Literature DB >> 22237701

Genetics and epigenetics of the skin meet deep sequence.

Jeffrey B Cheng1, Raymond J Cho.   

Abstract

Rapid advances in next-generation sequencing technology are revolutionizing approaches to genomic and epigenomic studies of skin. Deep sequencing of cutaneous malignancies reveals heavily mutagenized genomes with large numbers of low-prevalence mutations and multiple resistance mechanisms to targeted therapies. Next-generation sequencing approaches have already paid rich dividends in identifying the genetic causes of dermatologic disease, both in heritable mutations and the somatic aberrations that underlie cutaneous mosaicism. Although epigenetic alterations clearly influence tumorigenesis, pluripotent stem cell biology, and epidermal cell lineage decisions, labor and cost-intensive approaches long delayed a genome-scale perspective. New insights into epigenomic mechanisms in skin disease should arise from the accelerating assessment of histone modification, DNA methylation, and related gene expression signatures.

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Year:  2012        PMID: 22237701      PMCID: PMC4099064          DOI: 10.1038/jid.2011.436

Source DB:  PubMed          Journal:  J Invest Dermatol        ISSN: 0022-202X            Impact factor:   8.551


  111 in total

1.  Polycomb complexes repress developmental regulators in murine embryonic stem cells.

Authors:  Laurie A Boyer; Kathrin Plath; Julia Zeitlinger; Tobias Brambrink; Lea A Medeiros; Tong Ihn Lee; Stuart S Levine; Marius Wernig; Adriana Tajonar; Mridula K Ray; George W Bell; Arie P Otte; Miguel Vidal; David K Gifford; Richard A Young; Rudolf Jaenisch
Journal:  Nature       Date:  2006-04-19       Impact factor: 49.962

2.  Sensitive mutation detection in heterogeneous cancer specimens by massively parallel picoliter reactor sequencing.

Authors:  Roman K Thomas; Elizabeth Nickerson; Jan F Simons; Pasi A Jänne; Torstein Tengs; Yuki Yuza; Levi A Garraway; Thomas LaFramboise; Jeffrey C Lee; Kinjal Shah; Keith O'Neill; Hidefumi Sasaki; Neal Lindeman; Kwok-Kin Wong; Ana M Borras; Edward J Gutmann; Konstantin H Dragnev; Ralph DeBiasi; Tzu-Hsiu Chen; Karen A Glatt; Heidi Greulich; Brian Desany; Christine K Lubeski; William Brockman; Pablo Alvarez; Stephen K Hutchison; J H Leamon; Michael T Ronan; Gregory S Turenchalk; Michael Egholm; William R Sellers; Jonathan M Rothberg; Matthew Meyerson
Journal:  Nat Med       Date:  2006-06-25       Impact factor: 53.440

3.  An integrated approach to uncover drivers of cancer.

Authors:  Uri David Akavia; Oren Litvin; Jessica Kim; Felix Sanchez-Garcia; Dylan Kotliar; Helen C Causton; Panisa Pochanard; Eyal Mozes; Levi A Garraway; Dana Pe'er
Journal:  Cell       Date:  2010-12-02       Impact factor: 41.582

4.  Mll partial tandem duplication induces aberrant Hox expression in vivo via specific epigenetic alterations.

Authors:  Adrienne M Dorrance; Shujun Liu; Weifeng Yuan; Brian Becknell; Kristy J Arnoczky; Martin Guimond; Matthew P Strout; Lan Feng; Tatsuya Nakamura; Li Yu; Laura J Rush; Michael Weinstein; Gustavo Leone; Lizhao Wu; Amy Ferketich; Susan P Whitman; Guido Marcucci; Michael A Caligiuri
Journal:  J Clin Invest       Date:  2006-09-14       Impact factor: 14.808

Review 5.  Progress and promise of genome-wide association studies for human complex trait genetics.

Authors:  Barbara E Stranger; Eli A Stahl; Towfique Raj
Journal:  Genetics       Date:  2010-11-29       Impact factor: 4.562

6.  Melanomas acquire resistance to B-RAF(V600E) inhibition by RTK or N-RAS upregulation.

Authors:  Ramin Nazarian; Hubing Shi; Qi Wang; Xiangju Kong; Richard C Koya; Hane Lee; Zugen Chen; Mi-Kyung Lee; Narsis Attar; Hooman Sazegar; Thinle Chodon; Stanley F Nelson; Grant McArthur; Jeffrey A Sosman; Antoni Ribas; Roger S Lo
Journal:  Nature       Date:  2010-11-24       Impact factor: 49.962

7.  Polyclonality of BRAF mutations in primary melanoma and the selection of mutant alleles during progression.

Authors:  J Lin; Y Goto; H Murata; K Sakaizawa; A Uchiyama; T Saida; M Takata
Journal:  Br J Cancer       Date:  2011-01-11       Impact factor: 7.640

8.  Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells.

