Literature DB >> 22226607

You've come a long way: c-di-GMP signaling.

Holger Sondermann1, Nicholas J Shikuma, Fitnat H Yildiz.   

Abstract

Cyclic dimeric guanosine monophosphate (c-di-GMP) is a common, bacterial second messenger that regulates diverse cellular processes in bacteria. Opposing activities of diguanylate cyclases (DGCs) and phosphodiesterases (PDEs) control c-di-GMP homeostasis in the cell. Many microbes have a large number of genes encoding DGCs and PDEs that are predicted to be part of c-di-GMP signaling networks. Other building blocks of these networks are c-di-GMP receptors which sense the cellular levels of the dinucleotide. C-di-GMP receptors form a more diverse family, including various transcription factors, PilZ domains, degenerate DGCs or PDEs, and riboswitches. Recent studies revealing the molecular basis of c-di-GMP signaling mechanisms enhanced our understanding of how this molecule controls downstream biological processes and how c-di-GMP signaling specificity is achieved.
Copyright © 2012 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 22226607      PMCID: PMC3320698          DOI: 10.1016/j.mib.2011.12.008

Source DB:  PubMed          Journal:  Curr Opin Microbiol        ISSN: 1369-5274            Impact factor:   7.934


  62 in total

1.  Phosphodiesterase A1, a regulator of cellulose synthesis in Acetobacter xylinum, is a heme-based sensor.

Authors:  A L Chang; J R Tuckerman; G Gonzalez; R Mayer; H Weinhouse; G Volman; D Amikam; M Benziman; M A Gilles-Gonzalez
Journal:  Biochemistry       Date:  2001-03-27       Impact factor: 3.162

2.  Cyclic di-GMP activation of polynucleotide phosphorylase signal-dependent RNA processing.

Authors:  Jason R Tuckerman; Gonzalo Gonzalez; Marie-Alda Gilles-Gonzalez
Journal:  J Mol Biol       Date:  2011-02-12       Impact factor: 5.469

3.  Structure and mechanism of a bacterial light-regulated cyclic nucleotide phosphodiesterase.

Authors:  Thomas R M Barends; Elisabeth Hartmann; Julia J Griese; Thorsten Beitlich; Natalia V Kirienko; Dmitri A Ryjenkov; Jochen Reinstein; Robert L Shoeman; Mark Gomelsky; Ilme Schlichting
Journal:  Nature       Date:  2009-06-18       Impact factor: 49.962

4.  Cyclic di-GMP allosterically inhibits the CRP-like protein (Clp) of Xanthomonas axonopodis pv. citri.

Authors:  Jason L Leduc; Gary P Roberts
Journal:  J Bacteriol       Date:  2009-07-24       Impact factor: 3.490

5.  Identification and characterization of cyclic diguanylate signaling systems controlling rugosity in Vibrio cholerae.

Authors:  Sinem Beyhan; Lindsay S Odell; Fitnat H Yildiz
Journal:  J Bacteriol       Date:  2008-09-12       Impact factor: 3.490

6.  Structural basis of ligand binding by a c-di-GMP riboswitch.

Authors:  Kathryn D Smith; Sarah V Lipchock; Tyler D Ames; Jimin Wang; Ronald R Breaker; Scott A Strobel
Journal:  Nat Struct Mol Biol       Date:  2009-11-08       Impact factor: 15.369

7.  Structural biochemistry of a bacterial checkpoint protein reveals diadenylate cyclase activity regulated by DNA recombination intermediates.

Authors:  Gregor Witte; Sophia Hartung; Katharina Büttner; Karl-Peter Hopfner
Journal:  Mol Cell       Date:  2008-04-25       Impact factor: 17.970

8.  Riboswitches in eubacteria sense the second messenger cyclic di-GMP.

Authors:  N Sudarsan; E R Lee; Z Weinberg; R H Moy; J N Kim; K H Link; R R Breaker
Journal:  Science       Date:  2008-07-18       Impact factor: 47.728

9.  Structure of BeF3- -modified response regulator PleD: implications for diguanylate cyclase activation, catalysis, and feedback inhibition.

Authors:  Paul Wassmann; Carmen Chan; Ralf Paul; Andreas Beck; Heiko Heerklotz; Urs Jenal; Tilman Schirmer
Journal:  Structure       Date:  2007-08       Impact factor: 5.006

10.  MrkH, a novel c-di-GMP-dependent transcriptional activator, controls Klebsiella pneumoniae biofilm formation by regulating type 3 fimbriae expression.

