Literature DB >> 22227115

Structure and mechanism of the CMR complex for CRISPR-mediated antiviral immunity.

Jing Zhang1, Christophe Rouillon, Melina Kerou, Judith Reeks, Kim Brugger, Shirley Graham, Julia Reimann, Giuseppe Cannone, Huanting Liu, Sonja-Verena Albers, James H Naismith, Laura Spagnolo, Malcolm F White.   

Abstract

The prokaryotic clusters of regularly interspaced palindromic repeats (CRISPR) system utilizes genomically encoded CRISPR RNA (crRNA), derived from invading viruses and incorporated into ribonucleoprotein complexes with CRISPR-associated (CAS) proteins, to target and degrade viral DNA or RNA on subsequent infection. RNA is targeted by the CMR complex. In Sulfolobus solfataricus, this complex is composed of seven CAS protein subunits (Cmr1-7) and carries a diverse "payload" of targeting crRNA. The crystal structure of Cmr7 and low-resolution structure of the complex are presented. S. solfataricus CMR cleaves RNA targets in an endonucleolytic reaction at UA dinucleotides. This activity is dependent on the 8 nt repeat-derived 5' sequence in the crRNA, but not on the presence of a protospacer-associated motif (PAM) in the target. Both target and guide RNAs can be cleaved, although a single molecule of guide RNA can support the degradation of multiple targets.
Copyright © 2012 Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 22227115      PMCID: PMC3381847          DOI: 10.1016/j.molcel.2011.12.013

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  44 in total

1.  Structure and activity of the Cas3 HD nuclease MJ0384, an effector enzyme of the CRISPR interference.

Authors:  Natalia Beloglazova; Pierre Petit; Robert Flick; Greg Brown; Alexei Savchenko; Alexander F Yakunin
Journal:  EMBO J       Date:  2011-10-18       Impact factor: 11.598

Review 2.  Argonaute proteins: key players in RNA silencing.

Authors:  Gyorgy Hutvagner; Martin J Simard
Journal:  Nat Rev Mol Cell Biol       Date:  2008-01       Impact factor: 94.444

Review 3.  Evolution and classification of the CRISPR-Cas systems.

Authors:  Kira S Makarova; Daniel H Haft; Rodolphe Barrangou; Stan J J Brouns; Emmanuelle Charpentier; Philippe Horvath; Sylvain Moineau; Francisco J M Mojica; Yuri I Wolf; Alexander F Yakunin; John van der Oost; Eugene V Koonin
Journal:  Nat Rev Microbiol       Date:  2011-05-09       Impact factor: 60.633

Review 4.  The CRISPR system: small RNA-guided defense in bacteria and archaea.

Authors:  Fedor V Karginov; Gregory J Hannon
Journal:  Mol Cell       Date:  2010-01-15       Impact factor: 17.970

Review 5.  CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea.

Authors:  Luciano A Marraffini; Erik J Sontheimer
Journal:  Nat Rev Genet       Date:  2010-03       Impact factor: 53.242

6.  CRISPR families of the crenarchaeal genus Sulfolobus: bidirectional transcription and dynamic properties.

Authors:  Reidun K Lillestøl; Shiraz A Shah; Kim Brügger; Peter Redder; Hien Phan; Jan Christiansen; Roger A Garrett
Journal:  Mol Microbiol       Date:  2009-02-23       Impact factor: 3.501

7.  RNA-guided RNA cleavage by a CRISPR RNA-Cas protein complex.

Authors:  Caryn R Hale; Peng Zhao; Sara Olson; Michael O Duff; Brenton R Graveley; Lance Wells; Rebecca M Terns; Michael P Terns
Journal:  Cell       Date:  2009-11-25       Impact factor: 41.582

8.  Diversity, activity, and evolution of CRISPR loci in Streptococcus thermophilus.

Authors:  Philippe Horvath; Dennis A Romero; Anne-Claire Coûté-Monvoisin; Melissa Richards; Hélène Deveau; Sylvain Moineau; Patrick Boyaval; Christophe Fremaux; Rodolphe Barrangou
Journal:  J Bacteriol       Date:  2007-12-07       Impact factor: 3.490

9.  Fast and accurate short read alignment with Burrows-Wheeler transform.

Authors:  Heng Li; Richard Durbin
Journal:  Bioinformatics       Date:  2009-05-18       Impact factor: 6.937

10.  Structural and functional characterization of an archaeal clustered regularly interspaced short palindromic repeat (CRISPR)-associated complex for antiviral defense (CASCADE).

