| Literature DB >> 22225527 |
Giovanni Corso1, Daniele Marrelli, Valeria Pascale, Carla Vindigni, Franco Roviello.
Abstract
BACKGROUND: The frequency of E-cadherin germline mutations in countries with different incidence rates for gastric carcinoma has not been well established. The goal of this study was to assess the worldwide frequency of CDH1 germline mutations in gastric cancers coming from low- and high-risk areas.Entities:
Mesh:
Substances:
Year: 2012 PMID: 22225527 PMCID: PMC3305498 DOI: 10.1186/1471-2407-12-8
Source DB: PubMed Journal: BMC Cancer ISSN: 1471-2407 Impact factor: 4.430
Figure 1Flow diagram of study selection and information through different phases of the systematic review and meta-analysis. (The diagram was structured in accord with the Digestive Disease Week; United European Gastroenterology Week and with the PRISMA statement)
CDH1 germline mutations detected to date
| Reference | Exon/Intron | Mutation Type | Ancestry | |
|---|---|---|---|---|
| [ | 5'UTR(-117)G > A | Promotor | 5'UTR substitution | USA (1) |
| [ | 5'UTR(-71)C > G | Promotor | 5'UTR substitution | USA (1) |
| [ | -63 C > A | Promotor | 5'UTR substitution | Italy (1) |
| [ | Del 5'UTR-ex 1 | Promotor | Deletion | Spain (1) |
| [ | del ex 1-2 | Exon 1-2 | Deletion | Ireland (1), Canada (1) Lithuania (1) |
| [ | 2 T > C | Exon 1 | Missense | Unknow (1) |
| [ | 3 G > C | Exon 1 | Nonsense | Canada (1) |
| [ | 41delT | Exon 1 | Deletion | USA (1) |
| [ | 45insT | Exon 1 | Insertion | UK (1) |
| [ | 46insTGC | Exon 1 | Insertion | Unknow (1) |
| [ | 48 + 5 G > C | Intron 1 | Splice Site | USA (1) |
| [ | 48 + 15 C > G | Intron 1 | Splice Site | USA (1) |
| [ | 49-2A > G | Intron 1 | Splice Site | Europe (1), UK (1), Ireland (1) |
| [ | 53delC | Exon 2 | Deletion | Europe (1) |
| [ | 59 G > A | Exon 2 | Non sense | UK (1) |
| [ | 70 G > T | Exon 2 | Non sense | USA (1) |
| [ | 185 G > T | Exon 3 | Missense | Japan (1) |
| [ | 187 C > T | Exon 3 | Non sense | USA (1) |
| [ | 190 C > T | Exon 3 | Non sense | New Zealand (1) |
| [ | 283 C > T | Exon 3 | Non sense | France (1) |
| [ | 353 C > G | Exon 3 | Missense | Europe (1) |
| [ | 372delC | Exon 3 | Deletion | Germany (1) |
| [ | 377delC | Exon 3 | Deletion | Unknow (1) |
| [ | 382delC | Exon 3 | Deletion | Europe (1) |
| [ | 388 + 26 C > T | Intron 3 | Splice Site | USA (1) |
| [ | 515 C > G | Exon 4 | Missense | Unknown (1) |
| [ | 525 C > G | Exon 4 | Missense | Finland (1) |
| [ | 532-18 C > T | Intron 4 | Splice site | UK (1), Portugal (1) |
| [ | 586 G > T | Exon 5 | Non sense | Europe (1) |
| [ | 531 + 1 G > A | Intron 5 | Splice site | Europe (1) |
| [ | 531 + 2 T > A | Intron 5 | Splice site | France (1) |
| [ | 641 T > C | Exon 5 | Missense | Europe (1) |
| [ | 670 C > T | Exon 5 | Missense | Italy (1) |
| [ | 715 G > A | Exon 6 | Missense | Europe (1) |
| [ | 731A > G | Exon 6 | Missense | Korea (1) |
| [ | 753insG | Exon 6 | Insertion | Unknown (1) |
| [ | 808 T > G | Exon 6 | Missense | Unknown (1) |
| [ | 832 G > A | Exon 6 | Splice site | Pakistan (1) |
| [ | 833-2A > G | Inton 6 | Splice site | USA (1) |
| [ | 892 G > A | Exon 7 | Missense | Europe (1) |
| [ | 1003 C > T | Exon 7 | Non sense | Sweden (1), Canada (2) |
| [ | 1008 G > T | Exon 7 | Splice site | New Zealand (1) |
| [ | 1018A > G | Exon 8 | Missense | Europe (1), China (1) |
| [ | 1023 T > G | Exon 8 | Nonsense | Unknown (1) |
| [ | 1063delT | Exon 8 | Deletion | Canada (1) |
| [ | 1064insT | Exon 8 | Insertion | UK (1) |
| [ | 1107delC | Exon 8 | Deletion | Spain (1) |
| [ | 1118 C > T | Exon 8 | Missense | Italy (1) |
| [ | 1134del8ins5 | Exon 8 | Deletion/Insertion | Netherlands (1) |
| [ | 1137 G > A | Exon 8 | Splice site | Europe (2) |
| [ | 1137 + 1 G > A | Intron 8 | Splice site | USA (1) |
