Literature DB >> 22259414

(Z)-Ethyl 2-(2,4-dimethyl-benzyl-idene)-7-methyl-3-oxo-5-phenyl-3,5-dihydro-2H-thia-zolo[3,2-a]pyrimidine-6-carboxyl-ate.

Xiao-Yan Chen, Han-Chu Wang, Qian Zhang, Zhi-Jian Song, Fei-Yun Zheng.   

Abstract

In the title compound, C(25)H(24)N(2)O(3)S, the dihedral angles between the thia-zole ring and the phenyl and substituted benzene rings are 84.91 (11) and 11.58 (10)°, respectively. The dihydro-pyrimidine ring adopts a flattened boat conformation. The olefinic double bond is in a Z configuration.

Entities:  

Year:  2011        PMID: 22259414      PMCID: PMC3254473          DOI: 10.1107/S1600536811052925

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Kulakov et al. (2009 ▶); Zhao et al. (2011 ▶). For background to the biological properties of fused pyrimidine derivatives, see: Al-Rashood & Abdel-Aziz (2010 ▶); Ashok et al. (2007 ▶); Jang et al. (2011 ▶); Wichmann et al. (1999 ▶).

Experimental

Crystal data

C25H24N2O3S M = 432.52 Monoclinic, a = 9.690 (5) Å b = 10.620 (5) Å c = 21.692 (12) Å β = 90.682 (10)° V = 2232 (2) Å3 Z = 4 Mo Kα radiation μ = 0.17 mm−1 T = 293 K 0.32 × 0.27 × 0.16 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2002 ▶) T min = 0.675, T max = 1.000 8761 measured reflections 4257 independent reflections 3096 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.155 S = 1.01 4257 reflections 284 parameters H-atom parameters constrained Δρmax = 0.31 e Å−3 Δρmin = −0.26 e Å−3 Data collection: SMART (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811052925/rn2098sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811052925/rn2098Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811052925/rn2098Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C25H24N2O3SF(000) = 912
Mr = 432.52Dx = 1.287 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
a = 9.690 (5) ÅCell parameters from 2729 reflections
b = 10.620 (5) Åθ = 5.4–56.3°
c = 21.692 (12) ŵ = 0.17 mm1
β = 90.682 (10)°T = 293 K
V = 2232 (2) Å3Prismatic, green
Z = 40.32 × 0.27 × 0.16 mm
Bruker SMART CCD area-detector diffractometer4257 independent reflections
Radiation source: fine-focus sealed tube3096 reflections with I > 2σ(I)
graphiteRint = 0.026
phi and ω scansθmax = 26.0°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Bruker, 2002)h = −11→11
Tmin = 0.675, Tmax = 1.000k = −13→11
8761 measured reflectionsl = −15→26
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.050Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.155H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.0949P)2] where P = (Fo2 + 2Fc2)/3
4257 reflections(Δ/σ)max = 0.003
284 parametersΔρmax = 0.31 e Å3
0 restraintsΔρmin = −0.26 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.39630 (6)0.68577 (5)1.02581 (2)0.0468 (2)
