Literature DB >> 22247531

Genome sequence of strain HIMB30, a novel member of the marine Gammaproteobacteria.

Megan J Huggett1, Michael S Rappé.   

Abstract

Strain HIMB30 was isolated from coastal Hawaii seawater by extinction culturing in seawater-based oligotrophic medium. It is a phylogenetically unique member of the class Gammaproteobacteria that is only distantly related to its closest cultured relatives. Here we present the genome sequence of strain HIMB30, including genes for proteorhodopsin-based phototrophy and the Calvin-Benson-Bassham cycle.

Mesh:

Substances:

Year:  2012        PMID: 22247531      PMCID: PMC3264069          DOI: 10.1128/JB.06506-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  10 in total

1.  High-throughput methods for culturing microorganisms in very-low-nutrient media yield diverse new marine isolates.

Authors:  Stephanie A Connon; Stephen J Giovannoni
Journal:  Appl Environ Microbiol       Date:  2002-08       Impact factor: 4.792

2.  Fine-scale phylogenetic architecture of a complex bacterial community.

Authors:  Silvia G Acinas; Vanja Klepac-Ceraj; Dana E Hunt; Chanathip Pharino; Ivica Ceraj; Daniel L Distel; Martin F Polz
Journal:  Nature       Date:  2004-07-29       Impact factor: 49.962

3.  Litoricolaceae fam. nov., to include Litoricola lipolytica gen. nov., sp. nov., a marine bacterium belonging to the order Oceanospirillales.

Authors:  Hana Kim; Yoe-Jin Choo; Jang-Cheon Cho
Journal:  Int J Syst Evol Microbiol       Date:  2007-08       Impact factor: 2.747

4.  IMG ER: a system for microbial genome annotation expert review and curation.

Authors:  Victor M Markowitz; Konstantinos Mavromatis; Natalia N Ivanova; I-Min A Chen; Ken Chu; Nikos C Kyrpides
Journal:  Bioinformatics       Date:  2009-06-27       Impact factor: 6.937

5.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

6.  Litoricola marina sp. nov.

Authors:  Ahyoung Choi; Kiyoung Lee; Hyun-Myung Oh; Jing Feng; Jang-Cheon Cho
Journal:  Int J Syst Evol Microbiol       Date:  2009-08-10       Impact factor: 2.747

7.  Prodigal: prokaryotic gene recognition and translation initiation site identification.

Authors:  Doug Hyatt; Gwo-Liang Chen; Philip F Locascio; Miriam L Land; Frank W Larimer; Loren J Hauser
Journal:  BMC Bioinformatics       Date:  2010-03-08       Impact factor: 3.169

8.  Rfam: annotating non-coding RNAs in complete genomes.

Authors:  Sam Griffiths-Jones; Simon Moxon; Mhairi Marshall; Ajay Khanna; Sean R Eddy; Alex Bateman
Journal:  Nucleic Acids Res       Date:  2005-01-01       Impact factor: 16.971

9.  Transporter genes expressed by coastal bacterioplankton in response to dissolved organic carbon.

Authors:  Rachel S Poretsky; Shulei Sun; Xiaozhen Mou; Mary Ann Moran
Journal:  Environ Microbiol       Date:  2009-11-23       Impact factor: 5.491

10.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971

  10 in total
  5 in total

1.  Growing unculturable bacteria.

Authors:  Eric J Stewart
Journal:  J Bacteriol       Date:  2012-06-01       Impact factor: 3.490

2.  Modular community structure suggests metabolic plasticity during the transition to polar night in ice-covered Antarctic lakes.

Authors:  Trista J Vick-Majors; John C Priscu; Linda A Amaral-Zettler
Journal:  ISME J       Date:  2013-10-24       Impact factor: 10.302

3.  Evidence for hydrogen oxidation and metabolic plasticity in widespread deep-sea sulfur-oxidizing bacteria.

Authors:  Karthik Anantharaman; John A Breier; Cody S Sheik; Gregory J Dick
Journal:  Proc Natl Acad Sci U S A       Date:  2012-12-20       Impact factor: 11.205

4.  Ecophysiology of the Cosmopolitan OM252 Bacterioplankton (Gammaproteobacteria).

Authors:  Emily R Savoie; V Celeste Lanclos; Michael W Henson; Chuankai Cheng; Eric W Getz; Shelby J Barnes; Douglas E LaRowe; Michael S Rappé; J Cameron Thrash
Journal:  mSystems       Date:  2021-06-29       Impact factor: 6.496

5.  Insights on aquatic microbiome of the Indian Sundarbans mangrove areas.

Authors:  Paltu Kumar Dhal; Germán A Kopprio; Astrid Gärdes
Journal:  PLoS One       Date:  2020-02-25       Impact factor: 3.240

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.