| [ | 1212delC | Exon 9 | Deletion | Europe (1), USA (1) |
| [ | 1226 T > C | Exon 9 | Missense | Europe (1) |
| [ | 1243A > C | Exon 9 | Missense | Japan (1) |
| [ | 1285 C > T | Exon 9 | Missense | Canada (1) |
| [ | 1226 T > C | Exon 9 | Missense | Europe (1) |
| [ | 1306_1303insA, 1306_1307delTT | Exon 9 | Del/Ins | Austria (1) |
| [ | 1391-1392delTC | Exon 10 | Deletion | Europe (1) |
| [ | 1460 T > C | Exon 10 | Missense | Korea (1) |
| [ | 1466insC | Exon 10 | Insertion | UK (1) |
| [ | 1472insA | Exon 10 | Insertion | UK (1) |
| [ | 1476delAG | Exon 10 | Deletion | Europe (1) |
| [ | 1487del7 | Exon 10 | Deletion | New Zealand (1) |
| [ | 1507 C > T | Exon 10 | Non sense | China (1) |
| [ | 1565 + 1 G > T | Intron 10 | Splice site | New Zealand (1) |
| [ | 1565 + 2insT | Intron 10 | Insertion | USA (1) |
| [ | 1588insC | Exon 11 | Insertion | USA (1) |
| [ | 1610delC | Exon 11 | Deletion | Spain (1) |
| [ | 1619insG | Exon 11 | Insertion | Germany (1) |
| [ | 1682insA | Exon 11 | Insertion | Ireland (1) |
| [ | 1710delT | Exon 11 | Deletion | USA (1) |
| [ | 1711insG | Exon 11 | Insertion | USA (1) |
| [ | 1711 + 5 G > A | Intron 11 | Splice site | Europe (1) |
| [ | 1774 G > A | Exon 12 | Missense | Sweden (1) |
| [ | 1779insC | Exon 12 | Insertion | Europe (1) |
| [ | 1792 C > T | Exon 12 | Non sense | UK (1) |
| [ | 1795A > T | Exon 12 | Missense | Unknown (1) |
| [ | 1779insC | Exon 12 | Insertion | Europe (1) |
| [ | 1849 G > A | Exon 12 | Missense | USA (2) |
| [ | 1876 T > A | Exon 12 | Missense | Unknown (1) |
| [ | 1901 C > T | Exon 12 | Missense/splice site | UK (1), New Zealand (1), Portugal (1) |
| [ | 1913 G > A | Exon 12 | Nonsense | Spain (1) |
| [ | 1937-13 T > C | Intron 12 | Splice Site | USA (1) |
| [ | 2061delTG | Exon 13 | Deletion | Europe (1) |
| [ | 2064delTG | Exon 13 | Deletion | USA (1) |
| [ | 2095 C > T | Exon 13 | Non sense | New Zealand (1), China (1) |
| [ | 2161 C > G | Exon 13 | Splice site | Canada (1) |
| [ | 2164 + 5 G > A | Exon 14 | Splice site | Unknwon (1) |
| [ | del 14-16 | Ex 14-16 | Deletion | Europe (1) |
| [ | 2195 G > A | Exon 14 | Missense | Europe (1) |
| [ | 2245 C > T | Exon 14 | Missense | Colombia (1) |
| [ | 2269 G > A | Exon 14 | Missense | Portugal (1) |
| [ | 2275 G > T | Exon 14 | Nonsense | Iran (1) |
| [ | 2276delG | Exon 14 | Deletion | Canada (1) |
| [ | 2287 G > T | Exon 14 | Nonsense | Unknown (1) |
| [ | 2295 + 5 G > A | Intron 14 | Splice site | Europe (1) |
| [ | 2310delC | Exon 15 | Deletion | Europe (1) |
| [ | 2343A > T | Exon 15 | Missense | UK (1) |
| [ | 2381insC | Exon 15 | Insertion | New Zealand (1) |
| [ | 2392 G > A | Exon 15 | Missense | Unknown (1) |
| [ | 2395delC | Exon 15 | Deletion | USA (1) |
| [ | 2396 C > G | Exon 15 | Missense | Germany (1) |
| [ | 2398delC | Exon 15 | Deletion | Ireland (2) |
| [ | 2439 + 31 G > A | Intron 15 | Splice site | USA (1) |
| [ | 2399delG | Exon15 | Deletion | USA (1) |
| [ | 2440-6 C > G | Intron 15 | Splice site | Europe (1) |
| [ | 2494 G > A | Exon 16 | Missense | Japan (1) |
| [ | Del ex 16 | Exon 16 | Deletion | Europe (1) |
Figure 2Worldwide map with the overall . Red and yellow indicate respectively middle/high- and low- risk area for gastric cancer development.
Frequencies of missense and non-missense CDH1 germline mutations in group A and B; statistical analysis reveals a strong association between high CDH1 mutation frequency with low-risk area for gastric cancer
| Missense mutations (%) | Non-missense mutations (%) | |
|---|---|---|
| 17 (50) | 77 (87.5) | |
| 11 (32.4) | 5 (5.7) | |
| 6 (17.6) | 6 (6.8) | |
| 34 (27.9) | 88 (72.1) |
Figure 3The figure shows the distribution of missense and non-missense . Ancestry information of group C is unknown.