N10.51571 (17)0.71961 (14)0.92082 (7)0.0387 (4)
N20.58867 (19)0.85690 (16)1.00033 (8)0.0473 (4)
O10.43929 (16)0.55550 (13)0.86185 (6)0.0527 (4)
O20.8683 (2)1.0158 (2)0.86481 (10)0.0999 (7)
O30.78414 (18)0.86963 (17)0.80152 (7)0.0651 (5)
C10.4398 (2)0.61190 (18)0.91047 (9)0.0397 (5)
C20.3609 (2)0.57762 (18)0.96664 (9)0.0402 (5)
C30.5139 (2)0.76745 (18)0.97952 (9)0.0412 (5)
C40.6868 (2)0.90740 (19)0.95937 (10)0.0472 (5)
C50.6901 (2)0.87651 (19)0.89920 (10)0.0461 (5)
C60.5836 (2)0.78885 (18)0.87051 (9)0.0422 (5)
H60.63120.72810.84420.051*
C70.4768 (2)0.8581 (2)0.83166 (9)0.0440 (5)
C80.4347 (3)0.8122 (2)0.77469 (10)0.0634 (7)
H80.47380.73890.75920.076*
C90.3338 (3)0.8758 (3)0.74073 (11)0.0804 (9)
H90.30560.84450.70260.097*
C100.2761 (3)0.9832 (3)0.76279 (13)0.0779 (8)
H100.20891.02530.73980.093*
C110.3176 (3)1.0286 (3)0.81878 (13)0.0758 (8)
H110.27801.10180.83410.091*
C120.4174 (3)0.9670 (2)0.85291 (11)0.0588 (6)
H120.44510.99960.89090.071*
C130.7847 (3)0.9961 (2)0.99124 (12)0.0617 (6)
H13A0.87500.98710.97410.093*
H13B0.78830.97701.03450.093*
H13C0.75331.08110.98550.093*
C140.7908 (2)0.9298 (2)0.85547 (12)0.0584 (6)
C150.8700 (3)0.9143 (3)0.75156 (13)0.0813 (9)
H15A0.96390.92760.76610.098*
H15B0.83460.99330.73540.098*
C160.8664 (4)0.8162 (4)0.70314 (14)0.1146 (14)
H16A0.90100.73850.71980.172*
H16B0.92270.84200.66930.172*
H16C0.77300.80450.68890.172*
C170.2755 (2)0.47861 (18)0.96532 (9)0.0441 (5)
H170.27440.43520.92810.053*
C180.1845 (2)0.42670 (18)1.01130 (9)0.0431 (5)
C190.0866 (2)0.33502 (19)0.99376 (10)0.0473 (5)
C20−0.0026 (2)0.2895 (2)1.03827 (11)0.0540 (6)
H20−0.06800.22981.02650.065*
C210.0007 (2)0.3284 (2)1.09903 (11)0.0536 (6)
C220.0988 (3)0.4159 (2)1.11590 (11)0.0581 (6)
H220.10480.44261.15670.070*
C230.1885 (2)0.4647 (2)1.07309 (10)0.0531 (6)
H230.25330.52431.08560.064*
C240.0761 (3)0.2857 (2)0.92891 (11)0.0661 (7)
H24A0.00260.22530.92610.099*
H24B0.16150.24610.91800.099*
H24C0.05750.35410.90110.099*
C25−0.1005 (3)0.2774 (3)1.14450 (13)0.0756 (8)
H25A−0.18770.31911.13900.113*
H25B−0.06660.29201.18560.113*
H25C−0.11210.18861.13800.113*
U11U22U33U12U13U23
S10.0540 (4)0.0431 (3)0.0435 (3)−0.0012 (2)0.0112 (2)−0.0006 (2)
N10.0400 (10)0.0354 (8)0.0408 (8)−0.0022 (7)0.0049 (7)0.0019 (7)
N20.0497 (11)0.0405 (9)0.0519 (10)−0.0045 (8)0.0026 (8)−0.0055 (8)
O10.0612 (10)0.0505 (8)0.0468 (8)−0.0109 (8)0.0111 (7)−0.0067 (7)
O20.0972 (16)0.0951 (15)0.1080 (16)−0.0585 (13)0.0217 (13)−0.0015 (12)
O30.0577 (11)0.0771 (11)0.0608 (10)−0.0177 (9)0.0164 (8)0.0117 (9)
C10.0376 (12)0.0378 (11)0.0438 (10)0.0017 (9)0.0021 (9)0.0017 (8)
C20.0400 (12)0.0369 (10)0.0439 (10)0.0044 (9)0.0060 (9)0.0021 (8)
C30.0415 (12)0.0366 (10)0.0456 (10)0.0046 (9)0.0022 (9)−0.0005 (8)
C40.0413 (12)0.0371 (11)0.0632 (13)−0.0003 (9)−0.0019 (10)−0.0001 (9)
C50.0373 (12)0.0406 (11)0.0603 (13)−0.0037 (9)0.0015 (10)0.0049 (9)
