Literature DB >> 22259344

{N-[1-(1H-Benzimidazol-2-yl)ethyl-idene-κN]-3-(1H-imidazol-1-yl)propan-1-amine-κN}dibromidomercury(II).

Qing Wang1, Zhong-Ye Fu, Liang-Min Yu.   

Abstract

In the title compound, [HgBr(2)(class="Disease">C(15)H(17)N(5))], the Hg(II) ion is class="Gene">pan class="Species">tetra-hedrally coordinated by two N atoms of the N-[1-(1H-benzimidazol-2-yl)ethyl-idene-κN]-3-(1H-imidazol-1-yl)propan-1-amine ligand, and two bromide anions. Inter-molecular benzimidazole-imidazole N-H⋯N hydrogen bonds link the mol-ecules into helical chains along the b-axis direction and C-H⋯Br hydrogen bonds link these chains into layers parallel to the bc plane.

Entities:  

Year:  2011        PMID: 22259344      PMCID: PMC3254313          DOI: 10.1107/S1600536811051166

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to the design and synthesis of coordination class="Chemical">polymers, see: Moulton & Zaworotko (2001 ▶); Roesky & Andruh (2003 ▶); Li et al. (2007 ▶); Zheng et al. (2011 ▶). For complexes with ligands containing class="Gene">pan class="Chemical">benzimidazole or imidazole, see: Pan et al. (2010 ▶); Chen et al. (2007 ▶); Zhuang et al. (2009 ▶); Wang et al. (2009 ▶).

Experimental

Crystal data

[HgBr2(C15H17N5)] M = 627.75 Monoclinic, a = 10.3054 (4) Å b = 10.6680 (4) Å c = 16.6030 (5) Å β = 100.844 (3)° V = 1792.71 (11) Å3 Z = 4 Mo Kα radiation μ = 13.05 mm−1 T = 298 K 0.37 × 0.33 × 0.30 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.086, T max = 0.111 9489 measured reflections 3891 independent reflections 2302 reflections with I > 2σ(I) R int = 0.047

