Literature DB >> 22247528

Complete genome sequence of strain 1860, a crenarchaeon of the genus Pyrobaculum able to grow with various electron acceptors.

Andrey V Mardanov1, Vadim M Gumerov, Galina B Slobodkina, Alexey V Beletsky, Elizaveta A Bonch-Osmolovskaya, Nikolai V Ravin, Konstantin G Skryabin.   

Abstract

Strain 1860, a novel member of the genus Pyrobaculum, is a hyperthermophilic organotrophic crenarchaeon growing anaerobically with various electron acceptors. The complete genome sequence reveals genes for several membrane-bound oxidoreductases, the Embden-Meyerhof and Entner-Doudoroff pathways for glucose metabolism, the tricarboxylic acid cycle, the glyoxylate cycle, and the dicarboxylate/4-hydroxybutyrate cycle.

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Year:  2012        PMID： 22247528      PMCID： PMC3264072          DOI： 10.1128/JB.06465-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  7 in total

1.  Improved microbial gene identification with GLIMMER.

Authors:  A L Delcher; D Harmon; S Kasif; O White; S L Salzberg
Journal:  Nucleic Acids Res       Date:  1999-12-01       Impact factor: 16.971

2.  Pyrobaculum oguniense sp. nov., a novel facultatively aerobic and hyperthermophilic archaeon growing at up to 97 degrees C.

Authors:  Y Sako; T Nunoura; A Uchida
Journal:  Int J Syst Evol Microbiol       Date:  2001-03       Impact factor: 2.747

3.  Genome sequence of the hyperthermophilic crenarchaeon Pyrobaculum aerophilum.

Authors:  Sorel T Fitz-Gibbon; Heidi Ladner; Ung-Jin Kim; Karl O Stetter; Melvin I Simon; Jeffrey H Miller
Journal:  Proc Natl Acad Sci U S A       Date:  2002-01-15       Impact factor: 11.205

4.  Transcriptional map of respiratory versatility in the hyperthermophilic crenarchaeon Pyrobaculum aerophilum.

Authors:  Aaron E Cozen; Matthew T Weirauch; Katherine S Pollard; David L Bernick; Joshua M Stuart; Todd M Lowe
Journal:  J Bacteriol       Date:  2008-12-01       Impact factor: 3.490

5.  Pyrobaculum aerophilum sp. nov., a novel nitrate-reducing hyperthermophilic archaeum.

Authors:  P Völkl; R Huber; E Drobner; R Rachel; S Burggraf; A Trincone; K O Stetter
Journal:  Appl Environ Microbiol       Date:  1993-09       Impact factor: 4.792

6.  A dicarboxylate/4-hydroxybutyrate autotrophic carbon assimilation cycle in the hyperthermophilic Archaeum Ignicoccus hospitalis.

Authors:  Harald Huber; Martin Gallenberger; Ulrike Jahn; Eva Eylert; Ivan A Berg; Daniel Kockelkorn; Wolfgang Eisenreich; Georg Fuchs
Journal:  Proc Natl Acad Sci U S A       Date:  2008-05-29       Impact factor: 11.205

7.  AutoFACT: an automatic functional annotation and classification tool.

Authors:  Liisa B Koski; Michael W Gray; B Franz Lang; Gertraud Burger
Journal:  BMC Bioinformatics       Date:  2005-06-16       Impact factor: 3.169
  7 in total
  8 in total

1.  Higher diversity and abundance of denitrifying microorganisms in environments than considered previously.

Authors:  Wei Wei; Kazuo Isobe; Tomoyasu Nishizawa; Lin Zhu; Yutaka Shiratori; Nobuhito Ohte; Keisuke Koba; Shigeto Otsuka; Keishi Senoo
Journal:  ISME J       Date:  2015-03-10       Impact factor: 10.302

2.  The Geoglobus acetivorans genome: Fe(III) reduction, acetate utilization, autotrophic growth, and degradation of aromatic compounds in a hyperthermophilic archaeon.

Authors:  Andrey V Mardanov; Galina B Slododkina; Alexander I Slobodkin; Alexey V Beletsky; Sergey N Gavrilov; Ilya V Kublanov; Elizaveta A Bonch-Osmolovskaya; Konstantin G Skryabin; Nikolai V Ravin
Journal:  Appl Environ Microbiol       Date:  2014-11-21       Impact factor: 4.792

3.  Cytochromes c in Archaea: distribution, maturation, cell architecture, and the special case of Ignicoccus hospitalis.

Authors:  Arnulf Kletzin; Thomas Heimerl; Jennifer Flechsler; Laura van Niftrik; Reinhard Rachel; Andreas Klingl
Journal:  Front Microbiol       Date:  2015-05-12       Impact factor: 5.640

4.  The distribution, diversity, and importance of 16S rRNA gene introns in the order Thermoproteales.

Authors:  Zackary J Jay; William P Inskeep
Journal:  Biol Direct       Date:  2015-07-09       Impact factor: 4.540

5.  Biochemical characterization of a carboxylesterase from the archaeon Pyrobaculum sp. 1860 and a rational explanation of its substrate specificity and thermostability.

Authors:  Hua Shao; Li Xu; Yunjun Yan
Journal:  Int J Mol Sci       Date:  2014-09-23       Impact factor: 5.923

6.  Metagenomic evaluation of bacterial and archaeal diversity in the geothermal hot springs of manikaran, India.

Authors:  Sonu Bhatia; Navneet Batra; Ashish Pathak; Stefan J Green; Amit Joshi; Ashvini Chauhan
Journal:  Genome Announc       Date:  2015-02-19

7.  Complete genome sequence of Pyrobaculum oguniense.

Authors:  David L Bernick; Kevin Karplus; Lauren M Lui; Joanna K C Coker; Julie N Murphy; Patricia P Chan; Aaron E Cozen; Todd M Lowe
Journal:  Stand Genomic Sci       Date:  2012-07-20

8.  NADP-Dependent Aldehyde Dehydrogenase from Archaeon Pyrobaculum sp.1860: Structural and Functional Features.

Authors:  Ekaterina Yu Bezsudnova; Tatiana E Petrova; Natalia V Artemova; Konstantin M Boyko; Ivan G Shabalin; Tatiana V Rakitina; Konstantin M Polyakov; Vladimir O Popov
Journal:  Archaea       Date:  2016-11-10       Impact factor: 3.273
  8 in total

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