C60.0418 (12)0.0397 (10)0.0452 (10)−0.0054 (9)0.0100 (9)0.0007 (8)
C70.0407 (12)0.0499 (12)0.0415 (10)−0.0111 (10)0.0068 (9)0.0074 (9)
C80.0696 (18)0.0719 (16)0.0489 (12)−0.0138 (14)0.0042 (12)−0.0001 (11)
C90.081 (2)0.114 (2)0.0459 (13)−0.025 (2)−0.0126 (13)0.0155 (15)
C100.0650 (18)0.099 (2)0.0694 (17)−0.0022 (17)−0.0061 (14)0.0363 (16)
C110.0722 (19)0.0745 (18)0.0805 (18)0.0164 (15)−0.0016 (15)0.0167 (14)
C120.0576 (15)0.0614 (15)0.0575 (13)0.0065 (12)−0.0022 (11)0.0037 (11)
C130.0550 (15)0.0507 (13)0.0792 (16)−0.0102 (11)−0.0052 (12)−0.0043 (12)
C140.0442 (14)0.0568 (14)0.0743 (16)−0.0075 (12)0.0021 (12)0.0128 (12)
C150.0662 (18)0.104 (2)0.0741 (17)−0.0152 (16)0.0208 (14)0.0375 (16)
C160.136 (3)0.149 (3)0.0596 (17)−0.023 (3)0.036 (2)0.0160 (19)
C170.0451 (12)0.0391 (11)0.0481 (11)0.0002 (9)0.0053 (9)0.0026 (9)
C180.0418 (12)0.0353 (10)0.0522 (11)0.0026 (9)0.0071 (9)0.0063 (9)
C190.0460 (13)0.0367 (10)0.0593 (12)0.0020 (9)0.0045 (10)0.0072 (9)
C200.0431 (13)0.0434 (12)0.0756 (15)−0.0036 (10)0.0054 (11)0.0103 (11)
C210.0441 (14)0.0498 (13)0.0672 (14)0.0066 (11)0.0131 (11)0.0167 (11)
C220.0598 (15)0.0613 (14)0.0533 (13)−0.0009 (12)0.0116 (11)0.0082 (11)
C230.0547 (14)0.0499 (12)0.0548 (12)−0.0096 (11)0.0084 (10)0.0041 (10)
C240.0727 (18)0.0569 (14)0.0688 (15)−0.0175 (13)0.0074 (13)−0.0034 (12)
C250.0597 (17)0.0840 (18)0.0836 (18)−0.0012 (15)0.0216 (14)0.0293 (15)
S1—C21.753 (2)C12—H120.9300
S1—C31.757 (2)C13—H13A0.9600
N1—C31.371 (3)C13—H13B0.9600
N1—C11.377 (3)C13—H13C0.9600
N1—C61.477 (2)C15—C161.480 (4)
N2—C31.274 (3)C15—H15A0.9700
N2—C41.415 (3)C15—H15B0.9700
O1—C11.213 (2)C16—H16A0.9600
O2—C141.198 (3)C16—H16B0.9600
O3—C141.334 (3)C16—H16C0.9600
O3—C151.454 (3)C17—C181.448 (3)
C1—C21.491 (3)C17—H170.9300
C2—C171.338 (3)C18—C231.400 (3)
C4—C51.347 (3)C18—C191.409 (3)
C4—C131.500 (3)C19—C201.390 (3)
C5—C141.481 (3)C19—C241.504 (3)
C5—C61.518 (3)C20—C211.381 (3)
C6—C71.517 (3)C20—H200.9300
C6—H60.9800C21—C221.376 (3)
C7—C121.374 (3)C21—C251.501 (3)
C7—C81.385 (3)C22—C231.380 (3)
C8—C91.392 (4)C22—H220.9300
C8—H80.9300C23—H230.9300
C9—C101.360 (4)C24—H24A0.9600
C9—H90.9300C24—H24B0.9600
C10—C111.363 (4)C24—H24C0.9600
C10—H100.9300C25—H25A0.9600
C11—C121.377 (3)C25—H25B0.9600
C11—H110.9300C25—H25C0.9600
C2—S1—C391.59 (10)H13B—C13—H13C109.5
C3—N1—C1116.53 (16)O2—C14—O3122.5 (2)
C3—N1—C6120.82 (16)O2—C14—C5126.8 (2)
C1—N1—C6122.33 (16)O3—C14—C5110.7 (2)
C3—N2—C4116.34 (17)O3—C15—C16106.9 (2)
C14—O3—C15118.4 (2)O3—C15—H15A110.3
O1—C1—N1123.26 (18)C16—C15—H15A110.3
O1—C1—C2126.39 (19)O3—C15—H15B110.3
N1—C1—C2110.34 (16)C16—C15—H15B110.3
C17—C2—C1119.81 (18)H15A—C15—H15B108.6
C17—C2—S1130.25 (16)C15—C16—H16A109.5
C1—C2—S1109.90 (14)C15—C16—H16B109.5
N2—C3—N1126.29 (19)H16A—C16—H16B109.5
N2—C3—S1122.38 (16)C15—C16—H16C109.5