Refinement

R[F 2 > 2σ(F 2)] = 0.031 wR(F 2) = 0.041 S = 0.93 3891 reflections 208 parameters H-atom parameters constrained Δρmax = 1.45 e Å−3 Δρmin = −0.96 e Å−3 Data collection: pan class="Gene">APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT (Bruker, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811051166/kp2360sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811051166/kp2360Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[HgBr2(C15H17N5)]Z = 4
Mr = 627.75F(000) = 1168
Monoclinic, P21/cDx = 2.326 Mg m3
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 10.3054 (4) Åθ = 2.8–27°
b = 10.6680 (4) ŵ = 13.05 mm1
c = 16.6030 (5) ÅT = 298 K
β = 100.844 (3)°Block, colourless
V = 1792.71 (11) Å30.37 × 0.33 × 0.30 mm
Bruker SMART APEXII CCD area-detector diffractometer3891 independent reflections
Radiation source: fine-focus sealed tube2302 reflections with I > 2σ(I)
graphiteRint = 0.047
phi and ω scansθmax = 27.0°, θmin = 2.8°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −13→13
Tmin = 0.086, Tmax = 0.111k = −13→12
9489 measured reflectionsl = −21→20
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.031Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.041H-atom parameters constrained
S = 0.93w = 1/[σ2(Fo2) + (0.P)2] where P = (Fo2 + 2Fc2)/3
3891 reflections(Δ/σ)max = 0.003
208 parametersΔρmax = 1.45 e Å3
0 restraintsΔρmin = −0.96 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Hg10.28943 (2)1.69192 (2)1.065782 (13)0.02437 (7)
Br20.09981 (6)1.80104 (7)1.10987 (3)0.03381 (17)
Br10.34657 (6)1.46862 (6)1.11412 (3)0.03254 (18)
N30.2664 (4)1.6902 (5)0.9191 (2)0.0196 (11)
N10.4643 (4)1.7966 (4)1.0326 (2)0.0153 (11)
C70.4677 (5)1.7955 (6)0.9526 (3)0.0220 (14)
C10.5760 (5)1.8564 (5)1.0723 (3)0.0164 (14)
C60.6472 (6)1.8935 (5)1.0109 (3)0.0179 (14)
C90.3613 (6)1.7408 (5)0.8910 (3)0.0176 (14)
C100.1465 (5)1.6394 (5)0.8673 (3)0.0242 (16)
H10A0.16171.62870.81180.029*
H10B0.07461.69860.86560.029*
N40.2183 (5)1.3873 (4)0.8074 (3)0.0210 (12)
N20.5751 (4)1.8553 (4)0.9374 (3)0.0204 (12)
H2B0.59491.86740.89000.025*
N50.3055 (5)1.3730 (4)0.6951 (3)0.0264 (13)
C20.6247 (6)1.8854 (5)1.1536 (3)0.0242 (16)
H2A0.57761.86461.19430.029*
C50.7670 (6)1.9576 (6)1.0293 (3)0.0259 (16)
H5A0.81231.98280.98860.031*
C80.3749 (5)1.7525 (5)0.8032 (3)0.0225 (15)
H8A0.30031.71400.76870.034*
H8B0.45451.71140.79530.034*
H8C0.37881.83950.78910.034*
C40.8144 (6)1.9815 (5)1.1109 (4)0.0318 (18)
H4A0.89502.02231.12600.038*
C150.3258 (6)1.4068 (5)0.7735 (3)0.0252 (16)
H15A0.40491.44000.80170.030*
C140.1767 (6)1.3299 (5)0.6795 (3)0.0250 (16)
H14A0.13281.29970.62920.030*
C30.7431 (6)1.9453 (6)1.1726 (3)0.0295 (17)
H3A0.77821.96301.22720.035*
C130.1234 (6)1.3376 (5)0.7478 (3)0.0272 (17)
H13A0.03861.31380.75310.033*
C110.1081 (5)1.5158 (5)0.8992 (3)0.0198 (14)
H11A0.02211.49150.86860.024*
H11B0.10071.52530.95620.024*
C120.2065 (6)1.4126 (5)0.8924 (3)0.0268 (16)
H12A0.29231.43640.92340.032*
H12B0.17911.33660.91650.032*
U11U22U33U12U13U23