Authors:  Ryan Lister; Mattia Pelizzola; Yasuyuki S Kida; R David Hawkins; Joseph R Nery; Gary Hon; Jessica Antosiewicz-Bourget; Ronan O'Malley; Rosa Castanon; Sarit Klugman; Michael Downes; Ruth Yu; Ron Stewart; Bing Ren; James A Thomson; Ronald M Evans; Joseph R Ecker
Journal:  Nature       Date:  2011-02-02       Impact factor: 49.962

9.  DNA-methylation profiling distinguishes malignant melanomas from benign nevi.

Authors:  Kathleen Conway; Sharon N Edmiston; Zakaria S Khondker; Pamela A Groben; Xin Zhou; Haitao Chu; Pei Fen Kuan; Honglin Hao; Craig Carson; Marianne Berwick; David W Olilla; Nancy E Thomas
Journal:  Pigment Cell Melanoma Res       Date:  2011-02-18       Impact factor: 4.693

10.  COT drives resistance to RAF inhibition through MAP kinase pathway reactivation.

Authors:  Cory M Johannessen; Jesse S Boehm; So Young Kim; Sapana R Thomas; Leslie Wardwell; Laura A Johnson; Caroline M Emery; Nicolas Stransky; Alexandria P Cogdill; Jordi Barretina; Giordano Caponigro; Haley Hieronymus; Ryan R Murray; Kourosh Salehi-Ashtiani; David E Hill; Marc Vidal; Jean J Zhao; Xiaoping Yang; Ozan Alkan; Sungjoon Kim; Jennifer L Harris; Christopher J Wilson; Vic E Myer; Peter M Finan; David E Root; Thomas M Roberts; Todd Golub; Keith T Flaherty; Reinhard Dummer; Barbara L Weber; William R Sellers; Robert Schlegel; Jennifer A Wargo; William C Hahn; Levi A Garraway
Journal:  Nature       Date:  2010-11-24       Impact factor: 49.962

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  6 in total

Review 1.  Genome-wide epigenetics.

Authors:  Brian C Capell; Shelley L Berger
Journal:  J Invest Dermatol       Date:  2013-06       Impact factor: 8.551

2.  Global and gene-specific DNA methylation and hydroxymethylation in human skin exposed and not exposed to sun radiation.

Authors:  Mikaelly Batista da Silva; Alanne Rayssa da Silva Melo; Ludimila de Araújo Costa; Haline Barroso; Naila Francis Paulo de Oliveira
Journal:  An Bras Dermatol       Date:  2017 Nov-Dec       Impact factor: 1.896

3.  Advances and Applications of Ion Torrent Personal Genome Machine in Cutaneous Squamous Cell Carcinoma Reveal Novel Gene Mutations.

Authors:  Yu-Ping Hsiao; Chun-Te Lu; Ju Chang-Chien; Wan-Ru Chao; Jiann-Jou Yang
Journal:  Materials (Basel)       Date:  2016-06-14       Impact factor: 3.623

4.  Identification of a Novel Mutation of LAMB3 Gene in a Lybian Patient with Hereditary Epidermolysis Bullosa by Whole Exome Sequencing.

Authors:  Nadia Laroussi; Olfa Messaoud; Mariem Chargui; Chaima Ben Fayala; Abdelaziz Elahlafi; Mourad Mokni; Anu Bashamboo; Kenneth McElreavey; Mohamed Samir Boubaker; Houda Yacoub Youssef; Sonia Abdelhak
Journal:  Ann Dermatol       Date:  2017-03-24       Impact factor: 1.444

5.  Screening of an Epigenetic Drug Library Identifies 4-((hydroxyamino)carbonyl)-N-(2-hydroxyethyl)-N-Phenyl-Benzeneacetamide that Reduces Melanin Synthesis by Inhibiting Tyrosinase Activity Independently of Epigenetic Mechanisms.

Authors:  Hyerim Song; Yun Jeong Hwang; Jae Won Ha; Yong Chool Boo
Journal:  Int J Mol Sci       Date:  2020-06-28       Impact factor: 5.923

6.  Concern-driven integrated approaches to nanomaterial testing and assessment--report of the NanoSafety Cluster Working Group 10.

Authors:  Agnes G Oomen; Peter M J Bos; Teresa F Fernandes; Kerstin Hund-Rinke; Diana Boraschi; Hugh J Byrne; Karin Aschberger; Stefania Gottardo; Frank von der Kammer; Dana Kühnel; Danail Hristozov; Antonio Marcomini; Lucia Migliore; Janeck Scott-Fordsmand; Peter Wick; Robert Landsiedel
Journal:  Nanotoxicology       Date:  2013-05-28       Impact factor: 5.913

  6 in total

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