Literature DB >> 22256188

Classification of astrocytomas and oligodendrogliomas from mass spectrometry data using sparse kernel machines.

Jacob Huang1, Behnood Gholami, Nathalie Y R Agar, Isaiah Norton, Wassim M Haddad, Allen R Tannenbaum.   

Abstract

Glioma histologies are the primary factor in prognostic estimates and are used in determining the proper course of treatment. Furthermore, due to the sensitivity of cranial environments, real-time tumor-cell classification and boundary detection can aid in the precision and completeness of tumor resection. A recent improvement to mass spectrometry known as desorption electrospray ionization operates in an ambient environment without the application of a preparation compound. This allows for a real-time acquisition of mass spectra during surgeries and other live operations. In this paper, we present a framework using sparse kernel machines to determine a glioma sample's histopathological subtype by analyzing its chemical composition acquired by desorption electrospray ionization mass spectrometry.

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Year:  2011        PMID: 22256188      PMCID: PMC3644033          DOI: 10.1109/IEMBS.2011.6091964

Source DB:  PubMed          Journal:  Conf Proc IEEE Eng Med Biol Soc        ISSN: 1557-170X


  15 in total

Review 1.  Ambient mass spectrometry using desorption electrospray ionization (DESI): instrumentation, mechanisms and applications in forensics, chemistry, and biology.

Authors:  Zoltán Takáts; Justin M Wiseman; R Graham Cooks
Journal:  J Mass Spectrom       Date:  2005-10       Impact factor: 1.982

2.  Evaluation of serum protein profiling by surface-enhanced laser desorption/ionization time-of-flight mass spectrometry for the detection of prostate cancer: I. Assessment of platform reproducibility.

Authors:  O John Semmes; Ziding Feng; Bao-Ling Adam; Lionel L Banez; William L Bigbee; David Campos; Lisa H Cazares; Daniel W Chan; William E Grizzle; Elzbieta Izbicka; Jacob Kagan; Gunjan Malik; Dale McLerran; Judd W Moul; Alan Partin; Premkala Prasanna; Jason Rosenzweig; Lori J Sokoll; Shiv Srivastava; Sudhir Srivastava; Ian Thompson; Manda J Welsh; Nicole White; Marcy Winget; Yutaka Yasui; Zhen Zhang; Liu Zhu
Journal:  Clin Chem       Date:  2005-01       Impact factor: 8.327

Review 3.  Update on brain tumor imaging: from anatomy to physiology.

Authors:  S Cha
Journal:  AJNR Am J Neuroradiol       Date:  2006-03       Impact factor: 3.825

4.  Discrimination of human astrocytoma subtypes by lipid analysis using desorption electrospray ionization imaging mass spectrometry.

Authors:  Livia S Eberlin; Allison L Dill; Alexandra J Golby; Keith L Ligon; Justin M Wiseman; R Graham Cooks; Nathalie Y R Agar
Journal:  Angew Chem Int Ed Engl       Date:  2010-08-09       Impact factor: 15.336

Review 5.  Machine learning classifiers and fMRI: a tutorial overview.

Authors:  Francisco Pereira; Tom Mitchell; Matthew Botvinick
Journal:  Neuroimage       Date:  2008-11-21       Impact factor: 6.556

6.  Monitoring of biochemical changes through the c6 gliomas progression and invasion by fourier transform infrared (FTIR) imaging.

Authors:  Abdelilah Beljebbar; Sylvain Dukic; Nadia Amharref; Salima Bellefqih; Michel Manfait
Journal:  Anal Chem       Date:  2009-11-15       Impact factor: 6.986

7.  Lipid profiles of canine invasive transitional cell carcinoma of the urinary bladder and adjacent normal tissue by desorption electrospray ionization imaging mass spectrometry.

Authors:  Allison L Dill; Demian R Ifa; Nicholas E Manicke; Anthony B Costa; José A Ramos-Vara; Deborah W Knapp; R Graham Cooks
Journal:  Anal Chem       Date:  2009-11-01       Impact factor: 6.986

8.  Characterization of lipid extracts from brain tissue and tumors using Raman spectroscopy and mass spectrometry.

Authors:  Milena Köhler; Susanne Machill; Reiner Salzer; Christoph Krafft
Journal:  Anal Bioanal Chem       Date:  2009-01-20       Impact factor: 4.142

9.  Unsupervised analysis of transcriptomic profiles reveals six glioma subtypes.

Authors:  Aiguo Li; Jennifer Walling; Susie Ahn; Yuri Kotliarov; Qin Su; Martha Quezado; J Carl Oberholtzer; John Park; Jean C Zenklusen; Howard A Fine
Journal:  Cancer Res       Date:  2009-02-24       Impact factor: 12.701

Review 10.  The 2007 WHO classification of tumours of the central nervous system.

Authors:  David N Louis; Hiroko Ohgaki; Otmar D Wiestler; Webster K Cavenee; Peter C Burger; Anne Jouvet; Bernd W Scheithauer; Paul Kleihues
Journal:  Acta Neuropathol       Date:  2007-07-06       Impact factor: 17.088

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  2 in total

Review 1.  The Art of Intraoperative Glioma Identification.

Authors:  Zoe Z Zhang; Lisa B E Shields; David A Sun; Yi Ping Zhang; Matthew A Hunt; Christopher B Shields
Journal:  Front Oncol       Date:  2015-07-30       Impact factor: 6.244

2.  Characterization of metabolites in infiltrating gliomas using ex vivo ¹H high-resolution magic angle spinning spectroscopy.

Authors:  Adam Elkhaled; Llewellyn Jalbert; Alexandra Constantin; Hikari A I Yoshihara; Joanna J Phillips; Annette M Molinaro; Susan M Chang; Sarah J Nelson
Journal:  NMR Biomed       Date:  2014-03-05       Impact factor: 4.044

  2 in total

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