Literature DB >> 22258150

A conserved microRNA/NMD regulatory circuit controls gene expression.

Rachid Karam1, Miles Wilkinson.   

Abstract

Nonsense-mediated decay (NMD) is a RNA surveillance pathway that degrades subsets of normal and aberrant mRNAs. Mutations that perturb NMD cause neurological disorders in humans, suggesting that NMD has roles in the brain. Recently, it was shown that NMD is repressed during neural development to allow for the stabilization of NMD mRNA targets. The repression of NMD during development is mediated by a neuron-expressed microRNA, miR-128, which participates in a highly conserved regulatory circuit. miR-128 is induced in differentiating neuronal cells and during brain development, leading to repressed NMD and the consequent upregulation of batteries of mRNAs encoding proteins important for neuron differentiation and function. Together with other results, this suggests the existence of a complex network linking the microRNA and NMD pathways that induce cell-specific transcripts. In this point-of-view article, we will discuss the repercussions of this discovery for neuronal development, brain function and disease.

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Year:  2012        PMID: 22258150      PMCID: PMC3342942          DOI: 10.4161/rna.9.1.18010

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  44 in total

1.  The nonsense-mediated mRNA decay pathway triggers degradation of most BRCA1 mRNAs bearing premature termination codons.

Authors:  Laure Perrin-Vidoz; Olga M Sinilnikova; Dominique Stoppa-Lyonnet; Gilbert M Lenoir; Sylvie Mazoyer
Journal:  Hum Mol Genet       Date:  2002-11-01       Impact factor: 6.150

Review 2.  Nonsense-mediated decay approaches the clinic.

Authors:  Jill A Holbrook; Gabriele Neu-Yilik; Matthias W Hentze; Andreas E Kulozik
Journal:  Nat Genet       Date:  2004-08       Impact factor: 38.330

3.  Perturbation of thymocyte development in nonsense-mediated decay (NMD)-deficient mice.

Authors:  Pamela A Frischmeyer-Guerrerio; Robert A Montgomery; Daniel S Warren; Sara K Cooke; Johannes Lutz; Christopher J Sonnenday; Anthony L Guerrerio; Harry C Dietz
Journal:  Proc Natl Acad Sci U S A       Date:  2011-06-13       Impact factor: 11.205

4.  TARPP, a novel protein that accompanies TCR gene rearrangement and thymocyte education.

Authors:  J Kisielow; A C Nairn; K Karjalainen
Journal:  Eur J Immunol       Date:  2001-04       Impact factor: 5.532

5.  A MicroRNA feedback circuit in midbrain dopamine neurons.

Authors:  Jongpil Kim; Keiichi Inoue; Jennifer Ishii; William B Vanti; Sergey V Voronov; Elizabeth Murchison; Gregory Hannon; Asa Abeliovich
Journal:  Science       Date:  2007-08-31       Impact factor: 47.728

6.  Heterogeneous dysregulation of microRNAs across the autism spectrum.

Authors:  Kawther Abu-Elneel; Tsunglin Liu; Francesca S Gazzaniga; Yuhei Nishimura; Dennis P Wall; Daniel H Geschwind; Kaiqin Lao; Kenneth S Kosik
Journal:  Neurogenetics       Date:  2008-06-19       Impact factor: 2.660

7.  The NMD mRNA surveillance pathway downregulates aberrant E-cadherin transcripts in gastric cancer cells and in CDH1 mutation carriers.

Authors:  R Karam; J Carvalho; I Bruno; C Graziadio; J Senz; D Huntsman; F Carneiro; R Seruca; M F Wilkinson; C Oliveira
Journal:  Oncogene       Date:  2008-04-21       Impact factor: 9.867

8.  Posttranscriptional gene regulation by spatial rearrangement of the 3' untranslated region.

Authors:  Andrea B Eberle; Lukas Stalder; Hansruedi Mathys; Rodolfo Zamudio Orozco; Oliver Mühlemann
Journal:  PLoS Biol       Date:  2008-04-29       Impact factor: 8.029

9.  A competition between stimulators and antagonists of Upf complex recruitment governs human nonsense-mediated mRNA decay.

Authors:  Guramrit Singh; Indrani Rebbapragada; Jens Lykke-Andersen
Journal:  PLoS Biol       Date:  2008-04-29       Impact factor: 8.029

10.  Expression profiling of mammalian microRNAs uncovers a subset of brain-expressed microRNAs with possible roles in murine and human neuronal differentiation.

Authors:  Lorenzo F Sempere; Sarah Freemantle; Ian Pitha-Rowe; Eric Moss; Ethan Dmitrovsky; Victor Ambros
Journal:  Genome Biol       Date:  2004-02-16       Impact factor: 13.583

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  12 in total

1.  The unfolded protein response is shaped by the NMD pathway.

Authors:  Rachid Karam; Chih-Hong Lou; Heike Kroeger; Lulu Huang; Jonathan H Lin; Miles F Wilkinson
Journal:  EMBO Rep       Date:  2015-03-25       Impact factor: 8.807

Review 2.  RNA on the brain: emerging layers of post-transcriptional regulation in cerebral cortex development.

Authors:  Ashley L Lennox; Hanqian Mao; Debra L Silver
Journal:  Wiley Interdiscip Rev Dev Biol       Date:  2017-08-24       Impact factor: 5.814

3.  Cd59 and inflammation regulate Schwann cell development.

Authors:  Ashtyn T Wiltbank; Emma R Steinson; Stacey J Criswell; Melanie Piller; Sarah Kucenas
Journal:  Elife       Date:  2022-06-24       Impact factor: 8.713

Review 4.  Nonsense-mediated decay in genetic disease: friend or foe?

Authors:  Jake N Miller; David A Pearce
Journal:  Mutat Res Rev Mutat Res       Date:  2014-05-28       Impact factor: 5.657

5.  UPF2 leads to degradation of dendritically targeted mRNAs to regulate synaptic plasticity and cognitive function.

Authors:  Michael Notaras; Megan Allen; Francesco Longo; Nicole Volk; Miklos Toth; Noo Li Jeon; Eric Klann; Dilek Colak
Journal:  Mol Psychiatry       Date:  2019-10-21       Impact factor: 15.992

6.  A Perspective on the Role of microRNA-128 Regulation in Mental and Behavioral Disorders.

Authors:  Ai-Sze Ching; Azlina Ahmad-Annuar
Journal:  Front Cell Neurosci       Date:  2015-12-14       Impact factor: 5.505

7.  Identification of novel post-transcriptional features in olfactory receptor family mRNAs.

Authors:  Eleen Y Shum; Josh L Espinoza; Madhuvanthi Ramaiah; Miles F Wilkinson
Journal:  Nucleic Acids Res       Date:  2015-04-23       Impact factor: 16.971

Review 8.  Nonsense-mediated mRNA decay among coagulation factor genes.

Authors:  Shirin Shahbazi
Journal:  Iran J Basic Med Sci       Date:  2016-04       Impact factor: 2.699

9.  A Comparative Review of microRNA Expression Patterns in Autism Spectrum Disorder.

Authors:  Steven D Hicks; Frank A Middleton
Journal:  Front Psychiatry       Date:  2016-11-04       Impact factor: 4.157

10.  Antisense oligonucleotide-directed inhibition of nonsense-mediated mRNA decay.

Authors:  Tomoki T Nomakuchi; Frank Rigo; Isabel Aznarez; Adrian R Krainer
Journal:  Nat Biotechnol       Date:  2015-12-14       Impact factor: 54.908

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