N1—C3—S1111.30 (15)H16A—C16—H16C109.5
C5—C4—N2122.71 (19)H16B—C16—H16C109.5
C5—C4—C13125.3 (2)C2—C17—C18131.74 (19)
N2—C4—C13112.00 (19)C2—C17—H17114.1
C4—C5—C14123.4 (2)C18—C17—H17114.1
C4—C5—C6121.52 (19)C23—C18—C19117.94 (19)
C14—C5—C6114.95 (19)C23—C18—C17122.7 (2)
N1—C6—C7110.19 (17)C19—C18—C17119.39 (19)
N1—C6—C5108.00 (16)C20—C19—C18118.4 (2)
C7—C6—C5112.74 (17)C20—C19—C24119.5 (2)
N1—C6—H6108.6C18—C19—C24122.1 (2)
C7—C6—H6108.6C21—C20—C19123.4 (2)
C5—C6—H6108.6C21—C20—H20118.3
C12—C7—C8118.4 (2)C19—C20—H20118.3
C12—C7—C6120.47 (18)C22—C21—C20117.6 (2)
C8—C7—C6121.1 (2)C22—C21—C25121.6 (2)
C7—C8—C9119.9 (3)C20—C21—C25120.7 (2)
C7—C8—H8120.0C21—C22—C23120.9 (2)
C9—C8—H8120.0C21—C22—H22119.6
C10—C9—C8120.7 (3)C23—C22—H22119.6
C10—C9—H9119.7C22—C23—C18121.7 (2)
C8—C9—H9119.7C22—C23—H23119.1
C9—C10—C11119.5 (3)C18—C23—H23119.1
C9—C10—H10120.3C19—C24—H24A109.5
C11—C10—H10120.3C19—C24—H24B109.5
C10—C11—C12120.6 (3)H24A—C24—H24B109.5
C10—C11—H11119.7C19—C24—H24C109.5
C12—C11—H11119.7H24A—C24—H24C109.5
C7—C12—C11120.9 (2)H24B—C24—H24C109.5
C7—C12—H12119.5C21—C25—H25A109.5
C11—C12—H12119.5C21—C25—H25B109.5
C4—C13—H13A109.5H25A—C25—H25B109.5
C4—C13—H13B109.5C21—C25—H25C109.5
H13A—C13—H13B109.5H25A—C25—H25C109.5
C4—C13—H13C109.5H25B—C25—H25C109.5
H13A—C13—H13C109.5
C3—N1—C1—O1−175.24 (19)N1—C6—C7—C8−102.7 (2)
C6—N1—C1—O111.3 (3)C5—C6—C7—C8136.6 (2)
C3—N1—C1—C25.0 (2)C12—C7—C8—C9−0.5 (3)
C6—N1—C1—C2−168.54 (17)C6—C7—C8—C9178.3 (2)
O1—C1—C2—C17−2.7 (3)C7—C8—C9—C100.2 (4)
N1—C1—C2—C17177.07 (17)C8—C9—C10—C11−0.1 (4)
O1—C1—C2—S1179.15 (18)C9—C10—C11—C120.2 (4)
N1—C1—C2—S1−1.1 (2)C8—C7—C12—C110.6 (3)
C3—S1—C2—C17−180.0 (2)C6—C7—C12—C11−178.1 (2)
C3—S1—C2—C1−2.08 (15)C10—C11—C12—C7−0.5 (4)
C4—N2—C3—N1−2.9 (3)C15—O3—C14—O2−2.9 (4)
C4—N2—C3—S1174.98 (15)C15—O3—C14—C5176.3 (2)
C1—N1—C3—N2171.51 (19)C4—C5—C14—O2−10.0 (4)
C6—N1—C3—N2−14.9 (3)C6—C5—C14—O2166.5 (2)
C1—N1—C3—S1−6.6 (2)C4—C5—C14—O3170.8 (2)
C6—N1—C3—S1166.99 (14)C6—C5—C14—O3−12.6 (3)
C2—S1—C3—N2−173.40 (18)C14—O3—C15—C16167.7 (3)
C2—S1—C3—N14.81 (15)C1—C2—C17—C18−177.9 (2)
C3—N2—C4—C59.0 (3)S1—C2—C17—C18−0.2 (4)
C3—N2—C4—C13−170.39 (18)C2—C17—C18—C23−11.2 (4)
N2—C4—C5—C14179.09 (19)C2—C17—C18—C19168.2 (2)
C13—C4—C5—C14−1.6 (4)C23—C18—C19—C201.5 (3)
N2—C4—C5—C62.8 (3)C17—C18—C19—C20−177.96 (19)
C13—C4—C5—C6−178.0 (2)C23—C18—C19—C24−178.5 (2)
C3—N1—C6—C7−100.3 (2)C17—C18—C19—C242.0 (3)
C1—N1—C6—C773.0 (2)C18—C19—C20—C21−0.8 (3)
C3—N1—C6—C523.3 (3)C24—C19—C20—C21179.2 (2)
C1—N1—C6—C5−163.48 (17)C19—C20—C21—C22−0.6 (3)
C4—C5—C6—N1−17.7 (3)C19—C20—C21—C25178.7 (2)
C14—C5—C6—N1165.70 (18)C20—C21—C22—C231.3 (3)
C4—C5—C6—C7104.3 (2)C25—C21—C22—C23−178.0 (2)
C14—C5—C6—C7−72.3 (2)C21—C22—C23—C18−0.6 (4)
N1—C6—C7—C1276.0 (2)C19—C18—C23—C22−0.9 (3)
C5—C6—C7—C12−44.7 (3)C17—C18—C23—C22178.6 (2)
  6 in total