Authors:  Nathanael G Lintner; Melina Kerou; Susan K Brumfield; Shirley Graham; Huanting Liu; James H Naismith; Matthew Sdano; Nan Peng; Qunxin She; Valérie Copié; Mark J Young; Malcolm F White; C Martin Lawrence
Journal:  J Biol Chem       Date:  2011-04-20       Impact factor: 5.157

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  152 in total

Review 1.  CRISPR-Cas immunity in prokaryotes.

Authors:  Luciano A Marraffini
Journal:  Nature       Date:  2015-10-01       Impact factor: 49.962

2.  CRISPRcasIdentifier: Machine learning for accurate identification and classification of CRISPR-Cas systems.

Authors:  Victor A Padilha; Omer S Alkhnbashi; Shiraz A Shah; André C P L F de Carvalho; Rolf Backofen
Journal:  Gigascience       Date:  2020-06-01       Impact factor: 6.524

3.  Dynamics of Cas10 Govern Discrimination between Self and Non-self in Type III CRISPR-Cas Immunity.

Authors:  Ling Wang; Charlie Y Mo; Michael R Wasserman; Jakob T Rostøl; Luciano A Marraffini; Shixin Liu
Journal:  Mol Cell       Date:  2018-11-29       Impact factor: 17.970

Review 4.  Cas9-based tools for targeted genome editing and transcriptional control.

Authors:  Tao Xu; Yongchao Li; Joy D Van Nostrand; Zhili He; Jizhong Zhou
Journal:  Appl Environ Microbiol       Date:  2014-01-03       Impact factor: 4.792

5.  The three major types of CRISPR-Cas systems function independently in CRISPR RNA biogenesis in Streptococcus thermophilus.

Authors:  Jason Carte; Ross T Christopher; Justin T Smith; Sara Olson; Rodolphe Barrangou; Sylvain Moineau; Claiborne V C Glover; Brenton R Graveley; Rebecca M Terns; Michael P Terns
Journal:  Mol Microbiol       Date:  2014-06-04       Impact factor: 3.501

6.  Essential structural and functional roles of the Cmr4 subunit in RNA cleavage by the Cmr CRISPR-Cas complex.

Authors:  Nancy F Ramia; Michael Spilman; Li Tang; Yaming Shao; Joshua Elmore; Caryn Hale; Alexis Cocozaki; Nilakshee Bhattacharya; Rebecca M Terns; Michael P Terns; Hong Li; Scott M Stagg
Journal:  Cell Rep       Date:  2014-12-04       Impact factor: 9.423

Review 7.  CRISPR-based technologies: prokaryotic defense weapons repurposed.

Authors:  Rebecca M Terns; Michael P Terns
Journal:  Trends Genet       Date:  2014-02-18       Impact factor: 11.639

8.  Recognition and cleavage of a nonstructured CRISPR RNA by its processing endoribonuclease Cas6.

Authors:  Yaming Shao; Hong Li
Journal:  Structure       Date:  2013-03-05       Impact factor: 5.006

Review 9.  CRISPR-mediated defense mechanisms in the hyperthermophilic archaeal genus Sulfolobus.

Authors:  Andrea Manica; Christa Schleper
Journal:  RNA Biol       Date:  2013-03-27       Impact factor: 4.652

Review 10.  Resistance and tolerance to foreign elements by prokaryotic immune systems - curating the genome.

Authors:  Gregory W Goldberg; Luciano A Marraffini
Journal:  Nat Rev Immunol       Date:  2015-11       Impact factor: 53.106

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