Authors:  Jonathan J Wilksch; Ji Yang; Abigail Clements; Jacinta L Gabbe; Kirsty R Short; Hanwei Cao; Rosalia Cavaliere; Catherine E James; Cynthia B Whitchurch; Mark A Schembri; Mary L C Chuah; Zhao-Xun Liang; Odilia L Wijburg; Adam W Jenney; Trevor Lithgow; Richard A Strugnell
Journal:  PLoS Pathog       Date:  2011-08-25       Impact factor: 6.823

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  95 in total

1.  Mechanistic insights into c-di-GMP-dependent control of the biofilm regulator FleQ from Pseudomonas aeruginosa.

Authors:  Bruno Y Matsuyama; Petya V Krasteva; Claudine Baraquet; Caroline S Harwood; Holger Sondermann; Marcos V A S Navarro
Journal:  Proc Natl Acad Sci U S A       Date:  2015-12-28       Impact factor: 11.205

Review 2.  Sensing the messenger: the diverse ways that bacteria signal through c-di-GMP.

Authors:  Petya Violinova Krasteva; Krista Michelle Giglio; Holger Sondermann
Journal:  Protein Sci       Date:  2012-06-05       Impact factor: 6.725

3.  Capture compound mass spectrometry--a powerful tool to identify novel c-di-GMP effector proteins.

Authors:  Benoît-Joseph Laventie; Jutta Nesper; Erik Ahrné; Timo Glatter; Alexander Schmidt; Urs Jenal
Journal:  J Vis Exp       Date:  2015-03-29       Impact factor: 1.355

4.  Sodium Lactate Negatively Regulates Shewanella putrefaciens CN32 Biofilm Formation via a Three-Component Regulatory System (LrbS-LrbA-LrbR).

Authors:  Cong Liu; Jinshui Yang; Liang Liu; Baozhen Li; Hongli Yuan; Weijie Liu
Journal:  Appl Environ Microbiol       Date:  2017-06-30       Impact factor: 4.792

5.  Multiplex PCR assay targeting a diguanylate cyclase-encoding gene, cgcA, to differentiate species within the genus Cronobacter.

Authors:  L Carter; L A Lindsey; C J Grim; V Sathyamoorthy; K G Jarvis; G Gopinath; C Lee; J A Sadowski; L Trach; M Pava-Ripoll; B A McCardell; B D Tall; L Hu
Journal:  Appl Environ Microbiol       Date:  2012-11-09       Impact factor: 4.792

6.  Crystallization and preliminary X-ray diffraction studies of Xanthomonas campestris PNPase in the presence of c-di-GMP.

Authors:  Yu-Chuan Wang; Ko-Hsin Chin; Mary Lay-Cheng Chuah; Zhao-Xun Liang; Shan-Ho Chou
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-09-29

7.  Purine biosynthesis, biofilm formation, and persistence of an insect-microbe gut symbiosis.

Authors:  Jiyeun Kate Kim; Jeong Yun Kwon; Soo Kyoung Kim; Sang Heum Han; Yeo Jin Won; Joon Hee Lee; Chan-Hee Kim; Takema Fukatsu; Bok Luel Lee
Journal:  Appl Environ Microbiol       Date:  2014-05-09       Impact factor: 4.792

8.  The Xanthomonas oryzae pv. oryzae PilZ Domain Proteins Function Differentially in Cyclic di-GMP Binding and Regulation of Virulence and Motility.

Authors:  Fenghuan Yang; Fang Tian; Huamin Chen; William Hutchins; Ching-Hong Yang; Chenyang He
Journal:  Appl Environ Microbiol       Date:  2015-04-24       Impact factor: 4.792

9.  Identification of c-di-GMP derivatives resistant to an EAL domain phosphodiesterase.

Authors:  Carly A Shanahan; Barbara L Gaffney; Roger A Jones; Scott A Strobel
Journal:  Biochemistry       Date:  2013-01-03       Impact factor: 3.162

10.  Diguanylate cyclase activity of the Mycobacterium leprae T cell antigen ML1419c.

Authors:  Suwatchareeporn Rotcheewaphan; John T Belisle; Kristofor J Webb; Hee-Jin Kim; John S Spencer; Bradley R Borlee
Journal:  Microbiology (Reading)       Date:  2016-07-22       Impact factor: 2.777

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