Hg10.02425 (14)0.03019 (14)0.01982 (12)0.00036 (16)0.00710 (9)0.00116 (13)
Br20.0283 (4)0.0368 (4)0.0408 (4)0.0044 (4)0.0179 (3)0.0032 (4)
Br10.0381 (5)0.0283 (4)0.0284 (4)0.0013 (3)−0.0008 (3)0.0050 (3)
N30.026 (3)0.020 (3)0.014 (2)0.001 (3)0.006 (2)−0.002 (2)
N10.019 (3)0.015 (3)0.014 (2)0.003 (3)0.008 (2)0.000 (2)
C70.021 (4)0.028 (4)0.017 (3)0.004 (3)0.002 (3)0.004 (3)
C10.013 (4)0.011 (3)0.023 (3)0.003 (3)−0.003 (3)0.006 (3)
C60.016 (4)0.013 (4)0.025 (4)0.000 (3)0.005 (3)0.001 (3)
C90.018 (4)0.016 (3)0.018 (3)0.014 (3)0.002 (3)0.002 (3)
C100.026 (4)0.035 (4)0.011 (3)0.008 (3)0.001 (3)0.003 (3)
N40.016 (3)0.026 (3)0.022 (3)−0.005 (3)0.008 (2)0.000 (2)
N20.016 (3)0.027 (3)0.021 (3)0.001 (2)0.012 (2)0.004 (2)
N50.029 (4)0.030 (3)0.021 (3)−0.003 (3)0.008 (3)−0.001 (2)
C20.027 (4)0.026 (4)0.021 (4)0.004 (3)0.006 (3)−0.005 (3)
C50.028 (4)0.029 (4)0.022 (3)0.010 (3)0.010 (3)0.004 (3)
C80.024 (4)0.027 (4)0.017 (3)0.000 (3)0.004 (3)−0.003 (3)
C40.020 (4)0.017 (4)0.055 (5)−0.004 (3)−0.002 (4)0.006 (3)
C150.016 (4)0.028 (4)0.027 (4)−0.002 (3)−0.006 (3)−0.004 (3)
C140.025 (4)0.033 (4)0.016 (3)−0.008 (3)0.001 (3)−0.009 (3)
C30.039 (5)0.027 (4)0.021 (4)0.009 (4)0.002 (3)0.000 (3)
C130.018 (4)0.041 (5)0.023 (3)−0.003 (3)0.003 (3)−0.005 (3)
C110.017 (4)0.023 (4)0.022 (3)−0.003 (3)0.009 (3)−0.007 (3)
C120.034 (4)0.032 (4)0.014 (3)−0.007 (3)0.004 (3)−0.004 (3)
Hg1—N12.274 (4)N5—C151.329 (6)
Hg1—N32.403 (4)N5—C141.382 (6)
Hg1—Br22.4996 (7)C2—C31.361 (7)
Hg1—Br12.5472 (7)C2—H2A0.9300
N3—C91.280 (6)C5—C41.374 (7)
N3—C101.469 (6)C5—H5A0.9300
N1—C71.335 (5)C8—H8A0.9600
N1—C11.372 (6)C8—H8B0.9600
C7—N21.342 (6)C8—H8C0.9600
C7—C91.472 (7)C4—C31.422 (7)
C1—C21.384 (6)C4—H4A0.9300
C1—C61.420 (7)C15—H15A0.9300
C6—N21.366 (6)C14—C131.352 (6)
C6—C51.393 (7)C14—H14A0.9300
C9—C81.497 (6)C3—H3A0.9300
C10—C111.502 (7)C13—H13A0.9300
C10—H10A0.9700C11—C121.514 (7)
C10—H10B0.9700C11—H11A0.9700
N4—C151.350 (6)C11—H11B0.9700
N4—C131.360 (6)C12—H12A0.9700
N4—C121.465 (6)C12—H12B0.9700
N2—H2B0.8600
N1—Hg1—N371.94 (15)C3—C2—H2A120.8
N1—Hg1—Br2122.76 (11)C1—C2—H2A120.8
N3—Hg1—Br2111.53 (11)C4—C5—C6116.3 (5)
N1—Hg1—Br1112.88 (11)C4—C5—H5A121.8
N3—Hg1—Br1106.56 (12)C6—C5—H5A121.8
Br2—Hg1—Br1119.37 (2)C9—C8—H8A109.5
C9—N3—C10124.0 (5)C9—C8—H8B109.5
C9—N3—Hg1115.4 (4)H8A—C8—H8B109.5
C10—N3—Hg1120.5 (3)C9—C8—H8C109.5
C7—N1—C1107.8 (5)H8A—C8—H8C109.5
C7—N1—Hg1114.0 (4)H8B—C8—H8C109.5
C1—N1—Hg1138.0 (3)C5—C4—C3121.6 (6)
N1—C7—N2111.1 (5)C5—C4—H4A119.2
N1—C7—C9122.6 (5)C3—C4—H4A119.2
N2—C7—C9126.2 (5)N5—C15—N4112.1 (5)
N1—C1—C2133.6 (5)N5—C15—H15A124.0
N1—C1—C6106.6 (5)N4—C15—H15A124.0
C2—C1—C6119.8 (5)C13—C14—N5110.5 (5)
N2—C6—C5130.8 (5)C13—C14—H14A124.8
N2—C6—C1106.9 (5)N5—C14—H14A124.8
C5—C6—C1122.4 (5)C2—C3—C4121.5 (5)
N3—C9—C7115.8 (5)C2—C3—H3A119.2
N3—C9—C8127.4 (5)C4—C3—H3A119.2
C7—C9—C8116.8 (5)C14—C13—N4106.5 (5)
N3—C10—C11111.5 (4)C14—C13—H13A126.8
N3—C10—H10A109.3N4—C13—H13A126.8
C11—C10—H10A109.3C10—C11—C12112.8 (4)
N3—C10—H10B109.3C10—C11—H11A109.0
