Literature DB >> 22237525

DNA extraction from formalin-fixed material.

Paula F Campos1, Thomas M P Gilbert.   

Abstract

The principal challenges facing PCR-based analyses of DNA extracted from formalin-fixed materials are fragmentation of the DNA and cross-linked protein-DNA complexes. Here, we present an efficient protocol to extract DNA from formalin-fixed or paraffin-embedded tissues (FFPE). In this protocol, protein-DNA cross-links are reversed using heat and alkali treatment, yielding significantly longer fragments and larger amounts of PCR-amplifiable DNA than standard DNA extraction protocols.

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Year:  2012        PMID: 22237525     DOI: 10.1007/978-1-61779-516-9_11

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  22 in total

1.  Long-term stability of human genomic and human papillomavirus DNA stored in BD SurePath and Hologic PreservCyt liquid-based cytology media.

Authors:  Patricia M Agreda; Gerard H Beitman; Erin C Gutierrez; James M Harris; Kristopher R Koch; William D LaViers; Sharon V Leitch; Courtney E Maus; Ray A McMillian; William A Nussbaumer; Marcus L R Palmer; Michael J Porter; Gregory A Richart; Ryan J Schwab; Laurence M Vaughan
Journal:  J Clin Microbiol       Date:  2013-05-15       Impact factor: 5.948

2.  Microbial Lineages in Sarcoidosis. A Metagenomic Analysis Tailored for Low-Microbial Content Samples.

Authors:  Erik L Clarke; Abigail P Lauder; Casey E Hofstaedter; Young Hwang; Ayannah S Fitzgerald; Ize Imai; Wojciech Biernat; Bartłomiej Rękawiecki; Hanna Majewska; Anna Dubaniewicz; Leslie A Litzky; Michael D Feldman; Kyle Bittinger; Milton D Rossman; Karen C Patterson; Frederic D Bushman; Ronald G Collman
Journal:  Am J Respir Crit Care Med       Date:  2018-01-15       Impact factor: 21.405

3.  Turning "Sarkoid" into "Dropsy". A Valiant, Next-Generation Attempt.

Authors:  Robert P Dickson
Journal:  Am J Respir Crit Care Med       Date:  2018-01-15       Impact factor: 21.405

4.  Guidelines for Sanger sequencing and molecular assay monitoring.

Authors:  Beate M Crossley; Jianfa Bai; Amy Glaser; Roger Maes; Elizabeth Porter; Mary Lea Killian; Travis Clement; Kathy Toohey-Kurth
Journal:  J Vet Diagn Invest       Date:  2020-02-18       Impact factor: 1.279

5.  Trypanosoma cruzi diversity in naturally infected nonhuman primates in Louisiana assessed by deep sequencing of the mini-exon gene.

Authors:  Claudia Herrera; Alicia Majeau; Peter Didier; Kathrine P Falkenstein; Eric Dumonteil
Journal:  Trans R Soc Trop Med Hyg       Date:  2019-05-01       Impact factor: 2.184

6.  Comparison of different methods for repairing damaged DNA from buffered and unbuffered formalin-fixed tissues.

Authors:  Yuxuan Liu; Huayu He; Shaohua Yi; Qingqing Hu; Wenqiong Zhang; Daixin Huang
Journal:  Int J Legal Med       Date:  2017-08-30       Impact factor: 2.686

7.  Development of a loop-mediated isothermal amplification method for detection of Histoplasma capsulatum DNA in clinical samples.

Authors:  Christina M Scheel; Yitian Zhou; Raquel C Theodoro; Bethany Abrams; S Arunmozhi Balajee; Anastasia P Litvintseva
Journal:  J Clin Microbiol       Date:  2013-11-27       Impact factor: 5.948

8.  SIV/SHIV Infection Triggers Vascular Inflammation, Diminished Expression of Krüppel-like Factor 2 and Endothelial Dysfunction.

Authors:  Soumya Panigrahi; Michael L Freeman; Nicholas T Funderburg; Joseph C Mudd; Souheil A Younes; Scott F Sieg; David A Zidar; Mirko Paiardini; Francois Villinger; Leonard H Calabrese; Richard M Ransohoff; Mukesh K Jain; Michael M Lederman
Journal:  J Infect Dis       Date:  2015-12-15       Impact factor: 5.226

9.  Three Huntington's Disease Specific Mutation-Carrying Human Embryonic Stem Cell Lines Have Stable Number of CAG Repeats upon In Vitro Differentiation into Cardiomyocytes.

Authors:  Laureen Jacquet; Andreas Neueder; Gabor Földes; Panagiotis Karagiannis; Carl Hobbs; Nelly Jolinon; Maxime Mioulane; Takao Sakai; Sian E Harding; Dusko Ilic
Journal:  PLoS One       Date:  2015-05-20       Impact factor: 3.240

10.  The PAXgene(®) tissue system preserves phosphoproteins in human tissue specimens and enables comprehensive protein biomarker research.

Authors:  Sibylle Gündisch; Christina Schott; Claudia Wolff; Kai Tran; Christian Beese; Christian Viertler; Kurt Zatloukal; Karl-Friedrich Becker
Journal:  PLoS One       Date:  2013-03-29       Impact factor: 3.240

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