Literature DB >> 22247529

Draft genome sequence of Pantoea ananatis B1-9, a nonpathogenic plant growth-promoting bacterium.

Hyun Jung Kim1, Jin Hee Lee, Beom Ryong Kang, Xiaoqing Rong, Brian B McSpadden Gardener, Hyung Jin Ji, Chang-Seuk Park, Young Cheol Kim.   

Abstract

Pantoea ananatis B1-9 is an endophytic Gram-negative rhizobacterium that was isolated for its ability to promote plant growth and improve crop yield in the field. Here we report the draft genome sequence of P. ananatis B1-9. Comparison of this sequence to the sequenced genome of a plant-pathogenic P. ananatis strain, LMG20103, indicated that the pathogenesis-related genes were absent, but a subset of gene functions that may be related to its plant growth promotion were present.

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Mesh：

Year:  2012        PMID： 22247529      PMCID： PMC3264085          DOI： 10.1128/JB.06484-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  7 in total

1.  Velvet: algorithms for de novo short read assembly using de Bruijn graphs.

Authors:  Daniel R Zerbino; Ewan Birney
Journal:  Genome Res       Date:  2008-03-18       Impact factor: 9.043

2.  Genetic diversity of cultivable plant growth-promoting rhizobacteria in Korea.

Authors:  Won-Il Kim; Won Kyong Cho; Su-Nam Kim; Hyosub Chu; Kyoung-Yul Ryu; Jong-Chul Yun; Chang-Seuk Park
Journal:  J Microbiol Biotechnol       Date:  2011-08       Impact factor: 2.351

3.  Genome sequence of Pantoea ananatis LMG20103, the causative agent of Eucalyptus blight and dieback.

Authors:  Pieter De Maayer; Wai Yin Chan; Stephanus N Venter; Ian K Toth; Paul R J Birch; Fourie Joubert; Teresa A Coutinho
Journal:  J Bacteriol       Date:  2010-03-26       Impact factor: 3.490

4.  Pebble and rock band: heuristic resolution of repeats and scaffolding in the velvet short-read de novo assembler.

Authors:  Daniel R Zerbino; Gayle K McEwen; Elliott H Margulies; Ewan Birney
Journal:  PLoS One       Date:  2009-12-22       Impact factor: 3.240

5.  The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes.

Authors:  Ross Overbeek; Tadhg Begley; Ralph M Butler; Jomuna V Choudhuri; Han-Yu Chuang; Matthew Cohoon; Valérie de Crécy-Lagard; Naryttza Diaz; Terry Disz; Robert Edwards; Michael Fonstein; Ed D Frank; Svetlana Gerdes; Elizabeth M Glass; Alexander Goesmann; Andrew Hanson; Dirk Iwata-Reuyl; Roy Jensen; Neema Jamshidi; Lutz Krause; Michael Kubal; Niels Larsen; Burkhard Linke; Alice C McHardy; Folker Meyer; Heiko Neuweger; Gary Olsen; Robert Olson; Andrei Osterman; Vasiliy Portnoy; Gordon D Pusch; Dmitry A Rodionov; Christian Rückert; Jason Steiner; Rick Stevens; Ines Thiele; Olga Vassieva; Yuzhen Ye; Olga Zagnitko; Veronika Vonstein
Journal:  Nucleic Acids Res       Date:  2005-10-07       Impact factor: 16.971

Review 6.  Pantoea ananatis: an unconventional plant pathogen.

Authors:  Teresa A Coutinho; Stephanus N Venter
Journal:  Mol Plant Pathol       Date:  2009-05       Impact factor: 5.663

7.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969
  7 in total
  14 in total

1.  Twenty-one genome sequences from Pseudomonas species and 19 genome sequences from diverse bacteria isolated from the rhizosphere and endosphere of Populus deltoides.

Authors:  Steven D Brown; Sagar M Utturkar; Dawn M Klingeman; Courtney M Johnson; Stanton L Martin; Miriam L Land; Tse-Yuan S Lu; Christopher W Schadt; Mitchel J Doktycz; Dale A Pelletier
Journal:  J Bacteriol       Date:  2012-11       Impact factor: 3.490

2.  Draft Genome Sequence of Pantoea sp. Strain MBLJ3, Isolated in a Laboratory Environmental Control Study.

Authors:  Jing Zhang; Guo-Chiuan Hung; Haiyan Lei; Tianwei Li; Bingjie Li; Shien Tsai; Shyh-Ching Lo
Journal:  Genome Announc       Date:  2015-02-26

3.  Integrative conjugative elements of the ICEPan family play a potential role in Pantoea ananatis ecological diversification and antibiosis.

Authors:  Pieter De Maayer; Wai-Yin Chan; Douglas A J Martin; Jochen Blom; Stephanus N Venter; Brion Duffy; Don A Cowan; Theo H M Smits; Teresa A Coutinho
Journal:  Front Microbiol       Date:  2015-06-08       Impact factor: 5.640

4.  Genome Sequence of Pantoea ananatis Strain CFH 7-1, Which Is Associated with a Vector-Borne Cotton Fruit Disease.

Authors:  Enrique G Medrano; Alois A Bell
Journal:  Genome Announc       Date:  2015-09-10

5.  Response of leaf endophytic bacterial community to elevated CO2 at different growth stages of rice plant.

Authors:  Gaidi Ren; Huayong Zhang; Xiangui Lin; Jianguo Zhu; Zhongjun Jia
Journal:  Front Microbiol       Date:  2015-08-31       Impact factor: 5.640

6.  The genomes of closely related Pantoea ananatis maize seed endophytes having different effects on the host plant differ in secretion system genes and mobile genetic elements.

Authors:  Raheleh Sheibani-Tezerji; Muhammad Naveed; Marc-André Jehl; Angela Sessitsch; Thomas Rattei; Birgit Mitter
Journal:  Front Microbiol       Date:  2015-05-12       Impact factor: 5.640

7.  Draft Genome Sequence of the Antibiotic-Producing Epiphytic Isolate Pantoea ananatis BRT175.

Authors:  Derek D N Smith; Morgan W B Kirzinger; John Stavrinides
Journal:  Genome Announc       Date:  2013-11-07

8.  Draft Genome Sequence of Pantoea ananatis Strain AMG521, a Rice Plant Growth-Promoting Bacterial Endophyte Isolated from the Guadalquivir Marshes in Southern Spain.

Authors:  Esaú Megías; Manuel Megías; Francisco Javier Ollero; Mariangela Hungria
Journal:  Genome Announc       Date:  2016-02-18

9.  The large universal Pantoea plasmid LPP-1 plays a major role in biological and ecological diversification.

Authors:  Pieter De Maayer; Wai-Yin Chan; Jochen Blom; Stephanus N Venter; Brion Duffy; Theo H M Smits; Teresa A Coutinho
Journal:  BMC Genomics       Date:  2012-11-15       Impact factor: 3.969

10.  Analysis of the Pantoea ananatis pan-genome reveals factors underlying its ability to colonize and interact with plant, insect and vertebrate hosts.

Authors:  Pieter De Maayer; Wai Yin Chan; Enrico Rubagotti; Stephanus N Venter; Ian K Toth; Paul R J Birch; Teresa A Coutinho
Journal:  BMC Genomics       Date:  2014-05-27       Impact factor: 3.969
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