| N2 | 0.0357 (7) | 0.0412 (7) | 0.0308 (6) | 0.0008 (6) | 0.0087 (5) | −0.0071 (5) |
| N3 | 0.0273 (6) | 0.0373 (7) | 0.0298 (6) | 0.0026 (5) | 0.0074 (5) | −0.0018 (5) |
| N4 | 0.0381 (7) | 0.0377 (7) | 0.0302 (6) | 0.0078 (6) | 0.0095 (5) | 0.0022 (5) |
| N5 | 0.0306 (6) | 0.0344 (6) | 0.0318 (6) | 0.0033 (5) | 0.0116 (5) | 0.0007 (5) |
| N6 | 0.0361 (7) | 0.0345 (7) | 0.0321 (6) | −0.0019 (5) | 0.0098 (5) | −0.0009 (5) |
| O1 | 0.0395 (6) | 0.0408 (7) | 0.0513 (7) | −0.0015 (5) | −0.0010 (5) | 0.0057 (5) |
| O2 | 0.0410 (7) | 0.0419 (7) | 0.0667 (8) | 0.0099 (5) | 0.0062 (5) | −0.0108 (6) |
| O3 | 0.0708 (8) | 0.0346 (6) | 0.0387 (6) | −0.0015 (6) | 0.0004 (5) | −0.0067 (5) |
| N7 | 0.0311 (6) | 0.0348 (7) | 0.0337 (6) | 0.0022 (5) | 0.0100 (5) | −0.0032 (5) |
| O4 | 0.0355 (6) | 0.0671 (8) | 0.0749 (9) | −0.0132 (6) | 0.0188 (6) | −0.0362 (7) |
| O5 | 0.0373 (6) | 0.0458 (7) | 0.0400 (6) | 0.0018 (5) | 0.0069 (4) | −0.0150 (5) |
| O6 | 0.0345 (6) | 0.0628 (8) | 0.0403 (6) | 0.0094 (5) | 0.0163 (5) | −0.0049 (5) |
| C1—N1 | 1.3060 (19) | N1—H11 | 0.878 (14) |
| C1—N2 | 1.3100 (19) | N1—H12 | 0.891 (14) |
| C1—N3 | 1.3763 (17) | N2—H21 | 0.837 (14) |
| C2—N4 | 1.3098 (18) | N2—H22 | 0.867 (14) |
| C2—N5 | 1.3212 (18) | N3—H3 | 0.849 (14) |
| C2—N3 | 1.3827 (17) | N4—H41 | 0.893 (14) |
| C3—N5 | 1.4584 (19) | N4—H42 | 0.846 (14) |
| C3—H3A | 0.9800 | N6—O2 | 1.2411 (17) |
| C3—H3B | 0.9800 | N6—O1 | 1.2428 (16) |
| C3—H3C | 0.9800 | N6—O3 | 1.2538 (16) |
| C4—N5 | 1.4601 (19) | N7—O4 | 1.2301 (16) |
| C4—H4A | 0.9800 | N7—O6 | 1.2474 (15) |
| C4—H4B | 0.9800 | N7—O5 | 1.2551 (16) |
| C4—H4C | 0.9800 | ||
| N1—C1—N2 | 122.49 (13) | H11—N1—H12 | 117.7 (16) |
| N1—C1—N3 | 120.79 (13) | C1—N2—H21 | 118.6 (12) |
| N2—C1—N3 | 116.70 (13) | C1—N2—H22 | 121.5 (12) |
| N4—C2—N5 | 122.59 (13) | H21—N2—H22 | 119.3 (18) |
| N4—C2—N3 | 119.46 (13) | C1—N3—C2 | 125.54 (12) |
| N5—C2—N3 | 117.80 (12) | C1—N3—H3 | 119.0 (12) |
| N5—C3—H3A | 109.5 | C2—N3—H3 | 115.3 (12) |
| N5—C3—H3B | 109.5 | C2—N4—H41 | 123.6 (12) |
| H3A—C3—H3B | 109.5 | C2—N4—H42 | 120.7 (12) |
| N5—C3—H3C | 109.5 | H41—N4—H42 | 115.1 (16) |
| H3A—C3—H3C | 109.5 | C2—N5—C3 | 119.81 (12) |
| H3B—C3—H3C | 109.5 | C2—N5—C4 | 123.05 (12) |
