Literature DB >> 21522629

Bis(2-phenyl-biguanidium) adipate tetra-hydrate.

Irena Matulková, Ivana Císařová, Ivan Němec.   

Abstract

In the title salt, 2C(8)H(12)N(5) (+)·C(6)H(8)O(4) (2-)·4H(2)O, the anion is located on a centre of symmetry. The observed supra-molecular network of the crystal structure is produced by ten different hydrogen bonds of the N-H⋯N, N-H⋯O and O-H⋯O types. One additional O-H group is not connected to an acceptor site.

Entities:  

Year:  2010        PMID: 21522629      PMCID: PMC3050311          DOI: 10.1107/S1600536810049925

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For uses of biguanide complexes in medicine, see: Sirtori & Pasik (1994 ▶); Clement & Girreser (1999 ▶); Thompson et al. (1999 ▶); Ross et al. (2004 ▶); Woo et al. (1999 ▶); Watkins et al. (1987 ▶); Morain et al. (1994 ▶); Marchi et al. (1999 ▶); Shapiro et al. (1959a ▶,b ▶). The salts of biguanidium (1+) or (2+) cations have been tested for non-linear optical properties, see: Matulková et al. (2008 ▶, 2010 ▶); Martin et al. (1996 ▶); Martin & Pinkerton (1996 ▶); Pinkerton et al. (1978 ▶).

Experimental

Crystal data

2C8H12N5 +·C6H8O4 2−·4H2O M = 572.64 Triclinic, a = 7.1560 (1) Å b = 10.8670 (2) Å c = 11.1410 (2) Å α = 61.5590 (9)° β = 88.682 (1)° γ = 71.702 (1)° V = 714.93 (2) Å3 Z = 1 Mo Kα radiation μ = 0.10 mm−1 T = 150 K 0.4 × 0.4 × 0.3 mm