1.  Convenient one pot synthesis of some novel derivatives of thiazolo[2,3-b]dihydropyrimidinone possessing 4-methylthiophenyl moiety and evaluation of their antibacterial and antifungal activities.

Authors:  Mithun Ashok; Bantwal Shivarama Holla; Nalilu Suchetha Kumari
Journal:  Eur J Med Chem       Date:  2006-10-27       Impact factor: 6.514

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Structure-activity relationships of substituted 5H-thiazolo[3,2-a]pyrimidines as group 2 metabotropic glutamate receptor antagonists.

Authors:  J Wichmann; G Adam; S Kolczewski; V Mutel; T Woltering
Journal:  Bioorg Med Chem Lett       Date:  1999-06-07       Impact factor: 2.823

4.  Discovery of 7-N-piperazinylthiazolo[5,4-d]pyrimidine analogues as a novel class of immunosuppressive agents with in vivo biological activity.

Authors:  Mi-Yeon Jang; Yuan Lin; Steven De Jonghe; Ling-Jie Gao; Bart Vanderhoydonck; Mathy Froeyen; Jef Rozenski; Jean Herman; Thierry Louat; Kristien Van Belle; Mark Waer; Piet Herdewijn
Journal:  J Med Chem       Date:  2010-12-20       Impact factor: 7.446

5.  Ethyl (Z)-2-(2-fluoro-benzyl-idene)-7-methyl-3-oxo-5-phenyl-3,5-dihydro-2H-thia-zolo[3,2-a]pyrimidine-6-carboxyl-ate.

Authors:  Cheng-Guang Zhao; Jie Hu; Ya-Li Zhang; Jing Zhang; Shu-Lin Yang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-10-22

Review 6.  Thiazolo[3,2-a]benzimidazoles: synthetic strategies, chemical transformations and biological activities.

Authors:  Khalid A Al-Rashood; Hatem A Abdel-Aziz
Journal:  Molecules       Date:  2010-05-26       Impact factor: 4.411

  6 in total
  1 in total

1.  Ethyl 7-methyl-3-oxo-5-phenyl-2-(2,4,6-trimeth-oxy-benzyl-idene)-2,3-dihydro-5H-thia-zolo[3,2-a]pyrimidine-6-carboxyl-ate.

Authors:  Noor Afshan Banu; V Bheema Raju
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-28
  1 in total

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