C11—C10—H10B109.3C12—C11—H11A109.0
H10A—C10—H10B108.0C10—C11—H11B109.0
C15—N4—C13107.0 (5)C12—C11—H11B109.0
C15—N4—C12126.6 (5)H11A—C11—H11B107.8
C13—N4—C12126.4 (5)N4—C12—C11112.6 (4)
C7—N2—C6107.7 (4)N4—C12—H12A109.1
C7—N2—H2B126.2C11—C12—H12A109.1
C6—N2—H2B126.2N4—C12—H12B109.1
C15—N5—C14104.0 (5)C11—C12—H12B109.1
C3—C2—C1118.4 (5)H12A—C12—H12B107.8
N1—Hg1—N3—C93.1 (4)N1—C7—C9—N3−2.2 (8)
Br2—Hg1—N3—C9122.0 (4)N2—C7—C9—N3−178.6 (5)
Br1—Hg1—N3—C9−106.1 (4)N1—C7—C9—C8176.8 (5)
N1—Hg1—N3—C10−173.8 (4)N2—C7—C9—C80.4 (8)
Br2—Hg1—N3—C10−54.9 (4)C9—N3—C10—C11137.0 (5)
Br1—Hg1—N3—C1077.0 (4)Hg1—N3—C10—C11−46.3 (5)
N3—Hg1—N1—C7−4.0 (4)N1—C7—N2—C62.1 (6)
Br2—Hg1—N1—C7−108.5 (4)C9—C7—N2—C6178.8 (5)
Br1—Hg1—N1—C796.8 (4)C5—C6—N2—C7179.1 (6)
N3—Hg1—N1—C1−178.7 (6)C1—C6—N2—C7−1.4 (6)
Br2—Hg1—N1—C176.9 (5)N1—C1—C2—C3178.9 (6)
Br1—Hg1—N1—C1−77.9 (5)C6—C1—C2—C3−2.4 (8)
C1—N1—C7—N2−1.8 (6)N2—C6—C5—C4−179.6 (5)
Hg1—N1—C7—N2−178.1 (4)C1—C6—C5—C41.0 (8)
C1—N1—C7—C9−178.7 (5)C6—C5—C4—C3−1.5 (8)
Hg1—N1—C7—C95.1 (7)C14—N5—C15—N40.1 (6)
C7—N1—C1—C2179.6 (6)C13—N4—C15—N50.3 (7)
Hg1—N1—C1—C2−5.5 (10)C12—N4—C15—N5179.3 (5)
C7—N1—C1—C60.8 (6)C15—N5—C14—C13−0.4 (6)
Hg1—N1—C1—C6175.7 (4)C1—C2—C3—C42.0 (9)
N1—C1—C6—N20.4 (6)C5—C4—C3—C20.0 (9)
C2—C1—C6—N2−178.6 (5)N5—C14—C13—N40.6 (6)
N1—C1—C6—C5179.9 (5)C15—N4—C13—C14−0.5 (6)
C2—C1—C6—C50.9 (8)C12—N4—C13—C14−179.6 (5)
C10—N3—C9—C7175.0 (5)N3—C10—C11—C12−67.2 (6)
Hg1—N3—C9—C7−1.7 (6)C15—N4—C12—C11114.2 (6)
C10—N3—C9—C8−3.8 (9)C13—N4—C12—C11−67.0 (7)
Hg1—N3—C9—C8179.4 (4)C10—C11—C12—N4−61.9 (6)
D—H···AD—HH···AD···AD—H···A
N2—H2B···N5i0.861.902.722 (7)160
C15—H15A···Br1ii0.932.853.778 (6)177.
Table 1

Selected bond lengths (Å)

Hg1—N12.274 (4)
Hg1—N32.403 (4)
Hg1—Br22.4996 (7)
Hg1—Br12.5472 (7)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2B⋯N5i0.861.902.722 (7)160
C15—H15A⋯Br1ii0.932.853.778 (6)177

Symmetry codes: (i) ; (ii) .

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2.  A short history of SHELX.

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Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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Journal:  Chemistry       Date:  2009-08-03       Impact factor: 5.236

4.  Guest inclusion and interpenetration tuning of Cd(II)/Mn(II) coordination grid networks assembled from a rigid linear diimidazole Schiff base ligand.

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1.  Structure of the mercury(II) mixed-halide (Br/Cl) complex of 2,2'-(5-tert-butyl-1,3-phenyl-ene)bis-(1-pentyl-1H-benzo[d]imidazole).

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Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2017-02-21

2.  Synthesis and structure of the mercury chloride complex of 2,2'-(2-bromo-5-tert-butyl-1,3-phenyl-ene)bis-(1-methyl-1H-benzimidazole).

Authors:  Varsha Rani; Harkesh B Singh; Ray J Butcher
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2017-02-10
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