Data collection

Nonius KappaCCD area-detector diffractometer 20455 measured reflections 3260 independent reflections 2953 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.093 S = 1.06 3260 reflections 181 parameters H-atom parameters constrained Δρmax = 0.25 e Å−3 Δρmin = −0.25 e Å−3 Data collection: COLLECT (Hooft, 1998 ▶) and DENZO (Otwinowski & Minor, 1997 ▶); cell refinement: COLLECT and DENZO; data reduction: COLLECT and DENZO; program(s) used to solve structure: SIR92 (Altomare et al., 1994 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810049925/im2248sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810049925/im2248Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
2C8H12N5+·C6H8O42·4H2OZ = 1
Mr = 572.64F(000) = 306
Triclinic, P1Dx = 1.330 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.1560 (1) ÅCell parameters from 3257 reflections
b = 10.8670 (2) Åθ = 1.0–27.5°
c = 11.1410 (2) ŵ = 0.10 mm1
α = 61.5590 (9)°T = 150 K
β = 88.682 (1)°Prism, colourless
γ = 71.702 (1)°0.4 × 0.4 × 0.3 mm
V = 714.93 (2) Å3
Nonius KappaCCD area-detector diffractometer2953 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.025
graphiteθmax = 27.4°, θmin = 2.1°
Detector resolution: 9.091 pixels mm-1h = −9→9
ω and π scans to fill the Ewald spherek = −14→14
20455 measured reflectionsl = −14→14
3260 independent reflections
Refinement on F20 restraints
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.035w = 1/[σ2(Fo2) + (0.0427P)2 + 0.2629P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.093(Δ/σ)max < 0.001
S = 1.06Δρmax = 0.25 e Å3
3260 reflectionsΔρmin = −0.25 e Å3
181 parameters
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C11.08265 (15)0.19532 (11)0.51868 (10)0.0166 (2)
C21.02860 (14)0.43683 (11)0.33714 (10)0.0157 (2)
N11.01068 (14)0.10880 (10)0.62783 (9)0.0198 (2)
H10.99660.33560.23760.024*
N21.23411 (14)0.12406 (10)0.47705 (10)0.0211 (2)
H2A1.29270.02110.53520.025*
H2B1.30120.17500.41910.025*
N31.00775 (13)0.34344 (10)0.46586 (9)0.01745 (19)
N41.03596 (14)0.56792 (10)0.31118 (9)0.0205 (2)
H4A1.02680.59290.37790.025*
H4B1.03570.64230.22360.025*
N51.03464 (14)0.40864 (10)0.23239 (9)0.01899 (19)
H5A1.07840.00480.67490.023*
H5B1.03040.48750.14790.023*
C30.83808 (15)0.16121 (11)0.67987 (11)0.0170 (2)
C40.85199 (17)0.11060 (13)0.82069 (11)0.0232 (2)
H40.97390.04890.87760.028*
C50.68398 (18)0.15191 (14)0.87700 (12)0.0262 (2)
H50.69380.11750.97150.031*
C60.50251 (17)0.24393 (13)0.79302 (13)0.0246 (2)
H60.39000.27080.83080.030*
C70.48929 (17)0.29590 (14)0.65196 (13)0.0289 (3)
H70.36780.35910.59500.035*
C80.65620 (17)0.25428 (14)0.59510 (12)0.0251 (2)
H80.64610.28860.50060.030*
C90.65021 (15)0.26120 (11)0.25517 (10)0.0159 (2)
C100.55128 (16)0.42815 (11)0.19755 (11)0.0185 (2)
H10A0.61860.45950.24670.022*
H10B0.41420.44880.21430.022*
C110.55403 (16)0.51991 (11)0.04279 (10)0.0180 (2)
H11A0.49140.62500.01330.022*
H11B0.69100.50300.02600.022*
O10.82344 (11)0.21203 (8)0.23165 (8)0.02091 (18)
O20.55463 (12)0.17812 (8)0.32638 (8)0.02243 (18)
O1W0.98182 (13)0.70284 (10)0.00316 (8)0.0287 (2)
H111.04940.7325−0.06190.034*
H120.85520.7580−0.04620.034*
O2W0.40159 (15)0.11820 (11)0.13910 (10)0.0353 (2)
H210.42000.02160.18210.042*
H220.45040.12200.21380.042*
U11U22U33U12U13U23
C10.0182 (5)0.0161 (5)0.0150 (5)−0.0064 (4)0.0028 (4)−0.0069 (4)
C20.0126 (4)0.0157 (5)0.0168 (5)−0.0042 (4)0.0033 (4)−0.0070 (4)
N10.0214 (4)0.0130 (4)0.0193 (4)−0.0042 (3)0.0081 (4)−0.0049 (3)