| N5—C4—H4A | 109.5 | C3—N5—C4 | 115.56 (12) |
| N5—C4—H4B | 109.5 | O2—N6—O1 | 120.59 (12) |
| H4A—C4—H4B | 109.5 | O2—N6—O3 | 120.23 (12) |
| N5—C4—H4C | 109.5 | O1—N6—O3 | 119.18 (13) |
| H4A—C4—H4C | 109.5 | O4—N7—O6 | 120.27 (12) |
| H4B—C4—H4C | 109.5 | O4—N7—O5 | 120.08 (11) |
| C1—N1—H11 | 119.7 (11) | O6—N7—O5 | 119.65 (12) |
| C1—N1—H12 | 122.4 (11) |
| H··· | ||||
| N1—H12···O2 | 0.89 (1) | 2.06 (2) | 2.9158 (17) | 160.(2) |
| N1—H12···O1 | 0.89 (1) | 2.57 (2) | 3.3151 (17) | 142.(1) |
| N1—H11···O5 | 0.88 (1) | 2.09 (2) | 2.9463 (16) | 164.(2) |
| N1—H11···O4 | 0.88 (1) | 2.57 (2) | 3.2920 (17) | 140.(1) |
| N2—H21···O4 | 0.84 (1) | 2.15 (2) | 2.9571 (18) | 161.(2) |
| N2—H21···O4i | 0.84 (1) | 2.56 (2) | 3.0833 (17) | 122.(2) |
| N2—H22···O6ii | 0.87 (1) | 2.15 (2) | 2.9674 (18) | 157.(2) |
| N2—H22···O6i | 0.87 (1) | 2.64 (2) | 3.2503 (18) | 128.(2) |
| N3—H3···O5ii | 0.85 (1) | 2.05 (2) | 2.8479 (16) | 157.(2) |
| N3—H3···O6ii | 0.85 (1) | 2.59 (2) | 3.2947 (17) | 142.(2) |
| N4—H42···O3iii | 0.85 (1) | 2.17 (2) | 2.9300 (18) | 149.(2) |
| N4—H42···O1iii | 0.85 (1) | 2.34 (2) | 3.1164 (18) | 153.(2) |
| N4—H41···O3iv | 0.89 (1) | 1.97 (2) | 2.8487 (17) | 170.(2) |
| C3—H3B···O2ii | 0.98 | 2.42 | 3.255 (2) | 143 |
| C4—H4A···O6v | 0.98 | 2.55 | 3.519 (2) | 170 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H12⋯O2 | 0.89 (1) | 2.06 (2) | 2.9158 (17) | 160 (2) |
| N1—H12⋯O1 | 0.89 (1) | 2.57 (2) | 3.3151 (17) | 142 (1) |
| N1—H11⋯O5 | 0.88 (1) | 2.09 (2) | 2.9463 (16) | 164 (2) |
| N1—H11⋯O4 | 0.88 (1) | 2.57 (2) | 3.2920 (17) | 140 (1) |
| N2—H21⋯O4 | 0.84 (1) | 2.15 (2) | 2.9571 (18) | 161 (2) |
| N2—H21⋯O4i | 0.84 (1) | 2.56 (2) | 3.0833 (17) | 122 (2) |
| N2—H22⋯O6ii | 0.87 (1) | 2.15 (2) | 2.9674 (18) | 157 (2) |
| N2—H22⋯O6i | 0.87 (1) | 2.64 (2) | 3.2503 (18) | 128 (2) |
| N3—H3⋯O5ii | 0.85 (1) | 2.05 (2) | 2.8479 (16) | 157 (2) |
| N3—H3⋯O6ii | 0.85 (1) | 2.59 (2) | 3.2947 (17) | 142 (2) |
| N4—H42⋯O3iii | 0.85 (1) | 2.17 (2) | 2.9300 (18) | 149 (2) |
| N4—H42⋯O1iii | 0.85 (1) | 2.34 (2) | 3.1164 (18) | 153 (2) |
| N4—H41⋯O3iv | 0.89 (1) | 1.97 (2) | 2.8487 (17) | 170 (2) |
| C3—H3 | 0.98 | 2.42 | 3.255 (2) | 143 |
| C4—H4 | 0.98 | 2.55 | 3.519 (2) | 170 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .