Literature DB >> 22258143

Pseudogenes are not pseudo any more.

Yan-Zi Wen1, Ling-Ling Zheng, Liang-Hu Qu, Francisco J Ayala, Zhao-Rong Lun.   

Abstract

Recent significant progress toward understanding the function of pseudogenes in protozoa (Trypanosoma brucei), metazoa (mouse) and plants, make it pertinent to provide a brief overview on what has been learned about this fascinating subject. We discuss the regulatory mechanisms of pseudogenes at the post-transcriptional level and advance new ideas toward understanding the evolution of these, sometimes called "garbage genes" or "junk DNA," seeking to stimulate the interest of scientists and additional research on the subject. We hope this point-of-view can be helpful to scientists working or seeking to work on these and related issues.

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Year:  2012        PMID: 22258143     DOI: 10.4161/rna.9.1.18277

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  17 in total

1.  Expression profiling of long noncoding RNAs and the dynamic changes of lncRNA-NR024118 and Cdkn1c in angiotensin II-treated cardiac fibroblasts.

Authors:  Xiao-Ying Jiang; Qi-Lan Ning
Journal:  Int J Clin Exp Pathol       Date:  2014-03-15

2.  Methods to Identify and Study the Evolution of Pseudogenes Using a Phylogenetic Approach.

Authors:  Jacques Dainat; Pierre Pontarotti
Journal:  Methods Mol Biol       Date:  2021

Review 3.  The persistent contributions of RNA to eukaryotic gen(om)e architecture and cellular function.

Authors:  Jürgen Brosius
Journal:  Cold Spring Harb Perspect Biol       Date:  2014-07-31       Impact factor: 10.005

4.  dreamBase: DNA modification, RNA regulation and protein binding of expressed pseudogenes in human health and disease.

Authors:  Ling-Ling Zheng; Ke-Ren Zhou; Shun Liu; Ding-Yao Zhang; Ze-Lin Wang; Zhi-Rong Chen; Jian-Hua Yang; Liang-Hu Qu
Journal:  Nucleic Acids Res       Date:  2018-01-04       Impact factor: 16.971

5.  The fate of tandemly duplicated genes assessed by the expression analysis of a group of Arabidopsis thaliana RING-H2 ubiquitin ligase genes of the ATL family.

Authors:  Victor Aguilar-Hernández; Plinio Guzmán
Journal:  Plant Mol Biol       Date:  2013-10-18       Impact factor: 4.076

6.  Sex bias in copy number variation of olfactory receptor gene family depends on ethnicity.

Authors:  Farideh Shadravan
Journal:  Front Genet       Date:  2013-03-14       Impact factor: 4.599

7.  On the immortality of television sets: "function" in the human genome according to the evolution-free gospel of ENCODE.

Authors:  Dan Graur; Yichen Zheng; Nicholas Price; Ricardo B R Azevedo; Rebecca A Zufall; Eran Elhaik
Journal:  Genome Biol Evol       Date:  2013       Impact factor: 3.416

8.  Deep transcriptome sequencing provides new insights into the structural and functional organization of the wheat genome.

Authors:  Lise Pingault; Frédéric Choulet; Adriana Alberti; Natasha Glover; Patrick Wincker; Catherine Feuillet; Etienne Paux
Journal:  Genome Biol       Date:  2015-02-10       Impact factor: 13.583

9.  FTH1P3, a Novel H-Ferritin Pseudogene Transcriptionally Active, Is Ubiquitously Expressed and Regulated during Cell Differentiation.

Authors:  Maddalena Di Sanzo; Ilenia Aversa; Gianluca Santamaria; Monica Gagliardi; Mariafranca Panebianco; Flavia Biamonte; Fabiana Zolea; Maria Concetta Faniello; Giovanni Cuda; Francesco Costanzo
Journal:  PLoS One       Date:  2016-03-16       Impact factor: 3.240

10.  Comparative transcriptome analysis of small noncoding RNAs in different stages of Trypanosoma brucei.

Authors:  Ling-Ling Zheng; Yan-Zi Wen; Jian-Hua Yang; Jian-You Liao; Peng Shao; Hui Xu; Hui Zhou; Jun-Zhi Wen; Zhao-Rong Lun; Francisco J Ayala; Liang-Hu Qu
Journal:  RNA       Date:  2013-05-23       Impact factor: 4.942

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