N20.0208 (5)0.0142 (4)0.0214 (4)−0.0042 (3)0.0091 (4)−0.0050 (4)
N30.0211 (4)0.0142 (4)0.0158 (4)−0.0063 (3)0.0057 (3)−0.0065 (3)
N40.0296 (5)0.0158 (4)0.0166 (4)−0.0101 (4)0.0067 (4)−0.0071 (4)
N50.0246 (5)0.0182 (4)0.0151 (4)−0.0103 (4)0.0043 (3)−0.0073 (3)
C30.0197 (5)0.0140 (5)0.0186 (5)−0.0077 (4)0.0064 (4)−0.0080 (4)
C40.0222 (5)0.0234 (5)0.0182 (5)−0.0051 (4)0.0024 (4)−0.0075 (4)
C50.0303 (6)0.0293 (6)0.0185 (5)−0.0092 (5)0.0081 (4)−0.0124 (5)
C60.0229 (5)0.0248 (6)0.0299 (6)−0.0083 (4)0.0110 (5)−0.0166 (5)
C70.0195 (6)0.0327 (6)0.0277 (6)−0.0031 (5)0.0016 (5)−0.0133 (5)
C80.0236 (6)0.0303 (6)0.0171 (5)−0.0069 (5)0.0026 (4)−0.0099 (5)
C90.0177 (5)0.0159 (5)0.0121 (4)−0.0055 (4)0.0011 (4)−0.0055 (4)
C100.0194 (5)0.0152 (5)0.0176 (5)−0.0041 (4)0.0027 (4)−0.0068 (4)
C110.0199 (5)0.0132 (5)0.0171 (5)−0.0053 (4)0.0013 (4)−0.0047 (4)
O10.0181 (4)0.0159 (4)0.0228 (4)−0.0045 (3)0.0060 (3)−0.0061 (3)
O20.0218 (4)0.0176 (4)0.0228 (4)−0.0080 (3)0.0078 (3)−0.0056 (3)
O1W0.0340 (5)0.0277 (4)0.0182 (4)−0.0116 (4)0.0084 (3)−0.0063 (3)
O2W0.0436 (5)0.0304 (5)0.0366 (5)−0.0187 (4)0.0049 (4)−0.0164 (4)
C1—N21.3347 (13)C5—H50.9300
C1—N31.3397 (13)C6—C71.3877 (17)
C1—N11.3469 (13)C6—H60.9300
C2—N41.3303 (13)C7—C81.3897 (16)
C2—N51.3370 (13)C7—H70.9300
C2—N31.3445 (13)C8—H80.9300
N1—C31.4233 (13)C9—O21.2622 (13)
N1—H5A0.9432C9—O11.2623 (13)
N2—H2A0.9353C9—C101.5198 (14)
N2—H2B0.8755C10—C111.5299 (14)
N4—H4A0.8999C10—H10A0.9700
N4—H4B0.9233C10—H10B0.9700
N5—H10.8934C11—C11i1.527 (2)
N5—H5B0.9158C11—H11A0.9700
C3—C41.3874 (15)C11—H11B0.9700
C3—C81.3888 (15)O1W—H110.8499
C4—C51.3911 (16)O1W—H120.9225
C4—H40.9300O2W—H210.8864
C5—C61.3824 (17)O2W—H220.9334
N2—C1—N3124.93 (9)C4—C5—H5119.9
N2—C1—N1116.20 (9)C5—C6—C7119.57 (10)
N3—C1—N1118.73 (9)C5—C6—H6120.2
N4—C2—N5117.95 (9)C7—C6—H6120.2
N4—C2—N3117.89 (9)C6—C7—C8120.50 (11)
N5—C2—N3124.12 (9)C6—C7—H7119.8
C1—N1—C3125.27 (9)C8—C7—H7119.8
C1—N1—H5A118.6C3—C8—C7119.77 (10)
C3—N1—H5A116.1C3—C8—H8120.1
C1—N2—H2A116.5C7—C8—H8120.1
C1—N2—H2B118.5O2—C9—O1123.20 (9)
H2A—N2—H2B120.5O2—C9—C10117.75 (9)
C1—N3—C2121.23 (9)O1—C9—C10119.03 (9)
C2—N4—H4A120.7C9—C10—C11113.44 (8)
C2—N4—H4B123.1C9—C10—H10A108.9
H4A—N4—H4B115.8C11—C10—H10A108.9
C2—N5—H1121.2C9—C10—H10B108.9
C2—N5—H5B114.6C11—C10—H10B108.9
H1—N5—H5B119.8H10A—C10—H10B107.7
C4—C3—C8119.78 (10)C11i—C11—C10112.27 (11)
C4—C3—N1118.26 (10)C11i—C11—H11A109.2
C8—C3—N1121.87 (10)C10—C11—H11A109.2
C3—C4—C5120.12 (11)C11i—C11—H11B109.2
C3—C4—H4119.9C10—C11—H11B109.2
C5—C4—H4119.9H11A—C11—H11B107.9
C6—C5—C4120.25 (11)H11—O1W—H1299.6
C6—C5—H5119.9H21—O2W—H2297.8
D—H···AD—HH···AD···AD—H···A
N5—H1···O10.892.122.982 (1)163
N2—H2A···O2ii0.941.922.837 (1)168
N2—H2B···O2iii0.882.072.855 (1)149
N4—H4A···N3iv0.902.143.041 (1)178
N4—H4B···O1W0.922.232.998 (1)141
N1—H5A···O1ii0.941.952.882 (1)171
N5—H5B···O1W0.922.032.897 (1)158
O1W—H11···O1v0.851.992.825 (1)168
O1W—H12···O2Wi0.921.862.781 (1)174
O2W—H22···O20.931.892.797 (1)165
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N5—H1⋯O10.892.122.982 (1)163
N2—H2A⋯O2i0.941.922.837 (1)168
N2—H2B⋯O2ii0.882.072.855 (1)149
N4—H4A⋯N3iii0.902.143.041 (1)178
N4—H4B⋯O1W0.922.232.998 (1)141
N1—H5A⋯O1i0.941.952.882 (1)171
N5—H5B⋯O1W0.922.032.897 (1)158
O1W—H11⋯O1iv0.851.992.825 (1)168
O1W—H12⋯O2Wv0.921.862.781 (1)174
O2W—H22⋯O20.931.892.797 (1)165

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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